FFCP PHASE1:Hg19::chr11:65193524..65193532,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=283131|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=30815|TSSclassifier=N|UniProt=|association_with_transcript=0bp_to_AF080092,AF508303_5end|coexpression_cluster_id=C743|description=CAGE_peak_2_at_NEAT1_5end|id=chr11:65193524..65193532,+|ontology_enrichment_celltype=CL:0002057!2.29e-25!42;CL:0000860!5.65e-23!45;CL:0002009!1.21e-18!65;CL:0002194!1.22e-17!63;CL:0000576!1.22e-17!63;CL:0000040!1.22e-17!63;CL:0000559!1.22e-17!63;CL:0000557!4.35e-16!71;CL:0000766!7.86e-16!76;CL:0000839!9.82e-16!70;CL:0000763!6.28e-11!112;CL:0000049!6.28e-11!112;CL:0002031!2.07e-10!124;CL:0000738!5.05e-10!140;CL:0002087!6.39e-10!119;CL:0002032!8.48e-08!165;CL:0000837!8.48e-08!165;CL:0000037!5.99e-07!172;CL:0000566!5.99e-07!172|ontology_enrichment_celltype_v019=CL:0000860;5.33e-26;33!CL:0002057;5.33e-26;33!CL:0000576;1.29e-18;48!CL:0000473;3.12e-18;39!CL:0000234;3.12e-18;39!CL:0000766;7.58e-12;69|ontology_enrichment_celltype_v019_2=CL:0000860,5.70e-34,42;CL:0002057,5.70e-34,42;CL:0000473,4.93e-30,48;CL:0000234,4.93e-30,48;CL:0002009,4.05e-25,61;CL:0002194,9.87e-24,59;CL:0000576,9.87e-24,59;CL:0000040,9.87e-24,59;CL:0000559,9.87e-24,59;CL:0000557,5.64e-21,67;CL:0000766,3.56e-20,72;CL:0000839,4.34e-19,66;CL:0000763,2.44e-13,108;CL:0000049,2.44e-13,108;CL:0000738,9.65e-11,136;CL:0002031,2.35e-10,120;CL:0002087,2.79e-10,115;CL:0000134,3.19e-08,354;CL:0002032,7.38e-08,161;CL:0000837,7.38e-08,161;CL:0002320,2.17e-07,361;CL:0002393,3.79e-07,9;CL:0002397,3.79e-07,9;CL:0000037,5.00e-07,168|ontology_enrichment_development_v019=CL:0002057;2.44e-24;42|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002371!5.34e-16!80;UBERON:0002390!1.06e-15!102;UBERON:0003061!1.06e-15!102;UBERON:0001474!2.29e-14!86;UBERON:0002193!6.97e-14!112;UBERON:0004765!1.50e-11!101;UBERON:0001434!1.50e-11!101;UBERON:0002405!1.26e-09!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.50e-21,76;UBERON:0002390,8.01e-21,98;UBERON:0003061,8.01e-21,98;UBERON:0001474,3.58e-19,82;UBERON:0002193,1.29e-18,108;UBERON:0002405,2.17e-17,93;UBERON:0004765,1.50e-15,90;UBERON:0001434,3.75e-14,100;UBERON:0002204,4.15e-07,167;UBERON:0002384,7.26e-07,371|phase1_expression=11.9907730318567,4.71021152560163,2.11431606143957,3.00219895059391,2.68176656656373,2.61701557230111,0,0,0.261185628199839,0.491467873003018,0.697801167972428,0.218441372130172,0.263766978228454,0.123766352960047,0,0,0,0,0,0.123121058076788,0,0,0,0.273748850145768,0,0.0764134057479513,0,0,0,0.767658796194425,0.464448369948228,0,0,0,0.154934401160603,1.42169232487422,1.46800219667424,1.66198622559563,2.60707781711184,3.68918480216948,1.34349284543955,1.6194683300949,0.77272670290256,4.36194716338694,6.04601509902095,11.6440349370152,7.20530014407622,17.6802191849385,33.1385816857761,5.46615545412086,24.8475885333228,14.8983804829809,9.3081333798887,16.1371170895957,35.2108865145289,5.27078550719293,12.8265890527188,16.1800908800461,11.3251040177234,20.53945773287,46.67161018333,1.64925650093358,15.7576289521089,21.7374622771674,8.9964863974861,9.07816359505824,33.0095791967655,16.3311632416883,50.5838430867595,19.1126183340503,12.1079900526674,13.6262725315399,21.2029799585393,4.43636101255078,6.80333759888139,4.61249020118427,3.48218756554135,5.55654503513573,3.85741408072992,10.5454715184262,8.95125047395906,7.30656615058536,1.75996244461323,0,0,0.853460445133014,0.400395987036012,1.14950487990897,0,0,0.569212969109448,1.76171156811282,0.764546456250458,2.64342657158052,0.560508562981536,0.790152254325231,0.196709770113833,0.786021525498329,0.411202997999018,5.85152733867373,0.977766799900771,0.946895611469467,5.84480185223734,6.68462741311041,7.9543595018206,7.08908462667588,7.04090045789041,15.2428670473553,15.997299749865,8.38633313478748,5.25065033793112,8.69409257205158,1.33457906845854,8.02622484269139,2.09071047609954,5.09892042139048,3.83220493601921,1.71813722741315,2.27717722817553,0.637130828648193,2.60433381542567,2.85135613334512,0.301150238155546,0.639933055772092,1.24930726552346,0.710331756132051,0.821127996921047,0.201606743224732,1.33720097891754,0.144824403882799,2.43806866313962,0,0,0.361439152384566,0,2.60723734129483,0.795285947051099,0.973269740605272,0.189069634328136,1.33037638477538,1.31752178539689,0.392937226493138,0,0,2.27183175558278,0.522389211897802,0.797747763113191,0.238490624305342,0,0,0.198762407366705,0,0,0,0,0.550236083880135,0,1.8089173141853,1.77883131343355,1.33888245105868,0,0,1.22031028774085,0,0,0.357198913136319,0.22452937262617,0.225222960966644,0,0,0.183201743930407,6.58902087180316,0,0.436094052142534,0.496971951695318,0.379891534993739,20.6558322068621,4.58938593198102,1.06400514659507,0.560677600142307,0,0.49333509683432,0.311211035399766,0.404132016209064,0.490385709340376,0,0,0,0.312160076830321,0.570471821544449,0.747243402759005,0.469737994575059,0,0,0.816616685019573,0.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=283131 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=30815 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=0bp_to_AF080092,AF508303_5end | |||
|coexpression_cluster_id=C743 | |||
|description=CAGE_peak_2_at_NEAT1_5end | |||
|id=chr11:65193524..65193532,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.29e-25!42;CL:0000860!5.65e-23!45;CL:0002009!1.21e-18!65;CL:0002194!1.22e-17!63;CL:0000576!1.22e-17!63;CL:0000040!1.22e-17!63;CL:0000559!1.22e-17!63;CL:0000557!4.35e-16!71;CL:0000766!7.86e-16!76;CL:0000839!9.82e-16!70;CL:0000763!6.28e-11!112;CL:0000049!6.28e-11!112;CL:0002031!2.07e-10!124;CL:0000738!5.05e-10!140;CL:0002087!6.39e-10!119;CL:0002032!8.48e-08!165;CL:0000837!8.48e-08!165;CL:0000037!5.99e-07!172;CL:0000566!5.99e-07!172 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.33e-26;33!CL:0002057;5.33e-26;33!CL:0000576;1.29e-18;48!CL:0000473;3.12e-18;39!CL:0000234;3.12e-18;39!CL:0000766;7.58e-12;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.70e-34,42;CL:0002057,5.70e-34,42;CL:0000473,4.93e-30,48;CL:0000234,4.93e-30,48;CL:0002009,4.05e-25,61;CL:0002194,9.87e-24,59;CL:0000576,9.87e-24,59;CL:0000040,9.87e-24,59;CL:0000559,9.87e-24,59;CL:0000557,5.64e-21,67;CL:0000766,3.56e-20,72;CL:0000839,4.34e-19,66;CL:0000763,2.44e-13,108;CL:0000049,2.44e-13,108;CL:0000738,9.65e-11,136;CL:0002031,2.35e-10,120;CL:0002087,2.79e-10,115;CL:0000134,3.19e-08,354;CL:0002032,7.38e-08,161;CL:0000837,7.38e-08,161;CL:0002320,2.17e-07,361;CL:0002393,3.79e-07,9;CL:0002397,3.79e-07,9;CL:0000037,5.00e-07,168 | |||
|ontology_enrichment_development_v019=CL:0002057;2.44e-24;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!5.34e-16!80;UBERON:0002390!1.06e-15!102;UBERON:0003061!1.06e-15!102;UBERON:0001474!2.29e-14!86;UBERON:0002193!6.97e-14!112;UBERON:0004765!1.50e-11!101;UBERON:0001434!1.50e-11!101;UBERON:0002405!1.26e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.50e-21,76;UBERON:0002390,8.01e-21,98;UBERON:0003061,8.01e-21,98;UBERON:0001474,3.58e-19,82;UBERON:0002193,1.29e-18,108;UBERON:0002405,2.17e-17,93;UBERON:0004765,1.50e-15,90;UBERON:0001434,3.75e-14,100;UBERON:0002204,4.15e-07,167;UBERON:0002384,7.26e-07,371 | |||
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| |||
|short_description=p2@NEAT1 | |||
}} |
Revision as of 18:55, 10 September 2013
Short description: | p2@NEAT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_NEAT1_5end |
Coexpression cluster: | C743_CD14_anaplastic_skeletal_submaxillary_Fibroblast_peripheral_Preadipocyte |
Association with transcript: | 0bp_to_AF080092, AF508303_5end |
EntrezGene: | NEAT1 |
HGNC: | 30815 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.70e-34 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.70e-34 | 42 |
defensive cell | 4.93e-30 | 48 |
phagocyte | 4.93e-30 | 48 |
macrophage dendritic cell progenitor | 4.05e-25 | 61 |
monopoietic cell | 9.87e-24 | 59 |
monocyte | 9.87e-24 | 59 |
monoblast | 9.87e-24 | 59 |
promonocyte | 9.87e-24 | 59 |
granulocyte monocyte progenitor cell | 5.64e-21 | 67 |
myeloid leukocyte | 3.56e-20 | 72 |
myeloid lineage restricted progenitor cell | 4.34e-19 | 66 |
myeloid cell | 2.44e-13 | 108 |
common myeloid progenitor | 2.44e-13 | 108 |
leukocyte | 9.65e-11 | 136 |
hematopoietic lineage restricted progenitor cell | 2.35e-10 | 120 |
nongranular leukocyte | 2.79e-10 | 115 |
mesenchymal cell | 3.19e-08 | 354 |
hematopoietic oligopotent progenitor cell | 7.38e-08 | 161 |
hematopoietic multipotent progenitor cell | 7.38e-08 | 161 |
connective tissue cell | 2.17e-07 | 361 |
intermediate monocyte | 3.79e-07 | 9 |
CD14-positive, CD16-positive monocyte | 3.79e-07 | 9 |
hematopoietic stem cell | 5.00e-07 | 168 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.50e-21 | 76 |
hematopoietic system | 8.01e-21 | 98 |
blood island | 8.01e-21 | 98 |
bone element | 3.58e-19 | 82 |
hemolymphoid system | 1.29e-18 | 108 |
immune system | 2.17e-17 | 93 |
skeletal element | 1.50e-15 | 90 |
skeletal system | 3.75e-14 | 100 |
musculoskeletal system | 4.15e-07 | 167 |
connective tissue | 7.26e-07 | 371 |
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