FFCP PHASE1:Hg19::chr12:49579761..49579773,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7846|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=20766|TSSclassifier=N|UniProt=Q9UQM3|association_with_transcript=0bp_to_AF141348_5end|coexpression_cluster_id=C10|description=CAGE_peak_6_at_TUBA1A_5end|id=chr12:49579761..49579773,-|ontology_enrichment_celltype=CL:0000055!2.14e-13!180;CL:0000393!2.35e-10!60;CL:0000211!2.35e-10!60;CL:0000183!7.84e-09!59;CL:0000680!1.42e-08!57;CL:0000056!1.42e-08!57;CL:0000355!1.42e-08!57;CL:0000187!2.02e-08!54;CL:0000192!2.66e-08!42;CL:0000514!2.66e-08!42|ontology_enrichment_celltype_v019=CL:0000192;9.00e-07;43|ontology_enrichment_celltype_v019_2=CL:0000393,8.10e-12,61;CL:0000211,8.10e-12,61;CL:0000187,1.88e-09,55;CL:0000680,2.93e-09,58;CL:0000056,2.93e-09,58;CL:0000355,2.93e-09,58;CL:0000192,2.27e-08,43;CL:0000514,2.27e-08,43|ontology_enrichment_development_v019=CL:0000514;9.00e-07;43|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.46e-14!82;UBERON:0005743!2.57e-13!86;UBERON:0000073!4.34e-12!94;UBERON:0001016!4.34e-12!94;UBERON:0000914!1.06e-11!83;UBERON:0002329!1.06e-11!83;UBERON:0003077!1.06e-11!83;UBERON:0003059!1.06e-11!83;UBERON:0007282!1.06e-11!83;UBERON:0009618!1.06e-11!83;UBERON:0007285!1.06e-11!83;UBERON:0000955!3.96e-10!69;UBERON:0006238!3.96e-10!69;UBERON:0001049!4.59e-10!57;UBERON:0005068!4.59e-10!57;UBERON:0006241!4.59e-10!57;UBERON:0007135!4.59e-10!57;UBERON:0004290!2.64e-09!70;UBERON:0002616!2.95e-09!59;UBERON:0000119!4.69e-09!312;UBERON:0000483!9.51e-09!309;UBERON:0000025!3.69e-08!194;UBERON:0000475!4.77e-08!365;UBERON:0001134!1.04e-07!61;UBERON:0002036!1.04e-07!61;UBERON:0003082!1.04e-07!61;UBERON:0002346!2.14e-07!90;UBERON:0002020!2.66e-07!34;UBERON:0003528!2.66e-07!34;UBERON:0003075!2.91e-07!86;UBERON:0007284!2.91e-07!86;UBERON:0002385!3.08e-07!63;UBERON:0001015!3.08e-07!63;UBERON:0000383!3.08e-07!63;UBERON:0005256!3.33e-07!143;UBERON:0000924!4.21e-07!173;UBERON:0006601!4.21e-07!173;UBERON:0004121!6.27e-07!169;UBERON:0000486!8.35e-07!82;UBERON:0000468!8.71e-07!659;UBERON:0002049!8.96e-07!79;UBERON:0007798!8.96e-07!79;UBERON:0000033!9.92e-07!123|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.32e-12,78;UBERON:0007524,4.90e-12,73;UBERON:0003077,2.25e-11,72;UBERON:0007285,2.25e-11,72;UBERON:0002329,1.10e-10,71;UBERON:0003059,1.10e-10,71;UBERON:0007282,1.10e-10,71;UBERON:0004290,1.10e-10,71;UBERON:0009618,1.10e-10,71;UBERON:0000119,5.29e-10,309;UBERON:0000483,8.14e-10,306;UBERON:0001134,4.05e-09,62;UBERON:0002036,4.05e-09,62;UBERON:0003082,4.05e-09,62;UBERON:0002385,1.40e-08,64;UBERON:0001015,1.40e-08,64;UBERON:0000383,1.40e-08,64;UBERON:0005256,2.49e-08,122;UBERON:0000486,8.67e-08,83;UBERON:0000025,4.45e-07,192;UBERON:0001017,5.57e-07,81|phase1_expression=0.54503513781167,1.2846031433459,0.140954404095971,0,0.446961094427288,2.61701557230111,0,0,0,1.22866968250754,4.18680700783456,0,1.05506791291381,0.618831764800233,0.994192127183747,2.01697543935533,5.42425075221579,3.65155045193687,1.46379839637152,1.47745269692145,2.65200898617529,1.88072832886853,2.0036519099174,3.55873505189499,2.76193807108566,0.0764134057479513,0,0,0.393364276848904,0,0.619264493264304,0,0.6024118375565,0,0.232401601740905,0,0.293600439334847,0,0,0.434021741431704,0.895661896959697,0,0,0.290796477559129,0,0.242584061187816,0,0.411167888021826,0,0,0.512321413058201,0.47296445977717,0,0.645484683583826,0,0,0.545812300115692,0,0,0,0,0.329851300186716,0.398927315243264,0.426224750532694,0,0,0,0.502497330513487,1.5644487552606,0.217188844705117,0,0,0.316462387440884,0.211255286311942,0.425208599930087,0.209658645508376,0.22465726229299,0.150176892841506,0,0,0.99458338599545,0.182664153764634,0,0,0,0,0,0,0,0,1.1384259382189,0,0,0,0.560508562981536,0,0,0.393010762749165,0,0.167186495390678,0.651844533267181,0,1.94826728407911,0,0.294605907474837,0,0,0,0,0,0,0.289803085735052,0.296573126324121,0.267540828089713,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0.236777252044017,0,0.403213486449465,0,0.289648807765598,0,1.34140171940727,0.12786256184353,0.361439152384566,0.50133791063589,0.869079113764942,0,0,0.567208902984407,3.32594096193846,1.40535657109002,0.458426764241994,0,0,0,0.174129737299267,1.59549552622638,0,0,0,0,0,1.38856200643038,0,0.838998872419812,1.10047216776027,1.46296476575767,0.258416759169329,0,0.33472061276467,1.20848795132744,1.52054421143703,4.14905497831888,0,4.86085168729056,0.0892997282840798,0.673588117878509,0.112611480483322,0,0,1.09921046358244,0,0,0,0.496971951695318,1.2663051166458,0.132409180813219,1.14734648299525,1.06400514659507,2.80338800071154,0,2.96001058100592,0,0.942974704487816,1.9615428373615,0.454072282934794,0,0,0.624320153660641,0.570471821544449,1.19558944441441,1.17434498643765,0.485618833104395,1.54495887372473,0,0.982674538494144,0.103325781175765,1.18800285728205,0.741800787835671,0.910161361938026,0,0.336672227908132,1.376303718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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7846 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=20766 | |||
|TSSclassifier=N | |||
|UniProt=Q9UQM3 | |||
|association_with_transcript=0bp_to_AF141348_5end | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_6_at_TUBA1A_5end | |||
|id=chr12:49579761..49579773,- | |||
|ontology_enrichment_celltype=CL:0000055!2.14e-13!180;CL:0000393!2.35e-10!60;CL:0000211!2.35e-10!60;CL:0000183!7.84e-09!59;CL:0000680!1.42e-08!57;CL:0000056!1.42e-08!57;CL:0000355!1.42e-08!57;CL:0000187!2.02e-08!54;CL:0000192!2.66e-08!42;CL:0000514!2.66e-08!42 | |||
|ontology_enrichment_celltype_v019=CL:0000192;9.00e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,8.10e-12,61;CL:0000211,8.10e-12,61;CL:0000187,1.88e-09,55;CL:0000680,2.93e-09,58;CL:0000056,2.93e-09,58;CL:0000355,2.93e-09,58;CL:0000192,2.27e-08,43;CL:0000514,2.27e-08,43 | |||
|ontology_enrichment_development_v019=CL:0000514;9.00e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.46e-14!82;UBERON:0005743!2.57e-13!86;UBERON:0000073!4.34e-12!94;UBERON:0001016!4.34e-12!94;UBERON:0000914!1.06e-11!83;UBERON:0002329!1.06e-11!83;UBERON:0003077!1.06e-11!83;UBERON:0003059!1.06e-11!83;UBERON:0007282!1.06e-11!83;UBERON:0009618!1.06e-11!83;UBERON:0007285!1.06e-11!83;UBERON:0000955!3.96e-10!69;UBERON:0006238!3.96e-10!69;UBERON:0001049!4.59e-10!57;UBERON:0005068!4.59e-10!57;UBERON:0006241!4.59e-10!57;UBERON:0007135!4.59e-10!57;UBERON:0004290!2.64e-09!70;UBERON:0002616!2.95e-09!59;UBERON:0000119!4.69e-09!312;UBERON:0000483!9.51e-09!309;UBERON:0000025!3.69e-08!194;UBERON:0000475!4.77e-08!365;UBERON:0001134!1.04e-07!61;UBERON:0002036!1.04e-07!61;UBERON:0003082!1.04e-07!61;UBERON:0002346!2.14e-07!90;UBERON:0002020!2.66e-07!34;UBERON:0003528!2.66e-07!34;UBERON:0003075!2.91e-07!86;UBERON:0007284!2.91e-07!86;UBERON:0002385!3.08e-07!63;UBERON:0001015!3.08e-07!63;UBERON:0000383!3.08e-07!63;UBERON:0005256!3.33e-07!143;UBERON:0000924!4.21e-07!173;UBERON:0006601!4.21e-07!173;UBERON:0004121!6.27e-07!169;UBERON:0000486!8.35e-07!82;UBERON:0000468!8.71e-07!659;UBERON:0002049!8.96e-07!79;UBERON:0007798!8.96e-07!79;UBERON:0000033!9.92e-07!123 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.32e-12,78;UBERON:0007524,4.90e-12,73;UBERON:0003077,2.25e-11,72;UBERON:0007285,2.25e-11,72;UBERON:0002329,1.10e-10,71;UBERON:0003059,1.10e-10,71;UBERON:0007282,1.10e-10,71;UBERON:0004290,1.10e-10,71;UBERON:0009618,1.10e-10,71;UBERON:0000119,5.29e-10,309;UBERON:0000483,8.14e-10,306;UBERON:0001134,4.05e-09,62;UBERON:0002036,4.05e-09,62;UBERON:0003082,4.05e-09,62;UBERON:0002385,1.40e-08,64;UBERON:0001015,1.40e-08,64;UBERON:0000383,1.40e-08,64;UBERON:0005256,2.49e-08,122;UBERON:0000486,8.67e-08,83;UBERON:0000025,4.45e-07,192;UBERON:0001017,5.57e-07,81 | |||
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| |||
|short_description=p6@TUBA1A | |||
}} |
Revision as of 22:53, 10 September 2013
Short description: | p6@TUBA1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_TUBA1A_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 0bp_to_AF141348_5end |
EntrezGene: | TUBA1A |
HGNC: | 20766 |
UniProt: | Q9UQM3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 8.10e-12 | 61 |
electrically active cell | 8.10e-12 | 61 |
muscle cell | 1.88e-09 | 55 |
muscle precursor cell | 2.93e-09 | 58 |
myoblast | 2.93e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.93e-09 | 58 |
smooth muscle cell | 2.27e-08 | 43 |
smooth muscle myoblast | 2.27e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 2.32e-12 | 78 |
dense mesenchyme tissue | 4.90e-12 | 73 |
paraxial mesoderm | 2.25e-11 | 72 |
presumptive paraxial mesoderm | 2.25e-11 | 72 |
somite | 1.10e-10 | 71 |
presomitic mesoderm | 1.10e-10 | 71 |
presumptive segmental plate | 1.10e-10 | 71 |
dermomyotome | 1.10e-10 | 71 |
trunk paraxial mesoderm | 1.10e-10 | 71 |
cell layer | 5.29e-10 | 309 |
epithelium | 8.14e-10 | 306 |
skeletal muscle tissue | 4.05e-09 | 62 |
striated muscle tissue | 4.05e-09 | 62 |
myotome | 4.05e-09 | 62 |
muscle tissue | 1.40e-08 | 64 |
musculature | 1.40e-08 | 64 |
musculature of body | 1.40e-08 | 64 |
trunk mesenchyme | 2.49e-08 | 122 |
multilaminar epithelium | 8.67e-08 | 83 |
tube | 4.45e-07 | 192 |
central nervous system | 5.57e-07 | 81 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.