FFCP PHASE1:Hg19::chr10:105437909..105437989,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9644|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=23664|TSSclassifier=W|UniProt=B7Z9C6|association_with_transcript=0bp_to_ENST00000540321_5end|description=CAGE_peak_4_at_SH3PXD2A_5end|id=chr10:105437909..105437989,-|ontology_enrichment_celltype=CL:0000048!1.26e-16!430;CL:0000723!7.57e-16!436;CL:0000055!2.25e-15!180;CL:0000034!2.30e-15!444;CL:0000057!3.91e-15!75;CL:0000183!8.63e-15!59;CL:0000187!1.13e-14!54;CL:0000680!2.06e-14!57;CL:0000056!2.06e-14!57;CL:0000355!2.06e-14!57;CL:0000192!1.49e-13!42;CL:0000514!1.49e-13!42;CL:0000393!4.86e-11!60;CL:0000211!4.86e-11!60;CL:0000359!4.32e-10!32;CL:0002320!6.86e-09!365;CL:0000134!5.16e-08!358;CL:0002620!8.68e-08!23|ontology_enrichment_celltype_v019=CL:0000192;3.14e-10;43!CL:0000359;9.64e-10;32!CL:0000187;3.31e-09;55!CL:0000134;3.44e-08;55!CL:0000057;4.34e-08;73!CL:0000723;4.92e-08;61!CL:0002620;8.80e-08;23!CL:0000393;3.71e-07;61!CL:0000211;3.71e-07;61!CL:0000048;4.31e-07;58|ontology_enrichment_celltype_v019_2=CL:0000048,5.09e-20,427;CL:0000723,6.16e-19,433;CL:0000034,2.88e-18,441;CL:0000057,1.24e-16,76;CL:0000187,4.67e-16,55;CL:0000680,4.85e-15,58;CL:0000056,4.85e-15,58;CL:0000355,4.85e-15,58;CL:0000192,1.46e-14,43;CL:0000514,1.46e-14,43;CL:0000393,1.65e-12,61;CL:0000211,1.65e-12,61;CL:0002320,8.37e-11,361;CL:0000359,2.79e-10,32;CL:0000134,9.18e-10,354;CL:0002620,7.28e-08,23;CL:0000219,3.00e-07,386;CL:0000222,4.67e-07,121|ontology_enrichment_development_v019=CL:0000514;3.14e-10;43!CL:0000355;1.16e-08;58|ontology_enrichment_disease=DOID:2394!1.39e-08!14|ontology_enrichment_disease_v019=DOID:2394;1.23e-09;14|ontology_enrichment_disease_v019_2=DOID:2394,1.73e-09,14|ontology_enrichment_uberon=UBERON:0000914!4.40e-16!83;UBERON:0002329!4.40e-16!83;UBERON:0003077!4.40e-16!83;UBERON:0003059!4.40e-16!83;UBERON:0007282!4.40e-16!83;UBERON:0009618!4.40e-16!83;UBERON:0007285!4.40e-16!83;UBERON:0004290!3.66e-15!70;UBERON:0002385!1.15e-13!63;UBERON:0001015!1.15e-13!63;UBERON:0000383!1.15e-13!63;UBERON:0001134!1.33e-13!61;UBERON:0002036!1.33e-13!61;UBERON:0003082!1.33e-13!61;UBERON:0000486!9.57e-11!82;UBERON:0002384!1.87e-08!375;UBERON:0002199!2.95e-08!45;UBERON:0002416!2.95e-08!45;UBERON:0002097!3.76e-07!40;UBERON:0005256!4.29e-07!143;UBERON:0004872!7.59e-07!84|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002329,5.28e-15,71;UBERON:0003059,5.28e-15,71;UBERON:0007282,5.28e-15,71;UBERON:0004290,5.28e-15,71;UBERON:0009618,5.28e-15,71;UBERON:0007524,6.20e-15,73;UBERON:0003077,1.78e-14,72;UBERON:0007285,1.78e-14,72;UBERON:0002385,4.43e-14,64;UBERON:0001015,4.43e-14,64;UBERON:0000383,4.43e-14,64;UBERON:0001134,5.39e-14,62;UBERON:0002036,5.39e-14,62;UBERON:0003082,5.39e-14,62;UBERON:0007503,1.65e-12,78;UBERON:0000486,5.90e-11,83;UBERON:0002384,5.35e-10,371;UBERON:0002199,2.30e-09,46;UBERON:0002416,2.30e-09,46;UBERON:0000926,4.06e-08,315;UBERON:0004120,4.06e-08,315;UBERON:0006603,4.06e-08,315;UBERON:0002097,4.07e-08,41;UBERON:0005256,6.27e-08,122|phase1_expression=5.63202975738726,15.4152377201508,18.4650269365722,10.007329835313,16.0905993993824,14.8297549097063,5.06599756336621,4.42203911398782,3.65659879479774,0.491467873003018,0,1.31064823278103,1.84636884759917,2.47532705920093,4.63956326019082,12.7741777825837,14.4646686725754,6.57279081348636,9.75865597581014,0,0,0,0,0,0.125542639594803,0.152826811495903,0.164201178899891,0.157421562627358,2.75354993794233,2.68680578668049,1.54816123316076,0.919421224478927,0,0,0,0.853015394924529,0.880801318004542,1.66198622559563,5.21415563422368,3.03815219002193,0,0.647787332037959,0,0.290796477559129,0,1.21292030593908,0.464858073811369,0.822335776043652,1.54853185447552,1.1507695692886,0.768482119587302,0.709446689665756,0.344745680736619,0,1.35426486594342,2.07066573496865,0.545812300115692,2.9214052977861,0.918251677112708,2.24650318953266,8.31138263538754,0.329851300186716,0,0,0,1.70215567407342,1.24564449799115,0.75374599577023,1.0429658368404,3.25783267057675,1.81619850790011,1.10483290796269,2.21523671208619,1.90129757680748,1.06302149982522,0.419317291016752,3.36985893439485,0.300353785683013,0.48217676009124,1.99508920618874,0.99458338599545,0,0,1.09227722252426,0.889509253863555,2.98711155796555,0,0.574752439954483,0,0,5.69212969109448,7.04684627245127,10.7036503875064,3.96513985737078,3.36305137788922,1.05353633910031,11.6058764367162,12.9693551707224,19.7377439039529,2.17342444007882,20.8590250645498,14.203434172042,7.79306913631645,3.11949279278486,11.4896303915187,4.87374568083967,8.12411591295047,1.66518715643378,1.95089021339817,0.493313713811028,0,2.60822777161547,9.78691316869599,5.35081656179426,4.18142095219907,1.35971211237079,20.6939066545037,11.3397057009268,10.8798467568386,1.27426165729639,0.651083453856419,2.85135613334512,2.10805166708882,1.27986611154418,1.24930726552346,0.710331756132051,0,9.87873041801189,10.1627274397733,6.66192257860875,2.43806866313962,4.69490601792545,3.45228916977532,0.722878304769133,1.002675821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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9644 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23664 | |||
|TSSclassifier=W | |||
|UniProt=B7Z9C6 | |||
|association_with_transcript=0bp_to_ENST00000540321_5end | |||
|description=CAGE_peak_4_at_SH3PXD2A_5end | |||
|id=chr10:105437909..105437989,- | |||
|ontology_enrichment_celltype=CL:0000048!1.26e-16!430;CL:0000723!7.57e-16!436;CL:0000055!2.25e-15!180;CL:0000034!2.30e-15!444;CL:0000057!3.91e-15!75;CL:0000183!8.63e-15!59;CL:0000187!1.13e-14!54;CL:0000680!2.06e-14!57;CL:0000056!2.06e-14!57;CL:0000355!2.06e-14!57;CL:0000192!1.49e-13!42;CL:0000514!1.49e-13!42;CL:0000393!4.86e-11!60;CL:0000211!4.86e-11!60;CL:0000359!4.32e-10!32;CL:0002320!6.86e-09!365;CL:0000134!5.16e-08!358;CL:0002620!8.68e-08!23 | |||
|ontology_enrichment_celltype_v019=CL:0000192;3.14e-10;43!CL:0000359;9.64e-10;32!CL:0000187;3.31e-09;55!CL:0000134;3.44e-08;55!CL:0000057;4.34e-08;73!CL:0000723;4.92e-08;61!CL:0002620;8.80e-08;23!CL:0000393;3.71e-07;61!CL:0000211;3.71e-07;61!CL:0000048;4.31e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,5.09e-20,427;CL:0000723,6.16e-19,433;CL:0000034,2.88e-18,441;CL:0000057,1.24e-16,76;CL:0000187,4.67e-16,55;CL:0000680,4.85e-15,58;CL:0000056,4.85e-15,58;CL:0000355,4.85e-15,58;CL:0000192,1.46e-14,43;CL:0000514,1.46e-14,43;CL:0000393,1.65e-12,61;CL:0000211,1.65e-12,61;CL:0002320,8.37e-11,361;CL:0000359,2.79e-10,32;CL:0000134,9.18e-10,354;CL:0002620,7.28e-08,23;CL:0000219,3.00e-07,386;CL:0000222,4.67e-07,121 | |||
|ontology_enrichment_development_v019=CL:0000514;3.14e-10;43!CL:0000355;1.16e-08;58 | |||
|ontology_enrichment_disease=DOID:2394!1.39e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.23e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.73e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!4.40e-16!83;UBERON:0002329!4.40e-16!83;UBERON:0003077!4.40e-16!83;UBERON:0003059!4.40e-16!83;UBERON:0007282!4.40e-16!83;UBERON:0009618!4.40e-16!83;UBERON:0007285!4.40e-16!83;UBERON:0004290!3.66e-15!70;UBERON:0002385!1.15e-13!63;UBERON:0001015!1.15e-13!63;UBERON:0000383!1.15e-13!63;UBERON:0001134!1.33e-13!61;UBERON:0002036!1.33e-13!61;UBERON:0003082!1.33e-13!61;UBERON:0000486!9.57e-11!82;UBERON:0002384!1.87e-08!375;UBERON:0002199!2.95e-08!45;UBERON:0002416!2.95e-08!45;UBERON:0002097!3.76e-07!40;UBERON:0005256!4.29e-07!143;UBERON:0004872!7.59e-07!84 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,5.28e-15,71;UBERON:0003059,5.28e-15,71;UBERON:0007282,5.28e-15,71;UBERON:0004290,5.28e-15,71;UBERON:0009618,5.28e-15,71;UBERON:0007524,6.20e-15,73;UBERON:0003077,1.78e-14,72;UBERON:0007285,1.78e-14,72;UBERON:0002385,4.43e-14,64;UBERON:0001015,4.43e-14,64;UBERON:0000383,4.43e-14,64;UBERON:0001134,5.39e-14,62;UBERON:0002036,5.39e-14,62;UBERON:0003082,5.39e-14,62;UBERON:0007503,1.65e-12,78;UBERON:0000486,5.90e-11,83;UBERON:0002384,5.35e-10,371;UBERON:0002199,2.30e-09,46;UBERON:0002416,2.30e-09,46;UBERON:0000926,4.06e-08,315;UBERON:0004120,4.06e-08,315;UBERON:0006603,4.06e-08,315;UBERON:0002097,4.07e-08,41;UBERON:0005256,6.27e-08,122 | |||
|phase1_expression=5.63202975738726,15.4152377201508,18.4650269365722,10.007329835313,16.0905993993824,14.8297549097063,5.06599756336621,4.42203911398782,3.65659879479774,0.491467873003018,0,1.31064823278103,1.84636884759917,2.47532705920093,4.63956326019082,12.7741777825837,14.4646686725754,6.57279081348636,9.75865597581014,0,0,0,0,0,0.125542639594803,0.152826811495903,0.164201178899891,0.157421562627358,2.75354993794233,2.68680578668049,1.54816123316076,0.919421224478927,0,0,0,0.853015394924529,0.880801318004542,1.66198622559563,5.21415563422368,3.03815219002193,0,0.647787332037959,0,0.290796477559129,0,1.21292030593908,0.464858073811369,0.822335776043652,1.54853185447552,1.1507695692886,0.768482119587302,0.709446689665756,0.344745680736619,0,1.35426486594342,2.07066573496865,0.545812300115692,2.9214052977861,0.918251677112708,2.24650318953266,8.31138263538754,0.329851300186716,0,0,0,1.70215567407342,1.24564449799115,0.75374599577023,1.0429658368404,3.25783267057675,1.81619850790011,1.10483290796269,2.21523671208619,1.90129757680748,1.06302149982522,0.419317291016752,3.36985893439485,0.300353785683013,0.48217676009124,1.99508920618874,0.99458338599545,0,0,1.09227722252426,0.889509253863555,2.98711155796555,0,0.574752439954483,0,0,5.69212969109448,7.04684627245127,10.7036503875064,3.96513985737078,3.36305137788922,1.05353633910031,11.6058764367162,12.9693551707224,19.7377439039529,2.17342444007882,20.8590250645498,14.203434172042,7.79306913631645,3.11949279278486,11.4896303915187,4.87374568083967,8.12411591295047,1.66518715643378,1.95089021339817,0.493313713811028,0,2.60822777161547,9.78691316869599,5.35081656179426,4.18142095219907,1.35971211237079,20.6939066545037,11.3397057009268,10.8798467568386,1.27426165729639,0.651083453856419,2.85135613334512,2.10805166708882,1.27986611154418,1.24930726552346,0.710331756132051,0,9.87873041801189,10.1627274397733,6.66192257860875,2.43806866313962,4.69490601792545,3.45228916977532,0.722878304769133,1.00267582127178,0.579386075843295,0,0,0.472674085820339,0.221729397462564,0,2.88153966094968,0.728590576585084,0,0,0,0,22.8950999333128,30.3157302713468,10.4008100372278,0,1.72046919021225,0.694281003215189,0,0,0,0.208994966536811,0,0,1.67360306382335,5.23678112241891,1.52054421143703,4.39311703586705,0,0,0,0,0,0,0,0,2.63560834872127,0,0,10.933382937297,3.54565432660823,61.5702690781467,19.5048902109193,2.83734705758686,2.24271040056923,20.2823091886439,3.45334567784024,1.8672662123986,4.17603083416033,0.163461903113459,2.72443369760877,4.03323147135999,2.57753575017176,3.1216007683032,4.56377457235559,5.52960118041664,1.996386476944,0.647491777472526,0.98315564691574,5.9204709663919,1.10550885580591,6.71617577642475,55.8361342922565,39.8099756138477,5.46096817162816,12.9351265526923,1.5150250255866,2.00189631795143,7.20366700258876,2.19488810440419,7.04921930337745,27.944278956627,0.794025282120147,23.5000422752409,19.2201649936711,21.4051220171157,17.7053746689797,21.4349260815953,38.1307999267531,21.0312047654696,18.5653965465393,20.4617710838517,33.3212582002231,24.0250235456401,9.86040946594752,13.1353549231147,4.63459651847145,10.5127567232502,0.773043412653187,0.272746120590835,3.44165514466805,0.121973706129595,0,0.116193942869518,0.207322110030741,0,0,31.2899064659632,19.9404690839794,9.66944449467364,40.8643776668142,31.0408177117922,20.467076406893,15.0040374169511,20.7269485699795,19.7426211190985,15.033681642376,15.4225902422213,16.7190822118604,13.9317240238996,14.2356448070164,0,1.40241773803446,9.4662022606222,19.1111324801205,0,0,1.18157981336281,0,0.245976877086227,0.514703430895577,0.219500570817251,0,0.100528972411631,0.370353780634118,3.25808305310325,3.11980435583874,0,0.34779121492523,4.46153038096122,1.73239737313289,0.462985512576611,1.14152491340759,0,0,0,0,0,1.87467667973554,0.16798212819886,0.425325291727159,0,0,0,0,0.176096868026452,23.635405171648,6.05303804351238,51.0019431042575,3.93686944611448,1.90994212779139,5.86087236050235,3.4214489204541,0.514137463516618,2.40274446275134,6.85983438313388,0.784917590417525,0.43596006883328,0.7333828582095,42.4011227685511,17.8828222925941,6.762422020448,47.6029228686918,27.0419335969552,0.257207374262142,0,0.532844358032199,21.4466990487221,45.0375932474898,16.4648067356154,2.28015329005615,27.365180053176,7.91951872933429,10.8518175741451,16.5591357134056,20.8943551570499,0,0.502257091432126,0,0.239624855491583,0,0,6.22559618670591,0.61642896765115,0.716243852959582,0,7.48716888767323,9.48761329381876,5.39040752374943,0,0,0,0,0,0.749007023947182,0,2.90090859405225,1.59498939234882,4.00136416847742,2.71265023699736,32.2354835372751,21.0546206780651,32.8021023270584,29.6367779931564,5.41702979509894,0,2.0694614258501,0.664225598535437,1.65932251687533,17.811140965957,7.83204629850962,9.95115929051482,8.06395301879261,7.76571122947021,5.65656056358255,0.606255142892519,9.98612637062982,2.72151263996712,8.43566546583841,21.7916002069049,12.9103643439214,13.4546106718486,11.2575594794675,8.5252578206112,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| |||
|short_description=p4@SH3PXD2A | |||
}} |
Revision as of 11:32, 10 September 2013
Short description: | p4@SH3PXD2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_SH3PXD2A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000540321_5end |
EntrezGene: | SH3PXD2A |
HGNC: | 23664 |
UniProt: | B7Z9C6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 5.09e-20 | 427 |
somatic stem cell | 6.16e-19 | 433 |
stem cell | 2.88e-18 | 441 |
fibroblast | 1.24e-16 | 76 |
muscle cell | 4.67e-16 | 55 |
muscle precursor cell | 4.85e-15 | 58 |
myoblast | 4.85e-15 | 58 |
multi-potent skeletal muscle stem cell | 4.85e-15 | 58 |
smooth muscle cell | 1.46e-14 | 43 |
smooth muscle myoblast | 1.46e-14 | 43 |
electrically responsive cell | 1.65e-12 | 61 |
electrically active cell | 1.65e-12 | 61 |
connective tissue cell | 8.37e-11 | 361 |
vascular associated smooth muscle cell | 2.79e-10 | 32 |
mesenchymal cell | 9.18e-10 | 354 |
skin fibroblast | 7.28e-08 | 23 |
motile cell | 3.00e-07 | 386 |
mesodermal cell | 4.67e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
somite | 5.28e-15 | 71 |
presomitic mesoderm | 5.28e-15 | 71 |
presumptive segmental plate | 5.28e-15 | 71 |
dermomyotome | 5.28e-15 | 71 |
trunk paraxial mesoderm | 5.28e-15 | 71 |
dense mesenchyme tissue | 6.20e-15 | 73 |
paraxial mesoderm | 1.78e-14 | 72 |
presumptive paraxial mesoderm | 1.78e-14 | 72 |
muscle tissue | 4.43e-14 | 64 |
musculature | 4.43e-14 | 64 |
musculature of body | 4.43e-14 | 64 |
skeletal muscle tissue | 5.39e-14 | 62 |
striated muscle tissue | 5.39e-14 | 62 |
myotome | 5.39e-14 | 62 |
epithelial vesicle | 1.65e-12 | 78 |
multilaminar epithelium | 5.90e-11 | 83 |
connective tissue | 5.35e-10 | 371 |
integument | 2.30e-09 | 46 |
integumental system | 2.30e-09 | 46 |
mesoderm | 4.06e-08 | 315 |
mesoderm-derived structure | 4.06e-08 | 315 |
presumptive mesoderm | 4.06e-08 | 315 |
skin of body | 4.07e-08 | 41 |
trunk mesenchyme | 6.27e-08 | 122 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.73e-09 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.