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MCL coexpression mm9:2277: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0004129;cytochrome-c oxidase activity;1.13461125138868e-05;12861,12868!GO:0016675;oxidoreductase activity, acting on heme group of donors;1.13461125138868e-05;12861,12868!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;1.13461125138868e-05;12861,12868!GO:0015002;heme-copper terminal oxidase activity;1.13461125138868e-05;12861,12868!GO:0015078;hydrogen ion transmembrane transporter activity;0.000164248485915314;12861,12868!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000164248485915314;12861,12868!GO:0022890;inorganic cation transmembrane transporter activity;0.000262890198791146;12861,12868!GO:0006118;electron transport;0.00132752217867836;12861,12868!GO:0006091;generation of precursor metabolites and energy;0.00200354337292838;12861,12868!GO:0008324;cation transmembrane transporter activity;0.00224199183274404;12861,12868!GO:0015075;ion transmembrane transporter activity;0.00377005286630258;12861,12868!GO:0022891;substrate-specific transmembrane transporter activity;0.00458420765936074;12861,12868!GO:0016491;oxidoreductase activity;0.0047569885881299;12861,12868!GO:0022857;transmembrane transporter activity;0.00527248445609599;12861,12868!GO:0022892;substrate-specific transporter activity;0.00571006619538157;12861,12868!GO:0005739;mitochondrion;0.00571006619538157;12861,12868!
|gostat_on_MCL_coexpression=GO:0004129;cytochrome-c oxidase activity;1.13461125138868e-05;12861,12868!GO:0016675;oxidoreductase activity, acting on heme group of donors;1.13461125138868e-05;12861,12868!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;1.13461125138868e-05;12861,12868!GO:0015002;heme-copper terminal oxidase activity;1.13461125138868e-05;12861,12868!GO:0015078;hydrogen ion transmembrane transporter activity;0.000164248485915314;12861,12868!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000164248485915314;12861,12868!GO:0022890;inorganic cation transmembrane transporter activity;0.000262890198791146;12861,12868!GO:0006118;electron transport;0.00132752217867836;12861,12868!GO:0006091;generation of precursor metabolites and energy;0.00200354337292838;12861,12868!GO:0008324;cation transmembrane transporter activity;0.00224199183274404;12861,12868!GO:0015075;ion transmembrane transporter activity;0.00377005286630258;12861,12868!GO:0022891;substrate-specific transmembrane transporter activity;0.00458420765936074;12861,12868!GO:0016491;oxidoreductase activity;0.0047569885881299;12861,12868!GO:0022857;transmembrane transporter activity;0.00527248445609599;12861,12868!GO:0022892;substrate-specific transporter activity;0.00571006619538157;12861,12868!GO:0005739;mitochondrion;0.00571006619538157;12861,12868!
}}
}}

Revision as of 13:10, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr19:7292013..7292018,-p3@Cox8a
p3@LOC100048483
Mm9::chr19:7292019..7292033,-p2@Cox8a
p2@LOC100048483
Mm9::chr19:7292039..7292070,-p1@Cox8a
p1@LOC100048483
Mm9::chr5:115798962..115798968,-p1@Cox6a1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004129cytochrome-c oxidase activity1.13461125138868e-05
GO:0016675oxidoreductase activity, acting on heme group of donors1.13461125138868e-05
GO:0016676oxidoreductase activity, acting on heme group of donors, oxygen as acceptor1.13461125138868e-05
GO:0015002heme-copper terminal oxidase activity1.13461125138868e-05
GO:0015078hydrogen ion transmembrane transporter activity0.000164248485915314
GO:0015077monovalent inorganic cation transmembrane transporter activity0.000164248485915314
GO:0022890inorganic cation transmembrane transporter activity0.000262890198791146
GO:0006118electron transport0.00132752217867836
GO:0006091generation of precursor metabolites and energy0.00200354337292838
GO:0008324cation transmembrane transporter activity0.00224199183274404
GO:0015075ion transmembrane transporter activity0.00377005286630258
GO:0022891substrate-specific transmembrane transporter activity0.00458420765936074
GO:0016491oxidoreductase activity0.0047569885881299
GO:0022857transmembrane transporter activity0.00527248445609599
GO:0022892substrate-specific transporter activity0.00571006619538157
GO:0005739mitochondrion0.00571006619538157



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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