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(Created page with "{{Known_motif |entrez_gene_id= |motif_cluster_2013_march_motif_members= /SWISSREGULON:DMAP1_NCOR{1,2}_SMARC.p2~MYB.p2~MYBL2.p2 /HOMER:MYB_ERMYB-Myb-ChIPSeq(GSE22095)~MYBL2...")
 
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{{Known_motif
{{Known_motif
|entrez_gene_id=
|entrez_gene_id=
|motif_cluster_2013_march_motif_members= /SWISSREGULON:DMAP1_NCOR{1,2}_SMARC.p2~MYB.p2~MYBL2.p2 /HOMER:MYB_ERMYB-Myb-ChIPSeq(GSE22095)~MYBL2_Hela-BMYB-ChIPSeq(GSE27030) /JASPAR:MA0100.1;Myb /HOCOMOCO:OVOL1_f1~MYB_f1 /UNIPROBE:Myb_primary;SCI09~Mybl1_primary;SCI09~Mybl1_secondary;SCI09~Myb_secondary;SCI09
|motif_cluster_2013_march_motif_members= /JASPAR:MA0100.1;Myb /HOCOMOCO:OVOL1_f1~MYB_f1 /SWISSREGULON:DMAP1_NCOR(1,2)_SMARC.p2~MYB.p2~MYBL2.p2 /HOMER:MYB_ERMYB-Myb-ChIPSeq(GSE22095)~MYBL2_Hela-BMYB-ChIPSeq(GSE27030) /UNIPROBE:Myb_primary;SCI09~Mybl1_primary;SCI09~Mybl1_secondary;SCI09~Myb_secondary;SCI09
|name=known28
|name=known28
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=DMAP1_NCOR{1,2}_SMARC.p2
|representative_motif_id=DMAP1_NCOR(1,2)_SMARC.p2
|representative_motif_name=  
|representative_motif_name=  
|score=0.2074314320749557
|score=0.2074314320749557

Revision as of 16:20, 1 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known28
  • db :SWISSREGULON
  • Id :DMAP1_NCOR(1,2)_SMARC.p2
  • name  :
  • score :0.2074314320749557
  • External refs:
  • Internal refs:


Motif matrix
{{{PWM}}}

Sub Motif Members