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MCL coexpression mm9:322: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002106!7.02e-07!6;UBERON:0004457!7.02e-07!6;UBERON:0000042!7.02e-07!6;UBERON:0004854!7.02e-07!6;UBERON:0009034!7.02e-07!6;UBERON:0002095!7.02e-07!6;UBERON:0004782!7.02e-07!6;UBERON:0003281!7.02e-07!6;UBERON:0009664!7.02e-07!6;UBERON:0002296!7.02e-07!6;UBERON:0005602!7.02e-07!6;UBERON:0001179!7.02e-07!6;UBERON:0006293!7.02e-07!6
|ontology_enrichment_uberon=UBERON:0002106!7.02e-07!6;UBERON:0004457!7.02e-07!6;UBERON:0000042!7.02e-07!6;UBERON:0004854!7.02e-07!6;UBERON:0009034!7.02e-07!6;UBERON:0002095!7.02e-07!6;UBERON:0004782!7.02e-07!6;UBERON:0003281!7.02e-07!6;UBERON:0009664!7.02e-07!6;UBERON:0002296!7.02e-07!6;UBERON:0005602!7.02e-07!6;UBERON:0001179!7.02e-07!6;UBERON:0006293!7.02e-07!6
|tfbs_overrepresentation_for_novel_motifs=0.653885,0.209046,0.591347,0.376992,0.968363,0.398187,0.538273,0.856869,0.185974,0.514602,0.469093,0.51908,0.171442,0.558008,0.672427,0,0.333505,0.140166,0.300991,0.785591,0.506129,0.123805,0.556548,0.961577,0.609268,1.77913,0.481302,0.138754,0.0537016,1.40329,0.13045,0.416414,0.587062,0.411336,0.378427,2.88646,0.128707,0.513348,0.492112,1.79812,0.0362834,0.824637,0.309443,0.04385,0.525057,0.729854,1.37063,1.42729,0.13582,0.445033,0.85605,0.228569,0.499975,0.538915,0.554419,0.195691,0.212299,0.166575,0.258637,0.194311,1.0329,0.66335,0.396933,0.836197,0.20328,0.342909,0.678037,1.00855,0.395762,0.867464,0.257427,0.180319,0.0258637,0.584436,0.660318,0.386101,0.411083,0.263199,0.38541,0.515733,0.596875,0.347414,0.234292,0.322554,0.48244,0.0253614,0.214763,0.531868,0.275409,1.16606,0.74267,0.486763,0.427209,0.637867,0.255947,0.224705,0.332811,0.429584,0.271907,0.436104,0.0315985,0.416179,0.523506,0.320141,0.31931,0.415447,0.367229,0.145827,0.0700831,0.510198,0.307666,0.525078,0.068441,0.477109,0.749248,0.142314,0.271739,0.382478,0.334542,0.125121,0.589296,0.294572,1.78604,0.726359,0.800032,0.388466,1.05137,0.421488,0.67664,0.361313,0.508573,0.366432,0.649498,0.205008,1.81381,0.057122,0.328991,0.828232,0.723554,1.52843,1.13499,0.682379,0.219341,1.0886,0.31422,0.133739,0.752825,1.4892,0.332285,0.346748,0.340986,0.101696,0.540306,0.235071,0.590347,0.613593,0.229288,0.179236,0.0944954,0.0999378,0.732404,0.481698,1.00924,0.0910449,0.837993,0.578243,0.302433,0.173777,0.116093
}}
}}

Revision as of 18:10, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:79229739..79229762,-p3@Rnf126
Mm9::chr15:103082088..103082136,-p2@Nfe2
Mm9::chr15:12754339..12754359,-p2@6030458C11Rik
Mm9::chr2:172859030..172859072,-p@chr2:172859030..172859072
-
Mm9::chr2:172859573..172859595,+p@chr2:172859573..172859595
+
Mm9::chr2:28477452..28477483,-p1@Gfi1b
Mm9::chr3:101969817..101969832,-p3@Vangl1
Mm9::chr3:153512829..153512857,+p@chr3:153512829..153512857
+
Mm9::chr5:74461687..74461700,-p5@Usp46
Mm9::chr6:86028031..86028057,+p2@Add2
Mm9::chr6:86028064..86028083,+p4@Add2
Mm9::chr6:90980074..90980078,-p5@Nup210
Mm9::chr7:134910987..134911000,+p@chr7:134910987..134911000
+
Mm9::chr7:150191643..150191662,+p5@Tspan32
Mm9::chr7:150191675..150191689,+p6@Tspan32
Mm9::chr7:26472857..26472901,+p@chr7:26472857..26472901
+
Mm9::chr7:4693422..4693437,+p6@Suv420h2
Mm9::chr7:51723421..51723440,+p1@Josd2
Mm9::chr7:87343450..87343514,+p2@Sema4b
Mm9::chr9:21766830..21766841,-p@chr9:21766830..21766841
-
Mm9::chr9:21940098..21940109,-p10@Acp5
Mm9::chr9:21940119..21940168,-p4@Acp5
Mm9::chrX:45696879..45696900,+p3@Bcorl1
Mm9::chrX:7544943..7545001,-p1@Gata1
Mm9::chrX:7849399..7849430,+p@chrX:7849399..7849430
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
megakaryocyte-erythroid progenitor cell1.60e-089

Uber Anatomy
Ontology termp-valuen
spleen7.02e-076
cavity lining7.02e-076
serous membrane7.02e-076
gastrointestinal system mesentery7.02e-076
stomach region7.02e-076
mesentery7.02e-076
gastrointestinal system serosa7.02e-076
mesentery of stomach7.02e-076
gut mesentery7.02e-076
dorsal mesentery7.02e-076
dorsal mesogastrium7.02e-076
peritoneal cavity7.02e-076
spleen primordium7.02e-076


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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