FFCP PHASE1:Hg19::chr19:1496410..1496421,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1239|description=CAGE_peak_at_chr19:1496410..1496421,+|id=chr19:1496410..1496421,+|ontology_enrichment_celltype=CL:0000223!4.28e-07!59;CL:0002251!7.87e-07!21|ontology_enrichment_celltype_v019=CL:0002521;2.79e-07;3!CL:0000182;5.39e-07;12|ontology_enrichment_celltype_v019_2=CL:0002521,3.35e-07,3;CL:0000182,5.00e-07,12|ontology_enrichment_development_v019=UBERON:0007297;2.72e-10;2!UBERON:0009117;3.43e-08;10!UBERON:0005564;3.43e-08;10!UBERON:0004161;1.49e-07;11|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003135!2.23e-09!11;UBERON:0003101!5.00e-08!22;UBERON:0000079!5.00e-08!22;UBERON:0000473!9.99e-08!8;UBERON:0001007!1.02e-07!155;UBERON:0001555!1.02e-07!155;UBERON:0007026!1.02e-07!155;UBERON:0004921!4.52e-07!129;UBERON:0004185!4.52e-07!129;UBERON:0004119!9.67e-07!169;UBERON:0000925!9.67e-07!169;UBERON:0006595!9.67e-07!169|ontology_enrichment_uberon_v019=UBERON:0001301;3.25e-19;1!UBERON:0002107;1.24e-15;19!UBERON:0006925;1.24e-15;19!UBERON:0003135;2.20e-15;11!UBERON:0002108;2.70e-15;4!UBERON:0002423;5.70e-12;25!UBERON:0000473;5.18e-10;8!UBERON:0002365;1.24e-09;31!UBERON:0002330;1.24e-09;31!UBERON:0002368;1.99e-08;33!UBERON:0003101;5.32e-08;22!UBERON:0000079;5.32e-08;22!UBERON:0002190;2.79e-07;3!UBERON:0006947;2.79e-07;3!UBERON:0004054;2.79e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0001301,4.69e-19,1;UBERON:0002107,1.15e-15,19;UBERON:0006925,1.15e-15,19;UBERON:0008836,1.15e-15,19;UBERON:0003135,2.25e-15,11;UBERON:0002108,2.34e-15,4;UBERON:0008835,1.39e-13,22;UBERON:0003894,1.39e-13,22;UBERON:0009854,5.23e-13,23;UBERON:0007499,5.38e-12,25;UBERON:0009497,5.38e-12,25;UBERON:0000015,5.38e-12,25;UBERON:0002423,5.38e-12,25;UBERON:0006235,5.38e-12,25;UBERON:0004161,5.38e-12,25;UBERON:0009856,1.51e-11,26;UBERON:0000473,4.84e-10,8;UBERON:0002365,9.77e-10,31;UBERON:0002330,9.77e-10,31;UBERON:0002368,1.17e-08,35;UBERON:0005172,1.83e-08,54;UBERON:0005173,1.83e-08,54;UBERON:0003101,5.39e-08,22;UBERON:0000079,5.39e-08,22;UBERON:0002417,1.28e-07,60;UBERON:0000916,1.28e-07,60;UBERON:0006947,3.16e-07,3;UBERON:0004054,3.16e-07,3;UBERON:0002190,3.35e-07,3;UBERON:0000949,8.65e-07,45|phase1_expression=0.363356758541113,0.642301571672949,0,0,0,0,0,0,1.04474251279935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0.263504357079378,0.785874452986276,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49333509683432,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0.161646056818812,0,0,0,0,0,0,0.121973706129595,0.397589304964456,0.232387885739037,0,0.252320850875628,0,0,0,0,0,0.721879481669586,0.236613600079688,0,0.241011029883482,0.110293972732394,0,0,0,0,0,0,0,0,0,3.80265104465493,1.96565443335525,0,0,0.737930631258681,0.171567810298526,0.109750285408626,0,0,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0.381988425558278,0,0,0.205654985406647,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0,0,0,0.131124414959424,0,0.231046011313244,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0.578775534266688,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.390776190804081,0.278406173895242,0,0,0,0,0,0,0.121360521749513,0,0.284136146806413,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0.0927680981618513,0,0,0.61221999997337,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0.179515288819544,0,0,0.0915975934018623,0,0,0,0,0.451191321234361,0.784250137270958,0.671286347903371,0.189753732724185,0,0.210998064528027,0,0.424059214301822,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0.242780379534093,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0.195984794828755,0,1.04836000945218,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0,0.240476460754601,0.213452994739353,0.39961921916426,0.288180834308212,0.114536596165916,0,0,0,0,0.271808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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1239 | |||
|description=CAGE_peak_at_chr19:1496410..1496421,+ | |||
|id=chr19:1496410..1496421,+ | |||
|ontology_enrichment_celltype=CL:0000223!4.28e-07!59;CL:0002251!7.87e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002521;2.79e-07;3!CL:0000182;5.39e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002521,3.35e-07,3;CL:0000182,5.00e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0007297;2.72e-10;2!UBERON:0009117;3.43e-08;10!UBERON:0005564;3.43e-08;10!UBERON:0004161;1.49e-07;11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003135!2.23e-09!11;UBERON:0003101!5.00e-08!22;UBERON:0000079!5.00e-08!22;UBERON:0000473!9.99e-08!8;UBERON:0001007!1.02e-07!155;UBERON:0001555!1.02e-07!155;UBERON:0007026!1.02e-07!155;UBERON:0004921!4.52e-07!129;UBERON:0004185!4.52e-07!129;UBERON:0004119!9.67e-07!169;UBERON:0000925!9.67e-07!169;UBERON:0006595!9.67e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0001301;3.25e-19;1!UBERON:0002107;1.24e-15;19!UBERON:0006925;1.24e-15;19!UBERON:0003135;2.20e-15;11!UBERON:0002108;2.70e-15;4!UBERON:0002423;5.70e-12;25!UBERON:0000473;5.18e-10;8!UBERON:0002365;1.24e-09;31!UBERON:0002330;1.24e-09;31!UBERON:0002368;1.99e-08;33!UBERON:0003101;5.32e-08;22!UBERON:0000079;5.32e-08;22!UBERON:0002190;2.79e-07;3!UBERON:0006947;2.79e-07;3!UBERON:0004054;2.79e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001301,4.69e-19,1;UBERON:0002107,1.15e-15,19;UBERON:0006925,1.15e-15,19;UBERON:0008836,1.15e-15,19;UBERON:0003135,2.25e-15,11;UBERON:0002108,2.34e-15,4;UBERON:0008835,1.39e-13,22;UBERON:0003894,1.39e-13,22;UBERON:0009854,5.23e-13,23;UBERON:0007499,5.38e-12,25;UBERON:0009497,5.38e-12,25;UBERON:0000015,5.38e-12,25;UBERON:0002423,5.38e-12,25;UBERON:0006235,5.38e-12,25;UBERON:0004161,5.38e-12,25;UBERON:0009856,1.51e-11,26;UBERON:0000473,4.84e-10,8;UBERON:0002365,9.77e-10,31;UBERON:0002330,9.77e-10,31;UBERON:0002368,1.17e-08,35;UBERON:0005172,1.83e-08,54;UBERON:0005173,1.83e-08,54;UBERON:0003101,5.39e-08,22;UBERON:0000079,5.39e-08,22;UBERON:0002417,1.28e-07,60;UBERON:0000916,1.28e-07,60;UBERON:0006947,3.16e-07,3;UBERON:0004054,3.16e-07,3;UBERON:0002190,3.35e-07,3;UBERON:0000949,8.65e-07,45 | |||
|phase1_expression=0.363356758541113,0.642301571672949,0,0,0,0,0,0,1.04474251279935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0.263504357079378,0.785874452986276,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49333509683432,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0.161646056818812,0,0,0,0,0,0,0.121973706129595,0.397589304964456,0.232387885739037,0,0.252320850875628,0,0,0,0,0,0.721879481669586,0.236613600079688,0,0.241011029883482,0.110293972732394,0,0,0,0,0,0,0,0,0,3.80265104465493,1.96565443335525,0,0,0.737930631258681,0.171567810298526,0.109750285408626,0,0,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0.381988425558278,0,0,0.205654985406647,0,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0,0,0,0.131124414959424,0,0.231046011313244,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0.578775534266688,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.390776190804081,0.278406173895242,0,0,0,0,0,0,0.121360521749513,0,0.284136146806413,0,0,0,0,0,0,0.16480387422676,0,0,0,0,0,0,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0.0927680981618513,0,0,0.61221999997337,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0.179515288819544,0,0,0.0915975934018623,0,0,0,0,0.451191321234361,0.784250137270958,0.671286347903371,0.189753732724185,0,0.210998064528027,0,0.424059214301822,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0.242780379534093,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0.195984794828755,0,1.04836000945218,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0,0.240476460754601,0.213452994739353,0.39961921916426,0.288180834308212,0.114536596165916,0,0,0,0,0.271808412147228,0.104602846312333,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0.551482276150566,0.741742725430498,0.337017719270924,0,0,0,0.136203406111576,0,0,0.415440338029185,0,0,0.0607495566580247,0,0,0.0524545881349981,0,0,0,0,0,0,0,0.864221491201268,0,0,0,0,0.113312091520126,3.07759690723973,1.32506888912221,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0.250381861413,0,0,0.124192805882767,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0.3062454773532,0.0642292250964595,0,0,0,0,0.0691572524642179,0.161475645631851,0,0.0981477185010256,0.11796972334774,0.366857197043358,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0.206686796501184,0,0.546974809018219,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0,0,0,0.500335809236594,0.158013611732727,0,0,0,0,0.3414369541879,0,0.430227358820278,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0.109940516745429,0,1.15761237161917,1.96703604453562,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0.126698501011437,0,0.801652215796681,0.275684698604535,0.752122617877125,1.43979526614655,2.41167717140561,0,0,0.213233981900981,0,0.129177819672012,0.0620747142958579,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | |||
|short_description=p@chr19:1496410..1496421,+ | |||
}} |
Revision as of 19:07, 11 September 2013
Short description: | p@chr19:1496410..1496421, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:1496410..1496421, + |
Coexpression cluster: | C1239_Hepatocyte_liver_small_testis_colon_breast_eye |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
subcutaneous fat cell | 3.35e-07 | 3 |
hepatocyte | 5.00e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
epididymis | 4.69e-19 | 1 |
liver | 1.15e-15 | 19 |
digestive gland | 1.15e-15 | 19 |
liver bud | 1.15e-15 | 19 |
male reproductive organ | 2.25e-15 | 11 |
small intestine | 2.34e-15 | 4 |
hepatic diverticulum | 1.39e-13 | 22 |
liver primordium | 1.39e-13 | 22 |
digestive tract diverticulum | 5.23e-13 | 23 |
epithelial sac | 5.38e-12 | 25 |
epithelium of foregut-midgut junction | 5.38e-12 | 25 |
anatomical boundary | 5.38e-12 | 25 |
hepatobiliary system | 5.38e-12 | 25 |
foregut-midgut junction | 5.38e-12 | 25 |
septum transversum | 5.38e-12 | 25 |
sac | 1.51e-11 | 26 |
testis | 4.84e-10 | 8 |
exocrine gland | 9.77e-10 | 31 |
exocrine system | 9.77e-10 | 31 |
endocrine gland | 1.17e-08 | 35 |
abdomen element | 1.83e-08 | 54 |
abdominal segment element | 1.83e-08 | 54 |
male organism | 5.39e-08 | 22 |
male reproductive system | 5.39e-08 | 22 |
abdominal segment of trunk | 1.28e-07 | 60 |
abdomen | 1.28e-07 | 60 |
male genital duct | 3.16e-07 | 3 |
internal male genitalia | 3.16e-07 | 3 |
subcutaneous adipose tissue | 3.35e-07 | 3 |
endocrine system | 8.65e-07 | 45 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.