FFCP PHASE1:Hg19::chr17:41393865..41393870,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr17:41393865..41393870,+|id=chr17:41393865..41393870,+|ontology_enrichment_celltype=CL:0000037!3.11e-22!172;CL:0000566!3.11e-22!172;CL:0002032!2.42e-21!165;CL:0000837!2.42e-21!165;CL:0000988!5.02e-20!182;CL:0002087!1.57e-18!119;CL:0002031!2.56e-18!124;CL:0000738!1.17e-17!140;CL:0000860!1.73e-15!45;CL:0002057!1.93e-15!42;CL:0000763!1.38e-12!112;CL:0000049!1.38e-12!112;CL:0002009!2.23e-10!65;CL:0000557!4.39e-10!71;CL:0000839!6.37e-10!70;CL:0002194!8.21e-10!63;CL:0000576!8.21e-10!63;CL:0000040!8.21e-10!63;CL:0000559!8.21e-10!63;CL:0000542!7.66e-09!53;CL:0000051!7.66e-09!53;CL:0000766!1.25e-08!76;CL:0000838!2.19e-08!52|ontology_enrichment_celltype_v019=CL:0000860;4.52e-18;33!CL:0002057;4.52e-18;33!CL:0000473;2.57e-12;39!CL:0000234;2.57e-12;39!CL:0000576;9.99e-10;48!CL:0002087;2.46e-08;104!CL:0000766;6.11e-07;69|ontology_enrichment_celltype_v019_2=CL:0000037,2.04e-23,168;CL:0002032,1.07e-22,161;CL:0000837,1.07e-22,161;CL:0000988,3.99e-21,177;CL:0002087,6.98e-21,115;CL:0002031,1.98e-20,120;CL:0000738,2.43e-20,136;CL:0000860,4.55e-19,42;CL:0002057,4.55e-19,42;CL:0000473,7.90e-16,48;CL:0000234,7.90e-16,48;CL:0000763,2.81e-13,108;CL:0000049,2.81e-13,108;CL:0002009,1.69e-12,61;CL:0000557,1.95e-12,67;CL:0002194,1.03e-11,59;CL:0000576,1.03e-11,59;CL:0000040,1.03e-11,59;CL:0000559,1.03e-11,59;CL:0000766,2.33e-11,72;CL:0000839,2.70e-11,66;CL:0000542,1.99e-09,53;CL:0000051,1.99e-09,53;CL:0000838,7.69e-09,52|ontology_enrichment_development_v019=CL:0002057;2.05e-14;42|ontology_enrichment_disease=DOID:162!1.00e-48!235;DOID:14566!7.09e-48!239;DOID:0050687!1.08e-35!143;DOID:305!1.69e-27!106;DOID:0050686!2.83e-26!137;DOID:2531!2.72e-13!51;DOID:0060083!2.72e-13!51;DOID:1240!1.93e-08!39;DOID:299!4.05e-08!25;DOID:1749!5.70e-08!14;DOID:7!7.28e-07!39|ontology_enrichment_disease_v019=DOID:1749;1.15e-10;14!DOID:299;5.46e-10;25!DOID:0050687;1.20e-08;143!DOID:0060058;2.58e-08;10!DOID:3119;4.44e-08;14!DOID:14566;6.15e-08;239!DOID:2531;9.23e-08;51!DOID:0060083;9.23e-08;51!DOID:305;9.93e-08;106!DOID:162;1.78e-07;235|ontology_enrichment_disease_v019_2=DOID:162,5.69e-49,235;DOID:14566,1.30e-47,239;DOID:0050687,6.46e-34,143;DOID:0050686,1.35e-28,137;DOID:305,1.38e-25,106;DOID:2531,4.03e-13,51;DOID:0060083,4.03e-13,51;DOID:1749,1.05e-10,14;DOID:299,4.03e-10,25;DOID:0060058,2.52e-08,10;DOID:3119,4.65e-08,14;DOID:7,8.80e-08,39;DOID:1240,4.75e-07,39|ontology_enrichment_uberon=UBERON:0002371!7.24e-10!80;UBERON:0001474!7.92e-10!86;UBERON:0002390!6.37e-08!102;UBERON:0003061!6.37e-08!102;UBERON:0004765!6.56e-07!101;UBERON:0001434!6.56e-07!101|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.34e-11,76;UBERON:0001474,4.15e-11,82;UBERON:0002390,4.30e-09,98;UBERON:0003061,4.30e-09,98;UBERON:0004765,7.11e-09,90;UBERON:0002405,7.21e-09,93;UBERON:0001434,4.49e-07,100;UBERON:0002193,5.58e-07,108|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0,0.672325146451775,0,0,0,0.246242116153576,0,0,0,0.136874425072884,0.125542639594803,0.305653622991805,0.328402357799783,0.787107813136792,2.36018566109342,8.06041736004147,5.41856431606266,2.75826367343678,0.30120591877825,0,16.0357105201224,8.95666164670756,4.69760702935756,31.577738286317,11.8321224007384,14.3227174672462,0.223915474239924,0,0,4.65274364094607,2.64513160582167,4.85168122375632,7.90258725479328,3.28934310417461,10.2203102395384,34.8107794709802,7.94098190240212,22.7022940693042,73.0860843161631,19.3645405075148,23.0225027210381,8.094420600332,2.18324920046277,5.8428105955722,108.3536978993,21.1813157870222,73.5237694668897,8.2462825046679,3.39088217956774,9.37694451171927,29.311133101487,6.24123747160254,21.1759564658495,22.1098825425934,7.82224377630302,8.47036494349955,19.3727840842678,9.20694089968912,22.4688295083028,0.422510572623884,1.70083439972035,1.88692780957538,1.23561494261145,0.150176892841506,0.32145117339416,0.285012743741249,0,0.547992461293902,0,0.546138611262131,0.889509253863555,2.56038133539904,0.400395987036012,0,1.32208974556972,0,1.1384259382189,1.76171156811282,1.14681968437569,0,0.560508562981536,0.526768169550154,5.50787356318733,9.03924754323079,9.86887195197644,0,0.651844533267181,0,0,0.779873198196215,1.17842362989935,0.664601683750863,1.35401931882508,0,0.390178042679635,0,0.276350017785848,0.289803085735052,1.33457906845854,0,0,0.566546713487831,0.383220493601921,0,1.51811815211702,0.318565414324097,0,0,0.301150238155546,0.383959833463255,0,0,0,17.9430001470012,14.9766509638764,8.83428863685074,0,0.670700859703636,0,0,0,0,0,2.91980922181582,0.0945348171640679,0,0.351339142772504,0.130979075497713,0,0,0.324547393654683,0,0.26591592103773,0.476981248610684,0,0.371457501329565,0.198762407366705,0,0.347140501607594,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr17:41393865..41393870,+ | |||
|id=chr17:41393865..41393870,+ | |||
|ontology_enrichment_celltype=CL:0000037!3.11e-22!172;CL:0000566!3.11e-22!172;CL:0002032!2.42e-21!165;CL:0000837!2.42e-21!165;CL:0000988!5.02e-20!182;CL:0002087!1.57e-18!119;CL:0002031!2.56e-18!124;CL:0000738!1.17e-17!140;CL:0000860!1.73e-15!45;CL:0002057!1.93e-15!42;CL:0000763!1.38e-12!112;CL:0000049!1.38e-12!112;CL:0002009!2.23e-10!65;CL:0000557!4.39e-10!71;CL:0000839!6.37e-10!70;CL:0002194!8.21e-10!63;CL:0000576!8.21e-10!63;CL:0000040!8.21e-10!63;CL:0000559!8.21e-10!63;CL:0000542!7.66e-09!53;CL:0000051!7.66e-09!53;CL:0000766!1.25e-08!76;CL:0000838!2.19e-08!52 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.52e-18;33!CL:0002057;4.52e-18;33!CL:0000473;2.57e-12;39!CL:0000234;2.57e-12;39!CL:0000576;9.99e-10;48!CL:0002087;2.46e-08;104!CL:0000766;6.11e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.04e-23,168;CL:0002032,1.07e-22,161;CL:0000837,1.07e-22,161;CL:0000988,3.99e-21,177;CL:0002087,6.98e-21,115;CL:0002031,1.98e-20,120;CL:0000738,2.43e-20,136;CL:0000860,4.55e-19,42;CL:0002057,4.55e-19,42;CL:0000473,7.90e-16,48;CL:0000234,7.90e-16,48;CL:0000763,2.81e-13,108;CL:0000049,2.81e-13,108;CL:0002009,1.69e-12,61;CL:0000557,1.95e-12,67;CL:0002194,1.03e-11,59;CL:0000576,1.03e-11,59;CL:0000040,1.03e-11,59;CL:0000559,1.03e-11,59;CL:0000766,2.33e-11,72;CL:0000839,2.70e-11,66;CL:0000542,1.99e-09,53;CL:0000051,1.99e-09,53;CL:0000838,7.69e-09,52 | |||
|ontology_enrichment_development_v019=CL:0002057;2.05e-14;42 | |||
|ontology_enrichment_disease=DOID:162!1.00e-48!235;DOID:14566!7.09e-48!239;DOID:0050687!1.08e-35!143;DOID:305!1.69e-27!106;DOID:0050686!2.83e-26!137;DOID:2531!2.72e-13!51;DOID:0060083!2.72e-13!51;DOID:1240!1.93e-08!39;DOID:299!4.05e-08!25;DOID:1749!5.70e-08!14;DOID:7!7.28e-07!39 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.15e-10;14!DOID:299;5.46e-10;25!DOID:0050687;1.20e-08;143!DOID:0060058;2.58e-08;10!DOID:3119;4.44e-08;14!DOID:14566;6.15e-08;239!DOID:2531;9.23e-08;51!DOID:0060083;9.23e-08;51!DOID:305;9.93e-08;106!DOID:162;1.78e-07;235 | |||
|ontology_enrichment_disease_v019_2=DOID:162,5.69e-49,235;DOID:14566,1.30e-47,239;DOID:0050687,6.46e-34,143;DOID:0050686,1.35e-28,137;DOID:305,1.38e-25,106;DOID:2531,4.03e-13,51;DOID:0060083,4.03e-13,51;DOID:1749,1.05e-10,14;DOID:299,4.03e-10,25;DOID:0060058,2.52e-08,10;DOID:3119,4.65e-08,14;DOID:7,8.80e-08,39;DOID:1240,4.75e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0002371!7.24e-10!80;UBERON:0001474!7.92e-10!86;UBERON:0002390!6.37e-08!102;UBERON:0003061!6.37e-08!102;UBERON:0004765!6.56e-07!101;UBERON:0001434!6.56e-07!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.34e-11,76;UBERON:0001474,4.15e-11,82;UBERON:0002390,4.30e-09,98;UBERON:0003061,4.30e-09,98;UBERON:0004765,7.11e-09,90;UBERON:0002405,7.21e-09,93;UBERON:0001434,4.49e-07,100;UBERON:0002193,5.58e-07,108 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0.247532705920093,0,0.672325146451775,0,0,0,0.246242116153576,0,0,0,0.136874425072884,0.125542639594803,0.305653622991805,0.328402357799783,0.787107813136792,2.36018566109342,8.06041736004147,5.41856431606266,2.75826367343678,0.30120591877825,0,16.0357105201224,8.95666164670756,4.69760702935756,31.577738286317,11.8321224007384,14.3227174672462,0.223915474239924,0,0,4.65274364094607,2.64513160582167,4.85168122375632,7.90258725479328,3.28934310417461,10.2203102395384,34.8107794709802,7.94098190240212,22.7022940693042,73.0860843161631,19.3645405075148,23.0225027210381,8.094420600332,2.18324920046277,5.8428105955722,108.3536978993,21.1813157870222,73.5237694668897,8.2462825046679,3.39088217956774,9.37694451171927,29.311133101487,6.24123747160254,21.1759564658495,22.1098825425934,7.82224377630302,8.47036494349955,19.3727840842678,9.20694089968912,22.4688295083028,0.422510572623884,1.70083439972035,1.88692780957538,1.23561494261145,0.150176892841506,0.32145117339416,0.285012743741249,0,0.547992461293902,0,0.546138611262131,0.889509253863555,2.56038133539904,0.400395987036012,0,1.32208974556972,0,1.1384259382189,1.76171156811282,1.14681968437569,0,0.560508562981536,0.526768169550154,5.50787356318733,9.03924754323079,9.86887195197644,0,0.651844533267181,0,0,0.779873198196215,1.17842362989935,0.664601683750863,1.35401931882508,0,0.390178042679635,0,0.276350017785848,0.289803085735052,1.33457906845854,0,0,0.566546713487831,0.383220493601921,0,1.51811815211702,0.318565414324097,0,0,0.301150238155546,0.383959833463255,0,0,0,17.9430001470012,14.9766509638764,8.83428863685074,0,0.670700859703636,0,0,0,0,0,2.91980922181582,0.0945348171640679,0,0.351339142772504,0.130979075497713,0,0,0.324547393654683,0,0.26591592103773,0.476981248610684,0,0.371457501329565,0.198762407366705,0,0.347140501607594,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,1.98788780678127,0.633152558322899,1.72131935057184,0.286836620748814,0,0,0,0,0,0,0,0.151357427644931,0,0.234321431833797,0,0,0,0,0,0.280901613404497,0.204154171254893,0,0.103325781175765,0,0,0,0,0,0.125118519871964,0,0,0,0.150238058906597,0,0.358779271377724,0,0.211931901159562,0.300091096084402,0.515262646192195,0.257640540045629,0,0.506328996723799,0,0.504867548488229,0,0,0.710019185033229,0.201504196455281,0.508681776931463,0,0,0,0.487894824518382,0.662648841607426,0.69716365721711,0.725627385107593,0.756962552626885,0.36497735907583,0,0,0,0,0,0.709840800239063,0.505754070234305,0.482022059766964,0.110293972732394,0.871517776369625,0.237270619111097,0.134831308160164,0.392442930250692,0.38474715694639,0,0,0,0,1.26755034821831,0.982827216677626,1.18157981336281,22.5146180701472,0.368965315629341,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0.462985512576611,0,0,0,0,0,0,0,0,0.141775097242386,0.806026704325635,0,0,0,0.176096868026452,1.86595303986695,10.8089965062721,3.7872730027914,0.063497894292169,0,0,0,0,0.300343057843917,0,0,0,0.07333828582095,0.517086863031111,0,0,0,0,0,0,0.266422179016099,0.285955987316295,0,0,0,0,0.791951872933429,0,0,0,1.2162378064119,0,0,0,0,0,0.144781306667579,0.205476322550383,0,71.9586624438445,11.4277840917118,14.4470475155877,12.3209314828558,0,0,0.773288812777695,0.837581326671744,1.91381625495949,0,0,0,0.24538298343828,0,0,0,0,0.157702415033935,0.234282829985426,0.300946099727719,0,0,0,0,0,0,0,0.413536052245775,6.25571182373989,1.06727557803444,0.909382714338778,0,0,0,0,0,0,0,0,0,0.154209693802656,0.355123450626254,0.0821271560138091,0,0.464841513839837,0.241718899183244,0,0,0.114814448164607,0,0.262248829918848,0,0.0770153371044148,0,0,0.105551628892876,0,0.340187410553031,0,0,0,0.501689773854853,0,0,0.223874754722178,0.438519753291869,0.261435451024901,0.512900250232778,0.328014645699706,0,0.103041011647722,0.183138929636687,0.165018999841176,0,0,0,0.386682873168488,0.154048617114644,0,0,0,0.145016693914229,0.170453254832202,0.178064071293475,0,0.192190067365106,0.382838137483752,0,0,0.94443704049192,0,0,0.532306030317022,0,0.55597265731176,0,0,0,0,0,0,0,0.78494864019923,0,0,0.117812402345686,0.404364963146632,0,0.421258456238981,0,0,2.11300293513511,0,0,1.13008116620243,0,0,0,0,0.655894752046633,0.202910376962704,0.30982349809975,0,0,0,0.35667105148125,0,0.844430541190656,0.329294892959902,1.13841952129715,0,0.0962221127255121,1.34060455107157,0,0.0941438007767792,0,0,0.443430153536676,0,0,0,0,0.238231775457789,0.411362273086194,0,0,0,2.02965735142199,0,10.0466488552223,22.1105778399605,23.3716125021841,7.96788645502238,4.78278818186467,0.199579371432817,0.957526850661834,5.50351315082095,0.973865820823666,2.24637742490767,10.9552645935932,0.156679895773023,65.1649640434175,11.8504244461122,0.481764225311099,0,30.6609291137035,15.4577405140094,0.307240764308458,0.447352215784832,0.500547425135725,0,0,4.92349595790849,11.3591384959913,9.9921590399346,0,1.30998378285754,0,1.45632626099416,7.13237659375862,0.852408440419239,2.14870036263921,0.8908940424979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| |||
|short_description=p@chr17:41393865..41393870,+ | |||
}} |
Revision as of 13:48, 11 September 2013
Short description: | p@chr17:41393865..41393870, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:41393865..41393870, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.04e-23 | 168 |
hematopoietic oligopotent progenitor cell | 1.07e-22 | 161 |
hematopoietic multipotent progenitor cell | 1.07e-22 | 161 |
hematopoietic cell | 3.99e-21 | 177 |
nongranular leukocyte | 6.98e-21 | 115 |
hematopoietic lineage restricted progenitor cell | 1.98e-20 | 120 |
leukocyte | 2.43e-20 | 136 |
classical monocyte | 4.55e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.55e-19 | 42 |
defensive cell | 7.90e-16 | 48 |
phagocyte | 7.90e-16 | 48 |
myeloid cell | 2.81e-13 | 108 |
common myeloid progenitor | 2.81e-13 | 108 |
macrophage dendritic cell progenitor | 1.69e-12 | 61 |
granulocyte monocyte progenitor cell | 1.95e-12 | 67 |
monopoietic cell | 1.03e-11 | 59 |
monocyte | 1.03e-11 | 59 |
monoblast | 1.03e-11 | 59 |
promonocyte | 1.03e-11 | 59 |
myeloid leukocyte | 2.33e-11 | 72 |
myeloid lineage restricted progenitor cell | 2.70e-11 | 66 |
lymphocyte | 1.99e-09 | 53 |
common lymphoid progenitor | 1.99e-09 | 53 |
lymphoid lineage restricted progenitor cell | 7.69e-09 | 52 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.34e-11 | 76 |
bone element | 4.15e-11 | 82 |
hematopoietic system | 4.30e-09 | 98 |
blood island | 4.30e-09 | 98 |
skeletal element | 7.11e-09 | 90 |
immune system | 7.21e-09 | 93 |
skeletal system | 4.49e-07 | 100 |
hemolymphoid system | 5.58e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
cancer | 5.69e-49 | 235 |
disease of cellular proliferation | 1.30e-47 | 239 |
cell type cancer | 6.46e-34 | 143 |
organ system cancer | 1.35e-28 | 137 |
carcinoma | 1.38e-25 | 106 |
hematologic cancer | 4.03e-13 | 51 |
immune system cancer | 4.03e-13 | 51 |
squamous cell carcinoma | 1.05e-10 | 14 |
adenocarcinoma | 4.03e-10 | 25 |
lymphoma | 2.52e-08 | 10 |
gastrointestinal system cancer | 4.65e-08 | 14 |
disease of anatomical entity | 8.80e-08 | 39 |
leukemia | 4.75e-07 | 39 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.