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NonredundantMotifs:28: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=PO;A;C;G;T!1;66.182994;8.551344;2.003484;282.864563999999!2;50.118493;1.767241;170.113212;137.60344!3;93.8878240000001;1.982836;79.616861;184.114865!4;0.561712;296.779055;0.731482;61.530137!5;155.456632;19.389437;177.790795;6.965522!6;1.257013;35.383744;317.793158999999;5.16847!7;0.445108;0;0;359.157278!8;0;0;0;359.602386
|PWM=PO;A;C;G;T!1;424;566;470;548!2;622;550;28;808!3;1990;2;2;14!4;2002;2;2;2!5;16;1988;2;2!6;259;492;608;649!7;2;2;2002;2!8;420;774;133;681!9;323;868;8;809!10;635;470;602;301
|entrez_gene_id=DMAP1_NCOR(1,2)_SMARC
|entrez_gene_id=4605
|motif_cluster_2013_march_motif_members= /JASPAR:MA0100.1;Myb /SWISSREGULON:DMAP1_NCOR(1,2)_SMARC.p2~MYB.p2~MYBL2.p2 /HOMER:MYB_ERMYB-Myb-ChIPSeq(GSE22095)~MYBL2_Hela-BMYB-ChIPSeq(GSE27030) /UNIPROBE:Myb_primary;SCI09~Mybl1_primary;SCI09~Mybl1_secondary;SCI09~Myb_secondary;SCI09 /HOCOMOCO:OVOL1_f1~MYB_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:OVOL1_f1~MYB_f1 /HOMER:MYBL2_Hela-BMYB-ChIPSeq(GSE27030)~MYB_ERMYB-Myb-ChIPSeq(GSE22095) /JASPAR:MA0100.1;Myb /SWISSREGULON:MYB.p2~MYBL2.p2~DMAP1_NCOR(1,2)_SMARC.p2 /UNIPROBE:Mybl1_primary;SCI09~Myb_primary;SCI09~Mybl1_secondary;SCI09~Myb_secondary;SCI09
|name=known28
|name=non-redundant28
|representative_motif_db=SWISSREGULON
|representative_motif_db=HOMER
|representative_motif_id=DMAP1_NCOR(1,2)_SMARC.p2
|representative_motif_id=MYBL2_Hela-BMYB-ChIPSeq(GSE27030)
|representative_motif_name=DMAP1_NCOR(1,2)_SMARC
|representative_motif_name=  
|score=0.2074314320749557
|score=0.18323713605328915
|uniprot_entry_name=DMAP1_NCOR(1,2)_SMARC
|uniprot_entry_name=MYBB_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:46, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant28
  • db :HOMER
  • Id :MYBL2_Hela-BMYB-ChIPSeq(GSE27030)
  • name  :
  • score :0.18323713605328915
  • External refs:
EntrezGene:4605
UniProt:4605

  • Internal refs:
EntrezGene:4605


Motif matrix
POACGT
1424566470548
262255028808
319902214
42002222
516198822
6259492608649
72220022
8420774133681
93238688809
10635470602301

Sub Motif Members