NonredundantMotifs:10: Difference between revisions
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|motif_cluster_2013_march_motif_members= /SWISSREGULON:MYOD1.p2~ZEB1.p2~ZNF238.p2~TAL1_TCF{3,4,12}.p2~SNAI1..3.p2~LMO2.p2 /HOMER:NEUROD1_Isl...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |entrez_gene_id= | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:MYOD1.p2~ZEB1.p2~ZNF238.p2~TAL1_TCF | |motif_cluster_2013_march_motif_members= /JASPAR:MA0091.1;TAL1::TCF3 /HOCOMOCO:SNAI2_f1~NDF1_f1~ITF2_f1~ZN238_f1~TFE2_f2~TWST1_f1~TAL1_f2~SNAI1_f1~TAL1_f1 /SWISSREGULON:MYOD1.p2~ZEB1.p2~ZNF238.p2~TAL1_TCF(3,4,12).p2~SNAI1..3.p2~LMO2.p2 /HOMER:NEUROD1_Islet-NeuroD1-ChIP-Seq(GSE30298)~OLIG2_Neuron-Olig2-ChIP-Seq(GSE30882)~TAL1_motifA;HPC7-Scl-ChIP-Seq~ATOH1_Cerebellum-Atoh1-ChIP-Seq /UNIPROBE:Tcfe2a_primary;SCI09~Myf6_primary;SCI09~Tcfe2a_secondary;SCI09 | ||
|name=known10 | |name=known10 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known10
- db :SWISSREGULON
- Id :ZEB1.p2
- name :
- score :0.8111344501518296
- External refs:
- Internal refs:
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Sub Motif Members
