NonredundantMotifs:22: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=5914
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NR1H4.p2~RORA.p2~RXR{A,B,G}.p2 /HOMER:NR1H4_Liver-FXR-ChIP-Seq /JASPAR:MA0072.1;...") |
No edit summary |
||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|entrez_gene_id=5914 | |entrez_gene_id=5914 | ||
|motif_cluster_2013_march_motif_members= / | |motif_cluster_2013_march_motif_members= /JASPAR:MA0072.1;RORA_2 /HOCOMOCO:NR1H4_f1~NR1D1_f1~RORG_f1~RORA_f1 /SWISSREGULON:RXR(A,B,G).p2~NR1H4.p2~RORA.p2 /HOMER:NR1H4_Liver-FXR-ChIP-Seq /UNIPROBE:Hnf4a_primary;SCI09~Nr2f2_secondary;SCI09~Esrra_secondary;SCI09~Rara_secondary;SCI09~Rxra_primary;SCI09 | ||
|name=known22 | |name=known22 | ||
|representative_motif_db=UNIPROBE | |representative_motif_db=UNIPROBE | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known22
- db :UNIPROBE
- Id :Rara_secondary
- name :SCI09
- score :0.868119759774104
- External refs:
- Internal refs:
| Motif matrix | |
|---|---|
|
Sub Motif Members
