NonredundantMotifs:33: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;0.114461549089786;0.345602359480712;0.289353230115255;0.250582861314247!2;0.192593287280278;0.25084449306752;0.116249624289927;0.440312595362275!3;0.338837829775925;0.304929261569313;0.195842542660874;0.160390365993888!4;0.312050850750647;0.115094331804079;0.162464735073906;0.410390082371368!5;0.143974706097306;0.600491735865346;0.123348444974066;0.132185113063283!6;0.0787505509789436;0.715072296499343;0.135182198816251;0.0709949537054629!7;0.146190741113154;0.685571209381871;0.0697987838749943;0.0984392656299799!8;0.137287160991388;0.646077925711715;0.126428373195834;0.0902065401010639!9;0.335099485079304;0.092260135908066;0.371509553068663;0.201130825943967!10;0.0330897683707383;0.631176315968281;0.0742775759527978;0.261456339708183!11;0.117515920775723;0.61933603047287;0.100945801616778;0.16220224713463!12;0.114768535685947;0.627362280511385;0.089838663325904;0.168030520476764!13;0.195787120472725;0.252056868434976;0.220803412375946;0.331352598716354!14;0.415354533744615;0.120731214471652;0.281372401522544;0.182541850261189!15;0.111178497182706;0.21707870954717;0.245769053622707;0.425973739647418!16;0.191516791851432;0.296951942197243;0.153369544849602;0.358161721101723 | |||
|entrez_gene_id=430 | |entrez_gene_id=430 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /SWISSREGULON:ZNF148.p2~KLF4.p3 /JASPAR:MA0039.2;Klf4 /HOMER:KLF4_mES-Klf4-ChIP-Seq~KLF1_Erythrocyte-Klf1-ChIP-Seq /UNIPROBE:Ascl2_secondary;SCI09~Sox13_secondary;SCI09~Klf7_primary;SCI09 /HOCOMOCO:KLF1_f1~KLF4_f2~KLF3_f1 | ||
|name=known33 | |name=known33 | ||
|representative_motif_db=UNIPROBE | |representative_motif_db=UNIPROBE | ||
Revision as of 10:46, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known33
- db :UNIPROBE
- Id :Ascl2_secondary
- name :SCI09
- score :3.3437027120298133
- External refs:
- Internal refs:
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Sub Motif Members
