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NonredundantMotifs:22: Difference between revisions

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|PWM=P0;A;C;G;T!1;0.452790685382596;0.238472502367781;0.150607963167503;0.15812884908212!2;0.126444202625904;0.0940122740755787;0.487075813557476;0.292467709741041!3;0.434627435132116;0.239256199886739;0.156125493838153;0.169990871142993!4;0.155277836462267;0.149228013587864;0.515564824923915;0.179929325025954!5;0.0222658998560708;0.469313799049504;0.0592401242927527;0.449180176801673!6;0.0150357867265764;0.363659944262162;0.45159396411303;0.169710304898231!7;0.0451886000259906;0.0997597759314082;0.821515705127828;0.0335359189147732!8;0.00776280084908986;0.00985731701193892;0.907047486281808;0.0753323958571634!9;0.0134527602102177;0.00395188759757316;0.903170443044843;0.0794249091473659!10;0.0407142250402703;0.0273708009069133;0.0279965049673275;0.903918469085489!11;0.017022968201438;0.852074842896406;0.0396557342304163;0.0912464546717396!12;0.801114499925933;0.00439081139945169;0.164886133951546;0.0296085547230698!13;0.394694584614395;0.235752140477909;0.182579862336018;0.186973412571678!14;0.0876540913824464;0.156911410725238;0.450590709112785;0.304843788779531!15;0.118927067859795;0.222730319934294;0.284209582007194;0.374133030198716!16;0.308787276712257;0.296358210904117;0.19786822363726;0.196986288746366
|PWM=P0;A;C;G;T!1;0.452790685382596;0.238472502367781;0.150607963167503;0.15812884908212!2;0.126444202625904;0.0940122740755787;0.487075813557476;0.292467709741041!3;0.434627435132116;0.239256199886739;0.156125493838153;0.169990871142993!4;0.155277836462267;0.149228013587864;0.515564824923915;0.179929325025954!5;0.0222658998560708;0.469313799049504;0.0592401242927527;0.449180176801673!6;0.0150357867265764;0.363659944262162;0.45159396411303;0.169710304898231!7;0.0451886000259906;0.0997597759314082;0.821515705127828;0.0335359189147732!8;0.00776280084908986;0.00985731701193892;0.907047486281808;0.0753323958571634!9;0.0134527602102177;0.00395188759757316;0.903170443044843;0.0794249091473659!10;0.0407142250402703;0.0273708009069133;0.0279965049673275;0.903918469085489!11;0.017022968201438;0.852074842896406;0.0396557342304163;0.0912464546717396!12;0.801114499925933;0.00439081139945169;0.164886133951546;0.0296085547230698!13;0.394694584614395;0.235752140477909;0.182579862336018;0.186973412571678!14;0.0876540913824464;0.156911410725238;0.450590709112785;0.304843788779531!15;0.118927067859795;0.222730319934294;0.284209582007194;0.374133030198716!16;0.308787276712257;0.296358210904117;0.19786822363726;0.196986288746366
|entrez_gene_id=5914
|entrez_gene_id=5914
|motif_cluster_2013_march_motif_members= /JASPAR:MA0072.1;RORA_2 /SWISSREGULON:RXR(A,B,G).p2~NR1H4.p2~RORA.p2 /HOMER:NR1H4_Liver-FXR-ChIP-Seq /UNIPROBE:Hnf4a_primary;SCI09~Nr2f2_secondary;SCI09~Esrra_secondary;SCI09~Rara_secondary;SCI09~Rxra_primary;SCI09 /HOCOMOCO:NR1H4_f1~NR1D1_f1~RORG_f1~RORA_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:NR1D1_f1~NR1H4_f1~RORG_f1~RORA_f1 /HOMER:NR1H4_Liver-FXR-ChIP-Seq /JASPAR:MA0072.1;RORA_2 /SWISSREGULON:NR1H4.p2~RXR(A,B,G).p2~RORA.p2 /UNIPROBE:Esrra_secondary;SCI09~Hnf4a_primary;SCI09~Rara_secondary;SCI09~Rxra_primary;SCI09~Nr2f2_secondary;SCI09
|name=known22
|name=non-redundant22
|representative_motif_db=UNIPROBE
|representative_motif_db=UNIPROBE
|representative_motif_id=Rara_secondary
|representative_motif_id=Rara_secondary
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:46, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant22
  • db :UNIPROBE
  • Id :Rara_secondary
  • name :SCI09
  • score :0.868119759774104
  • External refs:
EntrezGene:5914
UniProt:5914

  • Internal refs:
EntrezGene:5914


Motif matrix
P0ACGT
10.4527906853825960.2384725023677810.1506079631675030.15812884908212
20.1264442026259040.09401227407557870.4870758135574760.292467709741041
30.4346274351321160.2392561998867390.1561254938381530.169990871142993
40.1552778364622670.1492280135878640.5155648249239150.179929325025954
50.02226589985607080.4693137990495040.05924012429275270.449180176801673
60.01503578672657640.3636599442621620.451593964113030.169710304898231
70.04518860002599060.09975977593140820.8215157051278280.0335359189147732
80.007762800849089860.009857317011938920.9070474862818080.0753323958571634
90.01345276021021770.003951887597573160.9031704430448430.0794249091473659
100.04071422504027030.02737080090691330.02799650496732750.903918469085489
110.0170229682014380.8520748428964060.03965573423041630.0912464546717396
120.8011144999259330.004390811399451690.1648861339515460.0296085547230698
130.3946945846143950.2357521404779090.1825798623360180.186973412571678
140.08765409138244640.1569114107252380.4505907091127850.304843788779531
150.1189270678597950.2227303199342940.2842095820071940.374133030198716
160.3087872767122570.2963582109041170.197868223637260.196986288746366

Sub Motif Members

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