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Coexpression cluster:C1434: Difference between revisions

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|ontology_enrichment_uberon=UBERON:0004872!3.11e-21!83;UBERON:0002049!4.88e-21!78;UBERON:0007798!4.88e-21!78;UBERON:0007503!1.05e-20!78;UBERON:0000055!6.74e-20!68;UBERON:0007500!2.20e-19!59;UBERON:0001981!2.20e-19!59;UBERON:0004537!2.20e-19!59;UBERON:0006965!2.20e-19!59;UBERON:0000490!6.16e-19!148;UBERON:0005256!2.32e-18!122;UBERON:0000486!2.33e-18!83;UBERON:0002329!4.45e-18!71;UBERON:0003059!4.45e-18!71;UBERON:0007282!4.45e-18!71;UBERON:0004290!4.45e-18!71;UBERON:0009618!4.45e-18!71;UBERON:0007524!5.00e-18!73;UBERON:0003104!7.87e-18!160;UBERON:0009142!7.87e-18!160;UBERON:0003077!9.18e-18!72;UBERON:0007285!9.18e-18!72;UBERON:0003914!1.36e-17!117;UBERON:0001637!2.32e-16!42;UBERON:0003509!2.32e-16!42;UBERON:0004572!2.32e-16!42;UBERON:0000475!4.18e-16!264;UBERON:0002385!1.49e-15!64;UBERON:0001015!1.49e-15!64;UBERON:0000383!1.49e-15!64;UBERON:0001134!2.51e-15!62;UBERON:0002036!2.51e-15!62;UBERON:0003082!2.51e-15!62;UBERON:0001009!4.45e-14!112;UBERON:0004535!5.31e-14!109;UBERON:0002100!5.85e-14!199;UBERON:0000119!8.29e-14!309;UBERON:0000483!1.35e-13!306;UBERON:0003102!2.11e-13!99;UBERON:0000468!8.79e-13!656;UBERON:0004573!2.25e-12!33;UBERON:0004571!2.25e-12!33;UBERON:0000481!4.09e-12!342;UBERON:0000467!1.10e-10!624;UBERON:0000480!1.47e-10!625;UBERON:0000477!4.81e-10!373;UBERON:0002199!1.63e-09!46;UBERON:0002416!1.63e-09!46;UBERON:0004111!2.48e-09!240;UBERON:0000926!3.45e-09!315;UBERON:0004120!3.45e-09!315;UBERON:0006603!3.45e-09!315;UBERON:0002097!8.78e-08!41;UBERON:0004923!2.33e-07!66;UBERON:0000947!3.51e-07!21;UBERON:0010191!3.51e-07!21;UBERON:0006914!5.42e-07!25;UBERON:0003103!8.88e-07!68
|ontology_enrichment_uberon=UBERON:0004872!3.11e-21!83;UBERON:0002049!4.88e-21!78;UBERON:0007798!4.88e-21!78;UBERON:0007503!1.05e-20!78;UBERON:0000055!6.74e-20!68;UBERON:0007500!2.20e-19!59;UBERON:0001981!2.20e-19!59;UBERON:0004537!2.20e-19!59;UBERON:0006965!2.20e-19!59;UBERON:0000490!6.16e-19!148;UBERON:0005256!2.32e-18!122;UBERON:0000486!2.33e-18!83;UBERON:0002329!4.45e-18!71;UBERON:0003059!4.45e-18!71;UBERON:0007282!4.45e-18!71;UBERON:0004290!4.45e-18!71;UBERON:0009618!4.45e-18!71;UBERON:0007524!5.00e-18!73;UBERON:0003104!7.87e-18!160;UBERON:0009142!7.87e-18!160;UBERON:0003077!9.18e-18!72;UBERON:0007285!9.18e-18!72;UBERON:0003914!1.36e-17!117;UBERON:0001637!2.32e-16!42;UBERON:0003509!2.32e-16!42;UBERON:0004572!2.32e-16!42;UBERON:0000475!4.18e-16!264;UBERON:0002385!1.49e-15!64;UBERON:0001015!1.49e-15!64;UBERON:0000383!1.49e-15!64;UBERON:0001134!2.51e-15!62;UBERON:0002036!2.51e-15!62;UBERON:0003082!2.51e-15!62;UBERON:0001009!4.45e-14!112;UBERON:0004535!5.31e-14!109;UBERON:0002100!5.85e-14!199;UBERON:0000119!8.29e-14!309;UBERON:0000483!1.35e-13!306;UBERON:0003102!2.11e-13!99;UBERON:0000468!8.79e-13!656;UBERON:0004573!2.25e-12!33;UBERON:0004571!2.25e-12!33;UBERON:0000481!4.09e-12!342;UBERON:0000467!1.10e-10!624;UBERON:0000480!1.47e-10!625;UBERON:0000477!4.81e-10!373;UBERON:0002199!1.63e-09!46;UBERON:0002416!1.63e-09!46;UBERON:0004111!2.48e-09!240;UBERON:0000926!3.45e-09!315;UBERON:0004120!3.45e-09!315;UBERON:0006603!3.45e-09!315;UBERON:0002097!8.78e-08!41;UBERON:0004923!2.33e-07!66;UBERON:0000947!3.51e-07!21;UBERON:0010191!3.51e-07!21;UBERON:0006914!5.42e-07!25;UBERON:0003103!8.88e-07!68
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}}
}}

Revision as of 14:53, 26 November 2012


Full id: C1434_Olfactory_leiomyoma_Adipocyte_Hair_tenocyte_Preadipocyte_Smooth



Phase1 CAGE Peaks

Hg19::chr17:40556364..40556401,-p@chr17:40556364..40556401
-
Hg19::chr17:40556677..40556728,-p@chr17:40556677..40556728
-
Hg19::chr17:40557069..40557101,-p8@PTRF
Hg19::chr17:40557111..40557154,-p5@PTRF
Hg19::chr17:40557183..40557202,-p10@PTRF
Hg19::chr17:40557206..40557266,-p6@PTRF


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
splanchnic layer of lateral plate mesoderm3.11e-2183
vasculature4.88e-2178
vascular system4.88e-2178
epithelial vesicle1.05e-2078
vessel6.74e-2068
epithelial tube open at both ends2.20e-1959
blood vessel2.20e-1959
blood vasculature2.20e-1959
vascular cord2.20e-1959
unilaminar epithelium6.16e-19148
trunk mesenchyme2.32e-18122
multilaminar epithelium2.33e-1883
somite4.45e-1871
presomitic mesoderm4.45e-1871
presumptive segmental plate4.45e-1871
dermomyotome4.45e-1871
trunk paraxial mesoderm4.45e-1871
dense mesenchyme tissue5.00e-1873
mesenchyme7.87e-18160
entire embryonic mesenchyme7.87e-18160
paraxial mesoderm9.18e-1872
presumptive paraxial mesoderm9.18e-1872
epithelial tube1.36e-17117
artery2.32e-1642
arterial blood vessel2.32e-1642
arterial system2.32e-1642
organism subdivision4.18e-16264
muscle tissue1.49e-1564
musculature1.49e-1564
musculature of body1.49e-1564
skeletal muscle tissue2.51e-1562
striated muscle tissue2.51e-1562
myotome2.51e-1562
circulatory system4.45e-14112
cardiovascular system5.31e-14109
trunk5.85e-14199
cell layer8.29e-14309
epithelium1.35e-13306
surface structure2.11e-1399
multi-cellular organism8.79e-13656
systemic artery2.25e-1233
systemic arterial system2.25e-1233
multi-tissue structure4.09e-12342
anatomical system1.10e-10624
anatomical group1.47e-10625
anatomical cluster4.81e-10373
integument1.63e-0946
integumental system1.63e-0946
anatomical conduit2.48e-09240
mesoderm3.45e-09315
mesoderm-derived structure3.45e-09315
presumptive mesoderm3.45e-09315
skin of body8.78e-0841
organ component layer2.33e-0766
aorta3.51e-0721
aortic system3.51e-0721
squamous epithelium5.42e-0725
compound organ8.88e-0768


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

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