FFCP PHASE1:Hg19::chr16:57653596..57653610,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9289|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4512|TSSclassifier=S|UniProt=|association_with_transcript=-39bp_to_uc002elz.1,uc002ema.1_5end|coexpression_cluster_id=C2379|description=CAGE_peak_10_at_GPR56_5end|id=chr16:57653596..57653610,+|ontology_enrichment_celltype=CL:0000066!8.21e-36!254;CL:0002076!1.66e-27!43;CL:0000223!2.07e-22!59;CL:0002251!2.30e-12!21;CL:0002368!5.17e-11!13;CL:0002159!3.14e-10!13|ontology_enrichment_celltype_v019=CL:0002076;4.24e-26;42!CL:0002368;3.33e-13;13!CL:0002251;4.26e-13;20!CL:0000244;1.46e-10;4!CL:0000731;1.46e-10;4!CL:0000082;6.15e-09;19!CL:0002231;4.53e-08;3|ontology_enrichment_celltype_v019_2=CL:0002076,1.67e-32,42;CL:0000066,1.99e-27,253;CL:0000223,1.19e-25,58;CL:0002251,3.15e-13,20;CL:0002368,4.07e-13,13;CL:0000244,1.92e-10,4;CL:0000731,1.92e-10,4;CL:0000082,5.25e-09,19;CL:0002231,4.33e-08,3|ontology_enrichment_development_v019=CL:0000223;8.41e-14;58|ontology_enrichment_disease=DOID:305!2.66e-23!106;DOID:0050687!6.17e-18!143;DOID:1749!2.67e-15!14;DOID:299!3.75e-10!25;DOID:162!2.19e-07!235;DOID:14566!6.48e-07!239|ontology_enrichment_disease_v019=DOID:1749;2.38e-16;14!DOID:3119;6.72e-10;14!DOID:299;1.42e-09;25!DOID:0050615;5.76e-09;16!DOID:305;2.05e-07;106!DOID:1324;2.65e-07;15|ontology_enrichment_disease_v019_2=DOID:305,7.82e-21,106;DOID:0050687,4.11e-17,143;DOID:1749,2.08e-16,14;DOID:3119,7.11e-10,14;DOID:162,1.33e-09,235;DOID:299,1.46e-09,25;DOID:14566,3.54e-09,239;DOID:0050615,6.22e-09,16;DOID:1324,2.86e-07,15|ontology_enrichment_uberon=UBERON:0004119!1.82e-21!169;UBERON:0000925!1.82e-21!169;UBERON:0006595!1.82e-21!169;UBERON:0001007!4.53e-15!155;UBERON:0001555!4.53e-15!155;UBERON:0007026!4.53e-15!155;UBERON:0006554!7.42e-15!44;UBERON:0001008!2.43e-14!45;UBERON:0005911!2.41e-12!82;UBERON:0000464!5.18e-12!104;UBERON:0004921!4.34e-11!129;UBERON:0004185!4.34e-11!129;UBERON:0001004!4.71e-11!72;UBERON:0000466!5.20e-11!126;UBERON:0000077!6.60e-11!130;UBERON:0000344!1.34e-10!12;UBERON:0005177!1.22e-09!107;UBERON:0005153!1.80e-09!37;UBERON:0000058!3.71e-09!26;UBERON:0000161!9.33e-09!35;UBERON:0000489!1.19e-08!32;UBERON:0002113!1.95e-08!27;UBERON:0003918!1.95e-08!27;UBERON:0005095!1.95e-08!27;UBERON:0007687!1.95e-08!27;UBERON:0004175!3.14e-08!25;UBERON:0000365!5.41e-08!5;UBERON:0005156!6.55e-08!59;UBERON:0000990!6.55e-08!59;UBERON:0009569!1.38e-07!113;UBERON:0003729!1.52e-07!5;UBERON:0003100!1.57e-07!41;UBERON:0005178!2.72e-07!34;UBERON:0002224!2.72e-07!34;UBERON:0000065!3.41e-07!53;UBERON:0005795!4.64e-07!22;UBERON:0005157!5.65e-07!51;UBERON:0005181!5.88e-07!35;UBERON:0003064!7.05e-07!37|ontology_enrichment_uberon_v019=UBERON:0005911;7.58e-14;36!UBERON:0000365;1.08e-12;5!UBERON:0005910;1.66e-10;6!UBERON:0004807;3.71e-09;22!UBERON:0004802;6.15e-09;19!UBERON:0000115;6.15e-09;19!UBERON:0000344;1.51e-08;20!UBERON:0006554;7.15e-08;30!UBERON:0001008;7.15e-08;30!UBERON:0002048;1.77e-07;22!UBERON:0000117;1.77e-07;22!UBERON:0000171;1.77e-07;22!UBERON:0000170;1.77e-07;22!UBERON:0000974;4.38e-07;6!UBERON:0000486;7.20e-07;12!UBERON:0005178;8.21e-07;34!UBERON:0002224;8.21e-07;34|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.21e-14,160;UBERON:0000925,1.21e-14,160;UBERON:0006595,1.21e-14,160;UBERON:0000365,1.06e-12,5;UBERON:0005911,3.43e-12,82;UBERON:0005910,1.64e-10,6;UBERON:0006554,1.57e-09,47;UBERON:0001008,2.99e-09,48;UBERON:0004802,5.25e-09,19;UBERON:0000115,5.25e-09,19;UBERON:0001007,9.15e-09,145;UBERON:0001555,9.15e-09,145;UBERON:0007026,9.15e-09,145;UBERON:0000344,1.10e-08,20;UBERON:0005153,3.02e-08,37;UBERON:0001004,4.36e-08,74;UBERON:0005178,1.17e-07,34;UBERON:0002224,1.17e-07,34;UBERON:0002048,1.55e-07,22;UBERON:0000117,1.55e-07,22;UBERON:0000171,1.55e-07,22;UBERON:0000170,1.55e-07,22;UBERON:0005597,1.55e-07,22;UBERON:0000118,1.55e-07,22;UBERON:0000065,1.81e-07,54;UBERON:0005181,2.29e-07,35;UBERON:0005157,6.21e-07,47;UBERON:0005177,7.38e-07,101;UBERON:0004807,7.48e-07,28;UBERON:0003343,9.38e-07,4;UBERON:0004785,9.38e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75826367343678,0.30120591877825,1.84877005083394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37528029272598,2.18577172975525,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.48875241714027,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93260853163297,0.818238361772504,0.860413786167011,0,0,0,0.10366105501537,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.7057456479485,0,0.878002283269004,2.24803506515239,0.904760751704678,1.11106134190236,0,0,0,0,0,0,0,0,0.790204397959275,0,0,0,0,0.93733833986777,0.839910640994298,1.13420077793909,0.806026704325635,0.581267877027924,1.53353071666084,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9289 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4512 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-39bp_to_uc002elz.1,uc002ema.1_5end | |||
|coexpression_cluster_id=C2379 | |||
|description=CAGE_peak_10_at_GPR56_5end | |||
|id=chr16:57653596..57653610,+ | |||
|ontology_enrichment_celltype=CL:0000066!8.21e-36!254;CL:0002076!1.66e-27!43;CL:0000223!2.07e-22!59;CL:0002251!2.30e-12!21;CL:0002368!5.17e-11!13;CL:0002159!3.14e-10!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.24e-26;42!CL:0002368;3.33e-13;13!CL:0002251;4.26e-13;20!CL:0000244;1.46e-10;4!CL:0000731;1.46e-10;4!CL:0000082;6.15e-09;19!CL:0002231;4.53e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.67e-32,42;CL:0000066,1.99e-27,253;CL:0000223,1.19e-25,58;CL:0002251,3.15e-13,20;CL:0002368,4.07e-13,13;CL:0000244,1.92e-10,4;CL:0000731,1.92e-10,4;CL:0000082,5.25e-09,19;CL:0002231,4.33e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000223;8.41e-14;58 | |||
|ontology_enrichment_disease=DOID:305!2.66e-23!106;DOID:0050687!6.17e-18!143;DOID:1749!2.67e-15!14;DOID:299!3.75e-10!25;DOID:162!2.19e-07!235;DOID:14566!6.48e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.38e-16;14!DOID:3119;6.72e-10;14!DOID:299;1.42e-09;25!DOID:0050615;5.76e-09;16!DOID:305;2.05e-07;106!DOID:1324;2.65e-07;15 | |||
|ontology_enrichment_disease_v019_2=DOID:305,7.82e-21,106;DOID:0050687,4.11e-17,143;DOID:1749,2.08e-16,14;DOID:3119,7.11e-10,14;DOID:162,1.33e-09,235;DOID:299,1.46e-09,25;DOID:14566,3.54e-09,239;DOID:0050615,6.22e-09,16;DOID:1324,2.86e-07,15 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.82e-21!169;UBERON:0000925!1.82e-21!169;UBERON:0006595!1.82e-21!169;UBERON:0001007!4.53e-15!155;UBERON:0001555!4.53e-15!155;UBERON:0007026!4.53e-15!155;UBERON:0006554!7.42e-15!44;UBERON:0001008!2.43e-14!45;UBERON:0005911!2.41e-12!82;UBERON:0000464!5.18e-12!104;UBERON:0004921!4.34e-11!129;UBERON:0004185!4.34e-11!129;UBERON:0001004!4.71e-11!72;UBERON:0000466!5.20e-11!126;UBERON:0000077!6.60e-11!130;UBERON:0000344!1.34e-10!12;UBERON:0005177!1.22e-09!107;UBERON:0005153!1.80e-09!37;UBERON:0000058!3.71e-09!26;UBERON:0000161!9.33e-09!35;UBERON:0000489!1.19e-08!32;UBERON:0002113!1.95e-08!27;UBERON:0003918!1.95e-08!27;UBERON:0005095!1.95e-08!27;UBERON:0007687!1.95e-08!27;UBERON:0004175!3.14e-08!25;UBERON:0000365!5.41e-08!5;UBERON:0005156!6.55e-08!59;UBERON:0000990!6.55e-08!59;UBERON:0009569!1.38e-07!113;UBERON:0003729!1.52e-07!5;UBERON:0003100!1.57e-07!41;UBERON:0005178!2.72e-07!34;UBERON:0002224!2.72e-07!34;UBERON:0000065!3.41e-07!53;UBERON:0005795!4.64e-07!22;UBERON:0005157!5.65e-07!51;UBERON:0005181!5.88e-07!35;UBERON:0003064!7.05e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0005911;7.58e-14;36!UBERON:0000365;1.08e-12;5!UBERON:0005910;1.66e-10;6!UBERON:0004807;3.71e-09;22!UBERON:0004802;6.15e-09;19!UBERON:0000115;6.15e-09;19!UBERON:0000344;1.51e-08;20!UBERON:0006554;7.15e-08;30!UBERON:0001008;7.15e-08;30!UBERON:0002048;1.77e-07;22!UBERON:0000117;1.77e-07;22!UBERON:0000171;1.77e-07;22!UBERON:0000170;1.77e-07;22!UBERON:0000974;4.38e-07;6!UBERON:0000486;7.20e-07;12!UBERON:0005178;8.21e-07;34!UBERON:0002224;8.21e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.21e-14,160;UBERON:0000925,1.21e-14,160;UBERON:0006595,1.21e-14,160;UBERON:0000365,1.06e-12,5;UBERON:0005911,3.43e-12,82;UBERON:0005910,1.64e-10,6;UBERON:0006554,1.57e-09,47;UBERON:0001008,2.99e-09,48;UBERON:0004802,5.25e-09,19;UBERON:0000115,5.25e-09,19;UBERON:0001007,9.15e-09,145;UBERON:0001555,9.15e-09,145;UBERON:0007026,9.15e-09,145;UBERON:0000344,1.10e-08,20;UBERON:0005153,3.02e-08,37;UBERON:0001004,4.36e-08,74;UBERON:0005178,1.17e-07,34;UBERON:0002224,1.17e-07,34;UBERON:0002048,1.55e-07,22;UBERON:0000117,1.55e-07,22;UBERON:0000171,1.55e-07,22;UBERON:0000170,1.55e-07,22;UBERON:0005597,1.55e-07,22;UBERON:0000118,1.55e-07,22;UBERON:0000065,1.81e-07,54;UBERON:0005181,2.29e-07,35;UBERON:0005157,6.21e-07,47;UBERON:0005177,7.38e-07,101;UBERON:0004807,7.48e-07,28;UBERON:0003343,9.38e-07,4;UBERON:0004785,9.38e-07,4 | |||
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|short_description=p10@GPR56 | |||
}} |
Revision as of 10:54, 11 September 2013
Short description: | p10@GPR56 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_GPR56_5end |
Coexpression cluster: | C2379_smallcell_maxillary_malignant_kidney_pancreatic_signet_bronchioalveolar |
Association with transcript: | -39bp_to_uc002elz.1, uc002ema.1_5end |
EntrezGene: | GPR56 |
HGNC: | 4512 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.67e-32 | 42 |
epithelial cell | 1.99e-27 | 253 |
endodermal cell | 1.19e-25 | 58 |
epithelial cell of alimentary canal | 3.15e-13 | 20 |
respiratory epithelial cell | 4.07e-13 | 13 |
transitional epithelial cell | 1.92e-10 | 4 |
urothelial cell | 1.92e-10 | 4 |
epithelial cell of lung | 5.25e-09 | 19 |
epithelial cell of prostate | 4.33e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.21e-14 | 160 |
endoderm | 1.21e-14 | 160 |
presumptive endoderm | 1.21e-14 | 160 |
urothelium | 1.06e-12 | 5 |
endo-epithelium | 3.43e-12 | 82 |
transitional epithelium | 1.64e-10 | 6 |
urinary system structure | 1.57e-09 | 47 |
renal system | 2.99e-09 | 48 |
respiratory tract epithelium | 5.25e-09 | 19 |
lung epithelium | 5.25e-09 | 19 |
digestive system | 9.15e-09 | 145 |
digestive tract | 9.15e-09 | 145 |
primitive gut | 9.15e-09 | 145 |
mucosa | 1.10e-08 | 20 |
epithelial bud | 3.02e-08 | 37 |
respiratory system | 4.36e-08 | 74 |
thoracic cavity element | 1.17e-07 | 34 |
thoracic cavity | 1.17e-07 | 34 |
lung | 1.55e-07 | 22 |
respiratory tube | 1.55e-07 | 22 |
respiration organ | 1.55e-07 | 22 |
pair of lungs | 1.55e-07 | 22 |
lung primordium | 1.55e-07 | 22 |
lung bud | 1.55e-07 | 22 |
respiratory tract | 1.81e-07 | 54 |
thoracic segment organ | 2.29e-07 | 35 |
epithelial fold | 6.21e-07 | 47 |
trunk region element | 7.38e-07 | 101 |
respiratory system epithelium | 7.48e-07 | 28 |
mucosa of oral region | 9.38e-07 | 4 |
respiratory system mucosa | 9.38e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 7.82e-21 | 106 |
cell type cancer | 4.11e-17 | 143 |
squamous cell carcinoma | 2.08e-16 | 14 |
gastrointestinal system cancer | 7.11e-10 | 14 |
cancer | 1.33e-09 | 235 |
adenocarcinoma | 1.46e-09 | 25 |
disease of cellular proliferation | 3.54e-09 | 239 |
respiratory system cancer | 6.22e-09 | 16 |
lung cancer | 2.86e-07 | 15 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.