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MCL coexpression mm9:2169: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0002031!2.19e-10!25;CL:0000219!2.63e-10!54;CL:0002320!9.45e-10!46;CL:0000134!9.45e-10!46;CL:0000738!1.17e-09!17;CL:0002087!1.17e-09!17;CL:0000838!5.82e-09!12;CL:0000988!8.27e-09!32;CL:0002032!8.27e-09!32;CL:0000037!8.27e-09!32;CL:0000566!8.27e-09!32;CL:0000837!8.27e-09!32;CL:0000542!1.89e-08!13;CL:0000051!1.89e-08!13;CL:0000084!2.68e-08!11;CL:0000827!2.68e-08!11;CL:0000723!3.96e-08!91;CL:0000048!3.96e-08!91;CL:0000034!1.76e-07!97;CL:0000791!2.11e-07!9;CL:0000789!2.11e-07!9;CL:0002420!2.11e-07!9;CL:0002419!2.11e-07!9;CL:0000790!2.11e-07!9;CL:0000548!4.51e-07!115;CL:0000255!4.51e-07!115
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002384!9.45e-10!46;UBERON:0002193!9.97e-09!48;UBERON:0002405!9.97e-09!48;UBERON:0002390!6.59e-08!45;UBERON:0003061!6.59e-08!45
}}
}}

Revision as of 18:02, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr15:99537277..99537278,-p1@ENSMUST00000171685
Mm9::chr6:120767785..120767787,+p@chr6:120767785..120767787
+
Mm9::chr6:97840564..97840569,-p1@ENSMUST00000118062
Mm9::chr9:114891857..114891860,-p2@Rps27
p3@Gm9846


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
hematopoietic lineage restricted progenitor cell2.19e-1025
motile cell2.63e-1054
connective tissue cell9.45e-1046
mesenchymal cell9.45e-1046
leukocyte1.17e-0917
nongranular leukocyte1.17e-0917
lymphoid lineage restricted progenitor cell5.82e-0912
hematopoietic cell8.27e-0932
hematopoietic oligopotent progenitor cell8.27e-0932
hematopoietic stem cell8.27e-0932
angioblastic mesenchymal cell8.27e-0932
hematopoietic multipotent progenitor cell8.27e-0932
lymphocyte1.89e-0813
common lymphoid progenitor1.89e-0813
T cell2.68e-0811
pro-T cell2.68e-0811
somatic stem cell3.96e-0891
multi fate stem cell3.96e-0891
stem cell1.76e-0797
mature alpha-beta T cell2.11e-079
alpha-beta T cell2.11e-079
immature T cell2.11e-079
mature T cell2.11e-079
immature alpha-beta T cell2.11e-079
animal cell4.51e-07115
eukaryotic cell4.51e-07115

Uber Anatomy
Ontology termp-valuen
connective tissue9.45e-1046
hemolymphoid system9.97e-0948
immune system9.97e-0948
hematopoietic system6.59e-0845
blood island6.59e-0845


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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