Personal tools

MCL coexpression mm9:574: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.0391713512091058,0.284653994034632,0.427287045434261,0.478344564964051,0.536079693557374,0.21663623580859,0.330961344851488,-0.00635742338754474,0.0171827940388165,0.018438485570651,-0.00635742338754474,-0.00379341374396122,-0.00635742338754474,-0.00355761745908177,0.00324764650437465,-0.00635742338754474,-0.00635742338754474,0.00342837558998645,0.00603116213523845,0.00546017737098349,0.0249797759769823,-0.00635742338754474,-0.00635742338754474,0.411702994046917,0.507276140715566,0.405213249937191,0.277637462686624,0.359426363124588,0.472452088945111,0.431189813466574,0.377442218022681,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,0.213263536309152,0.274548826370538,0.305019178925044,0.00532250155366618,-0.00635742338754474,-0.00635742338754474,0.0196234445930416,0.0110345653133486,-0.00635742338754474,-0.00239599325479922,-0.00635742338754474,-0.000727775849567282,0.0129505046491578,0.000231519539697977,-0.00635742338754474,-0.000421987529798292,0.00239637330277661,-0.00635742338754474,-0.00117573090954873,-0.00635742338754474,0.0033223418758375,-0.00635742338754474,0.0188935948426028,-0.00635742338754474,-0.00635742338754474,0.00782757070268526,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,0.00605434460972495,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,-0.00306150376578514,-0.00635742338754474,1.96527762838421e-05,-0.00635742338754474,0.012531420602026,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,0.0423979172808887,0.00447654996672157,0.00318991614106255,-0.00635742338754474,-0.00343289849846302,-0.00635742338754474,0.00186816728783688,0.00855742368468554,0.0151567355324015,0.0108956830793677,0.0192770090428011,-0.000647351452262546,0.00292023121133803,0.00760505315955513,0.0949577580190561,0.0270813644087694,0.0109734897800694,-0.00635742338754474,0.0270925906641878,0.00601000937831327,0.0673719046233431,-0.00110007226299982,-0.00635742338754474,-0.00635742338754474,0.0481575243292056,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,0.0903928980999433,0.10077152664873,0.0614825789851993,0.304859376005739,-0.00635742338754474,0.00921375002025446,0.00359320229294336,0.00252200663667023,0.000575067373799707,-0.00166737277571551,0.0165194277750091,0.00155177305090369,0.134667087676684,0.0263997476263809,-0.00635742338754474,0.0180342646173738,0.0258616273539581,0.0068494973337378,0.383462137450191,0.0108002523756293,0.0180366724125017,0.676262038057188,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,0.0147951373056539,0.0350899070122729,0.00508638587179642,0.022984424254013,0.00124959509461295,0.00982841865178388,0.00303074838437249,0.0187016784385952,0.0319915498801452,0.0412145317517472,0.0245187561526553,0.00181561215539545,0.000555695428848132,0.00470486481878223,0.0283958701094847,0.00864337354631283,0.0129109945117599,0.00765666054965365,0.0306327454467579,0.000164057856272561,-0.00635742338754474,0.00912985060698508,0.000263609983956461,0.00183849276050134,0.0504326051837835,0.0262083444697147,0.0489310265722229,-0.00635742338754474,-0.00635742338754474,0.00199798596051288,-6.8767821937193e-05,0.000681058306091349,0.017296112908794,0.00659234868497042,-0.000356761791240786,0.0299107033165363,0.0203699248857555,0.0238711583110248,0.0175144277119093,0.00823687723270226,0.0486044974698596,0.0120922787832789,0.0143608062640613,0.0171775377820433,0.035505041445244,0.0227347424442578,0.00316692699457102,0.701614666819207,0.504963008830699,0.0400862108577222,0.13686228886559,0.191828360728599,0.243595098512477,0.359159247557547,0.247987178827408,0.723787991798746,0.421212374558837,0.641766843971185,0.492645608737098,0.500633651602171,0.807897935023216,0.83057605794924,0.755459966922707,0.014492554485145,0.0490869729033264,0.0834890970587118,0.0594698779872362,0.088670495327174,0.0520365203514688,0.0705725809952276,0.120893523819619,0.096823666262947,0.107335823987913,0.0196633424807849,-0.00120256116307277,0.00563244060030732,0.00719445371854508,-0.000187029011389678,-0.00635742338754474,0.039138815080018,0.0105369447654965,0.0379185353815773,0.0626550163650999,0.11391966065456,0.0532552055066741,0.0793299807662429,0.028447912743128,0.0379486198078782,0.0162070065156638,0.0253662081994395,0.0101748971837179,0.00811082409691047,0.0498965448710679,0.0263984658562397,0.0452987606009272,0.0280517996614568,0.0637484512404547,0.0374187138665495,0.0571240301215247,0.0309972556857592,0.0528039725784426,0.0548544822440937,0.0577148276481182,-0.00635742338754474,0.00815186630831818,0.0372830984386356,0.0554003695943017,0.00791951177843613,0.0209280813704412,-0.00635742338754474,0.0244840061261154,-0.00635742338754474,-0.00635742338754474,0.000160083732299702,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,0.00220784657706268,-0.00635742338754474,-0.00635742338754474,0.00992781494165058,-0.000882848314491601,0.0204861272546615,0.0598523208407797,-0.00635742338754474,0.0324052464356858,0.0508818257376074,0.0857010594466218,0.0389851135484909,0.0765012452515082,0.19098588436149,0.118008621407524,0.112018739460863,0.0464819891655202,0.0176917907011525,0.0409942565954354,0.0494902097136267,0.0442750804208473,0.0412486840878629,0.0692748446889376,0.0289429976599066,0.0311150541495743,0.0481044989184816,0.0380396589699599,0.00649821594400828,0.0246991052217511,0.0473239565027139,0.0695640846697558,0.0699422901595479,0.048468566626168,0.0465704045605491,0.0601997115219606,0.703370223921602,0.0204006110871529,0.0041824235914922,0.00974180187284608,0.0155212809349689,0.0158543603575876,-0.00635742338754474,0.000525152641737618,-0.00635742338754474,-0.00198154983243789,-0.00635742338754474,0.297046422158975,-0.00145191876667624,0.035956987966521,0.1475760924695,0.155005401278377,0.20158075590238,0.145134244436389,0.148751888950694,0.17285276039556,0.730209111243766,0.0759862957600447,0.0416485683439303,0.0334111412964714,0.0178578644924516,-0.00635742338754474,0.0168690172568488,0.0125559250603519,0.0148407203374084,0.0276471529568097,0.0211686784457063,0.0153293803578745,0.048271099944962,0.00281638885800188,0.0621066665707846,0.0769963931239175,0.0350389759629004,0.0278669328522946,0.00926141333467734,0.0115128625683859,0.0247400379103772,0.0126407737089587,0.0057422368716836,0.00326998080293434,0.0231647168169806,0.0249180358749184,0.0113704473217313,0.0356872065481592,-0.00635742338754474,0.00202594596624841,-0.0011728127835454,0.0571613456377525,0.0464691693013582,0.0916186793690667,0.0573361341359971,0.0746858952795331,0.0188947609188494,0.0189425136130255,-0.00635742338754474,0.00423845411301975,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,0.0310983098932632,0.0075812837029918,0.00624473103832803,0.00485991783744303,-0.00109141685683352,0.0324475764584567,0.0127148467750895,0.0195924934264743,0.0411851595642303,0.0937113951479701,0.0388024707231176,0.0685413949192171,0.0361377285507003,0.0570645491408089,0.0538751624201124,0.0384162537244364,0.0477099446747534,0.042023807869902,0.0468204411509125,0.0601623356799843,0.039753689463363,0.0328323070274801,0.0231888219785678,0.0507643055516481,0.0554757294897482,0.0659502236098155,0.0426081829177353,0.062157699780012,0.0307059641177142,0.0516146746838393,0.0434208329543263,0.0234029586812257,0.0436909119245107,0.0441934131186119,0.0250799960121824,0.0526110985458556,0.0447797594897463,0.0123269612389777,0.0566190324183055,0.0352104103615201,0.0308743810964245,0.0258295011776791,-0.00635742338754474
|coexpression_dpi_cluster_scores_mean=0.0391713512091058,0.284653994034632,0.427287045434261,0.478344564964051,0.536079693557374,0.21663623580859,0.330961344851488,-0.00635742338754474,0.0171827940388165,0.018438485570651,-0.00635742338754474,-0.00379341374396122,-0.00635742338754474,-0.00355761745908177,0.00324764650437465,-0.00635742338754474,-0.00635742338754474,0.00342837558998645,0.00603116213523845,0.00546017737098349,0.0249797759769823,-0.00635742338754474,-0.00635742338754474,0.411702994046917,0.507276140715566,0.405213249937191,0.277637462686624,0.359426363124588,0.472452088945111,0.431189813466574,0.377442218022681,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,0.213263536309152,0.274548826370538,0.305019178925044,0.00532250155366618,-0.00635742338754474,-0.00635742338754474,0.0196234445930416,0.0110345653133486,-0.00635742338754474,-0.00239599325479922,-0.00635742338754474,-0.000727775849567282,0.0129505046491578,0.000231519539697977,-0.00635742338754474,-0.000421987529798292,0.00239637330277661,-0.00635742338754474,-0.00117573090954873,-0.00635742338754474,0.0033223418758375,-0.00635742338754474,0.0188935948426028,-0.00635742338754474,-0.00635742338754474,0.00782757070268526,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,0.00605434460972495,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,-0.00306150376578514,-0.00635742338754474,1.96527762838421e-05,-0.00635742338754474,0.012531420602026,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,0.0423979172808887,0.00447654996672157,0.00318991614106255,-0.00635742338754474,-0.00343289849846302,-0.00635742338754474,0.00186816728783688,0.00855742368468554,0.0151567355324015,0.0108956830793677,0.0192770090428011,-0.000647351452262546,0.00292023121133803,0.00760505315955513,0.0949577580190561,0.0270813644087694,0.0109734897800694,-0.00635742338754474,0.0270925906641878,0.00601000937831327,0.0673719046233431,-0.00110007226299982,-0.00635742338754474,-0.00635742338754474,0.0481575243292056,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,0.0903928980999433,0.10077152664873,0.0614825789851993,0.304859376005739,-0.00635742338754474,0.00921375002025446,0.00359320229294336,0.00252200663667023,0.000575067373799707,-0.00166737277571551,0.0165194277750091,0.00155177305090369,0.134667087676684,0.0263997476263809,-0.00635742338754474,0.0180342646173738,0.0258616273539581,0.0068494973337378,0.383462137450191,0.0108002523756293,0.0180366724125017,0.676262038057188,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,0.0147951373056539,0.0350899070122729,0.00508638587179642,0.022984424254013,0.00124959509461295,0.00982841865178388,0.00303074838437249,0.0187016784385952,0.0319915498801452,0.0412145317517472,0.0245187561526553,0.00181561215539545,0.000555695428848132,0.00470486481878223,0.0283958701094847,0.00864337354631283,0.0129109945117599,0.00765666054965365,0.0306327454467579,0.000164057856272561,-0.00635742338754474,0.00912985060698508,0.000263609983956461,0.00183849276050134,0.0504326051837835,0.0262083444697147,0.0489310265722229,-0.00635742338754474,-0.00635742338754474,0.00199798596051288,-6.8767821937193e-05,0.000681058306091349,0.017296112908794,0.00659234868497042,-0.000356761791240786,0.0299107033165363,0.0203699248857555,0.0238711583110248,0.0175144277119093,0.00823687723270226,0.0486044974698596,0.0120922787832789,0.0143608062640613,0.0171775377820433,0.035505041445244,0.0227347424442578,0.00316692699457102,0.701614666819207,0.504963008830699,0.0400862108577222,0.13686228886559,0.191828360728599,0.243595098512477,0.359159247557547,0.247987178827408,0.723787991798746,0.421212374558837,0.641766843971185,0.492645608737098,0.500633651602171,0.807897935023216,0.83057605794924,0.755459966922707,0.014492554485145,0.0490869729033264,0.0834890970587118,0.0594698779872362,0.088670495327174,0.0520365203514688,0.0705725809952276,0.120893523819619,0.096823666262947,0.107335823987913,0.0196633424807849,-0.00120256116307277,0.00563244060030732,0.00719445371854508,-0.000187029011389678,-0.00635742338754474,0.039138815080018,0.0105369447654965,0.0379185353815773,0.0626550163650999,0.11391966065456,0.0532552055066741,0.0793299807662429,0.028447912743128,0.0379486198078782,0.0162070065156638,0.0253662081994395,0.0101748971837179,0.00811082409691047,0.0498965448710679,0.0263984658562397,0.0452987606009272,0.0280517996614568,0.0637484512404547,0.0374187138665495,0.0571240301215247,0.0309972556857592,0.0528039725784426,0.0548544822440937,0.0577148276481182,-0.00635742338754474,0.00815186630831818,0.0372830984386356,0.0554003695943017,0.00791951177843613,0.0209280813704412,-0.00635742338754474,0.0244840061261154,-0.00635742338754474,-0.00635742338754474,0.000160083732299702,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,0.00220784657706268,-0.00635742338754474,-0.00635742338754474,0.00992781494165058,-0.000882848314491601,0.0204861272546615,0.0598523208407797,-0.00635742338754474,0.0324052464356858,0.0508818257376074,0.0857010594466218,0.0389851135484909,0.0765012452515082,0.19098588436149,0.118008621407524,0.112018739460863,0.0464819891655202,0.0176917907011525,0.0409942565954354,0.0494902097136267,0.0442750804208473,0.0412486840878629,0.0692748446889376,0.0289429976599066,0.0311150541495743,0.0481044989184816,0.0380396589699599,0.00649821594400828,0.0246991052217511,0.0473239565027139,0.0695640846697558,0.0699422901595479,0.048468566626168,0.0465704045605491,0.0601997115219606,0.703370223921602,0.0204006110871529,0.0041824235914922,0.00974180187284608,0.0155212809349689,0.0158543603575876,-0.00635742338754474,0.000525152641737618,-0.00635742338754474,-0.00198154983243789,-0.00635742338754474,0.297046422158975,-0.00145191876667624,0.035956987966521,0.1475760924695,0.155005401278377,0.20158075590238,0.145134244436389,0.148751888950694,0.17285276039556,0.730209111243766,0.0759862957600447,0.0416485683439303,0.0334111412964714,0.0178578644924516,-0.00635742338754474,0.0168690172568488,0.0125559250603519,0.0148407203374084,0.0276471529568097,0.0211686784457063,0.0153293803578745,0.048271099944962,0.00281638885800188,0.0621066665707846,0.0769963931239175,0.0350389759629004,0.0278669328522946,0.00926141333467734,0.0115128625683859,0.0247400379103772,0.0126407737089587,0.0057422368716836,0.00326998080293434,0.0231647168169806,0.0249180358749184,0.0113704473217313,0.0356872065481592,-0.00635742338754474,0.00202594596624841,-0.0011728127835454,0.0571613456377525,0.0464691693013582,0.0916186793690667,0.0573361341359971,0.0746858952795331,0.0188947609188494,0.0189425136130255,-0.00635742338754474,0.00423845411301975,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,-0.00635742338754474,0.0310983098932632,0.0075812837029918,0.00624473103832803,0.00485991783744303,-0.00109141685683352,0.0324475764584567,0.0127148467750895,0.0195924934264743,0.0411851595642303,0.0937113951479701,0.0388024707231176,0.0685413949192171,0.0361377285507003,0.0570645491408089,0.0538751624201124,0.0384162537244364,0.0477099446747534,0.042023807869902,0.0468204411509125,0.0601623356799843,0.039753689463363,0.0328323070274801,0.0231888219785678,0.0507643055516481,0.0554757294897482,0.0659502236098155,0.0426081829177353,0.062157699780012,0.0307059641177142,0.0516146746838393,0.0434208329543263,0.0234029586812257,0.0436909119245107,0.0441934131186119,0.0250799960121824,0.0526110985458556,0.0447797594897463,0.0123269612389777,0.0566190324183055,0.0352104103615201,0.0308743810964245,0.0258295011776791,-0.00635742338754474
|coexpression_dpi_cluster_scores_median=0,0.229925105835837,0.450248639767438,0.400075138318148,0.461976914445574,0.177143239467161,0.230662930292494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35824946256492,0.546974533653744,0.332128066466673,0.269868638010351,0.317510962857369,0.43326454883812,0.358924672444427,0.367427315394208,0,0,0,0.19802531727213,0.26272942998251,0.259277819461083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0570741246689917,0,0,0,0,0,0,0,0,0,0,0.270696956701962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.456960520238567,0,0,0.684113967421398,0,0,0,0,0,0,0,0,0,0,0,0.0509235292940968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.695921474227174,0.455020670504391,0,0.0906941294286938,0.141951942539884,0.302854023491376,0.325024146717937,0.140021075036539,0.680900226908063,0.340105722270859,0.603796137909848,0.445698873567646,0.440070648876101,0.739896326177542,0.791502100226078,0.721957271293069,0,0.046982063026719,0,0,0.0769870445726752,0.0294389011296462,0.0266298923127834,0.0597943799295356,0.0359480202541646,0.0915845023014677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0765985720783447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.180944521652268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.623899129243802,0,0,0,0,0,0,0,0,0,0,0.208427080798465,0,0,0.121893240712599,0.151730312771305,0.218821008874332,0.14119241017696,0.0962007932069227,0.100975358632432,0.65317432109614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.052900596880576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.081359932135904,0,0,0,0,0.0388749848471105,0.0269518943326477,0.0472245945615809,0,0.0476191773904887,0.0766073954291401,0,0,0,0,0,0.0589368614163519,0.0390607415003592,0.0678996586311492,0,0,0,0,0.0486884105045233,0.0408018333703219,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
}}
}}

Revision as of 12:43, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:60796214..60796222,+p@chr14:60796214..60796222
+
Mm9::chr17:88037750..88037755,+p@chr17:88037750..88037755
+
Mm9::chr17:88039220..88039230,+p@chr17:88039220..88039230
+
Mm9::chr3:107688852..107688857,+p@chr3:107688852..107688857
+
Mm9::chr3:27883557..27883561,+p@chr3:27883557..27883561
+
Mm9::chr4:11688157..11688160,+p@chr4:11688157..11688160
+
Mm9::chr7:142716982..142716988,-p@chr7:142716982..142716988
-
Mm9::chr7:29621661..29621665,+p@chr7:29621661..29621665
+
Mm9::chr7:4522289..4522293,-p@chr7:4522289..4522293
-
Mm9::chr8:77400247..77400251,+p@chr8:77400247..77400251
+
Mm9::chr9:31263011..31263015,-p@chr9:31263011..31263015
-
Mm9::chr9:31266872..31266874,-p@chr9:31266872..31266874
-
Mm9::chr9:95654534..95654548,-p@chr9:95654534..95654548
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:574&oldid=2149860"