Personal tools

NonredundantMotifs:123: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 2: Line 2:
|PWM=P0;A;C;G;T!1;1.344309;25.356356;0.132901;3.664845!2;8.241792;6.841129;3.24168;12.17381!3;1.861585;5.693302;18.743901;4.199623!4;0.7003;2.252222;0.22213;27.323759!5;24.748232;0.14443;2.095333;3.510416!6;23.760977;1.927123;0;4.810311!7;9.227649;3.049867;3.302279;14.918616!8;0;0.478109;0;30.020302!9;1.772144;0.169098;27.579629;0.97754
|PWM=P0;A;C;G;T!1;1.344309;25.356356;0.132901;3.664845!2;8.241792;6.841129;3.24168;12.17381!3;1.861585;5.693302;18.743901;4.199623!4;0.7003;2.252222;0.22213;27.323759!5;24.748232;0.14443;2.095333;3.510416!6;23.760977;1.927123;0;4.810311!7;9.227649;3.049867;3.302279;14.918616!8;0;0.478109;0;30.020302!9;1.772144;0.169098;27.579629;0.97754
|entrez_gene_id=MSX1,2
|entrez_gene_id=MSX1,2
|motif_cluster_2013_march_motif_members= /SWISSREGULON:TLX2.p2~MSX1,2.p2
|motif_cluster_2013_march_motif_members= /SWISSREGULON:MSX1,2.p2~TLX2.p2
|name=known123
|name=non-redundant123
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=MSX1,2.p2
|representative_motif_id=MSX1,2.p2
Line 12: Line 12:
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant123
  • db :SWISSREGULON
  • Id :MSX1,2.p2
  • name :MSX1,2
  • score :0.047883748605647904
  • External refs:
EntrezGene:MSX1
UniProt:MSX1

EntrezGene:2
UniProt:2

  • Internal refs:
EntrezGene:MSX1

EntrezGene:2


Motif matrix
P0ACGT
11.34430925.3563560.1329013.664845
28.2417926.8411293.2416812.17381
31.8615855.69330218.7439014.199623
40.70032.2522220.2221327.323759
524.7482320.144432.0953333.510416
623.7609771.92712304.810311
79.2276493.0498673.30227914.918616
800.478109030.020302
91.7721440.16909827.5796290.97754

Sub Motif Members