FFCP PHASE1:Hg19::chr2:108931987..108932010,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C235|description=CAGE_peak_at_chr2:108931987..108932010,-|id=chr2:108931987..108932010,-|ontology_enrichment_celltype=CL:0002231!1.90e-08!3;CL:0000313!3.73e-07!1;CL:0002563!8.77e-07!4|ontology_enrichment_celltype_v019=CL:0002563;3.29e-23;4!CL:0000313;4.10e-23;1!CL:0002253;1.85e-12;2!CL:0000159;2.90e-12;2!CL:0002535;2.90e-12;2!CL:0002231;8.31e-09;3|ontology_enrichment_celltype_v019_2=CL:0000313,2.62e-23,1;CL:0002563,3.29e-23,4;CL:0002253,1.85e-12,2;CL:0000159,2.32e-12,2;CL:0002535,3.62e-12,2;CL:0002231,8.31e-09,3|ontology_enrichment_development_v019=UBERON:0003104;2.84e-07;31|ontology_enrichment_disease=DOID:2152!3.73e-07!1|ontology_enrichment_disease_v019=DOID:2152;4.10e-23;1!DOID:299;1.41e-08;25!DOID:3119;2.68e-07;14|ontology_enrichment_disease_v019_2=DOID:2152,2.62e-23,1;DOID:299,1.37e-08,25;DOID:3119,2.68e-07,14|ontology_enrichment_uberon=UBERON:0004907!1.25e-18!5;UBERON:0000160!9.49e-15!27;UBERON:0001052!1.23e-13!4;UBERON:0001046!1.24e-13!19;UBERON:0000059!7.38e-13!11;UBERON:0005409!3.98e-11!35;UBERON:0004921!2.08e-07!129;UBERON:0004185!2.08e-07!129;UBERON:0004911!3.73e-07!1;UBERON:0001154!5.89e-07!1;UBERON:0001153!5.89e-07!1;UBERON:0007029!6.99e-07!1;UBERON:0002336!8.27e-07!1;UBERON:0001018!8.27e-07!1;UBERON:0002473!8.27e-07!1;UBERON:0005340!8.27e-07!1;UBERON:0002316!8.27e-07!1;UBERON:0003544!8.27e-07!1;UBERON:0001020!8.27e-07!1;UBERON:0005970!8.27e-07!1;UBERON:0002437!8.27e-07!1;UBERON:0001242!8.77e-07!4;UBERON:0001262!8.77e-07!4;UBERON:0004786!8.77e-07!4;UBERON:0004808!8.77e-07!4;UBERON:0001277!8.77e-07!4|ontology_enrichment_uberon_v019=UBERON:0001242;3.29e-23;4!UBERON:0001262;3.29e-23;4!UBERON:0004786;3.29e-23;4!UBERON:0004808;3.29e-23;4!UBERON:0001277;3.29e-23;4!UBERON:0004911;4.10e-23;1!UBERON:0001052;4.11e-23;4!UBERON:0004907;1.04e-18;5!UBERON:0000485;1.02e-13;7!UBERON:0003929;1.02e-13;7!UBERON:0006955;2.90e-12;2!UBERON:0004909;2.90e-12;2!UBERON:0004801;2.90e-12;2!UBERON:0003350;3.95e-12;8!UBERON:0000160;8.58e-12;17!UBERON:0005409;2.28e-09;22!UBERON:0000059;4.80e-09;11|ontology_enrichment_uberon_v019_2=UBERON:0004911,2.62e-23,1;UBERON:0001242,3.29e-23,4;UBERON:0001262,3.29e-23,4;UBERON:0004786,3.29e-23,4;UBERON:0004808,3.29e-23,4;UBERON:0001277,3.29e-23,4;UBERON:0001052,4.11e-23,4;UBERON:0004907,1.04e-18,5;UBERON:0004909,2.32e-12,2;UBERON:0006955,3.62e-12,2;UBERON:0004801,3.62e-12,2;UBERON:0003350,3.95e-12,8;UBERON:0000160,8.59e-12,17;UBERON:0001046,3.19e-11,19;UBERON:0000485,6.87e-11,9;UBERON:0000059,4.80e-09,11;UBERON:0005409,2.34e-08,25;UBERON:0003929,5.83e-07,54|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.01034099695747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.877350463246,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12284324244932,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828851746593443,1.0077309914171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,3.67517985728246,0,0.995261931078505,0,0,0,0,0,0.269604531922708,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0.209205692624666,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,1.16495949527454,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.472834243795189,0.891727998294968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512483037175893,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,2.24217730651031,0.913158720509496,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34226518157351,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0.655678681511872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0.269475606319761,0,0,0,0,0,0|short_description=p@chr2:108931987..108932010,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C235 | |||
|description=CAGE_peak_at_chr2:108931987..108932010,- | |||
|id=chr2:108931987..108932010,- | |||
|ontology_enrichment_celltype=CL:0002231!1.90e-08!3;CL:0000313!3.73e-07!1;CL:0002563!8.77e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002563;3.29e-23;4!CL:0000313;4.10e-23;1!CL:0002253;1.85e-12;2!CL:0000159;2.90e-12;2!CL:0002535;2.90e-12;2!CL:0002231;8.31e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000313,2.62e-23,1;CL:0002563,3.29e-23,4;CL:0002253,1.85e-12,2;CL:0000159,2.32e-12,2;CL:0002535,3.62e-12,2;CL:0002231,8.31e-09,3 | |||
|ontology_enrichment_development_v019=UBERON:0003104;2.84e-07;31 | |||
|ontology_enrichment_disease=DOID:2152!3.73e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:2152;4.10e-23;1!DOID:299;1.41e-08;25!DOID:3119;2.68e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,2.62e-23,1;DOID:299,1.37e-08,25;DOID:3119,2.68e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004907!1.25e-18!5;UBERON:0000160!9.49e-15!27;UBERON:0001052!1.23e-13!4;UBERON:0001046!1.24e-13!19;UBERON:0000059!7.38e-13!11;UBERON:0005409!3.98e-11!35;UBERON:0004921!2.08e-07!129;UBERON:0004185!2.08e-07!129;UBERON:0004911!3.73e-07!1;UBERON:0001154!5.89e-07!1;UBERON:0001153!5.89e-07!1;UBERON:0007029!6.99e-07!1;UBERON:0002336!8.27e-07!1;UBERON:0001018!8.27e-07!1;UBERON:0002473!8.27e-07!1;UBERON:0005340!8.27e-07!1;UBERON:0002316!8.27e-07!1;UBERON:0003544!8.27e-07!1;UBERON:0001020!8.27e-07!1;UBERON:0005970!8.27e-07!1;UBERON:0002437!8.27e-07!1;UBERON:0001242!8.77e-07!4;UBERON:0001262!8.77e-07!4;UBERON:0004786!8.77e-07!4;UBERON:0004808!8.77e-07!4;UBERON:0001277!8.77e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0001242;3.29e-23;4!UBERON:0001262;3.29e-23;4!UBERON:0004786;3.29e-23;4!UBERON:0004808;3.29e-23;4!UBERON:0001277;3.29e-23;4!UBERON:0004911;4.10e-23;1!UBERON:0001052;4.11e-23;4!UBERON:0004907;1.04e-18;5!UBERON:0000485;1.02e-13;7!UBERON:0003929;1.02e-13;7!UBERON:0006955;2.90e-12;2!UBERON:0004909;2.90e-12;2!UBERON:0004801;2.90e-12;2!UBERON:0003350;3.95e-12;8!UBERON:0000160;8.58e-12;17!UBERON:0005409;2.28e-09;22!UBERON:0000059;4.80e-09;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004911,2.62e-23,1;UBERON:0001242,3.29e-23,4;UBERON:0001262,3.29e-23,4;UBERON:0004786,3.29e-23,4;UBERON:0004808,3.29e-23,4;UBERON:0001277,3.29e-23,4;UBERON:0001052,4.11e-23,4;UBERON:0004907,1.04e-18,5;UBERON:0004909,2.32e-12,2;UBERON:0006955,3.62e-12,2;UBERON:0004801,3.62e-12,2;UBERON:0003350,3.95e-12,8;UBERON:0000160,8.59e-12,17;UBERON:0001046,3.19e-11,19;UBERON:0000485,6.87e-11,9;UBERON:0000059,4.80e-09,11;UBERON:0005409,2.34e-08,25;UBERON:0003929,5.83e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.01034099695747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.877350463246,0.200506470303285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12284324244932,0,0,0,0,0,0,0,0,0,0,0,0,0,0.828851746593443,1.0077309914171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,3.67517985728246,0,0.995261931078505,0,0,0,0,0,0.269604531922708,0,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0.209205692624666,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,1.16495949527454,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0.472834243795189,0.891727998294968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512483037175893,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,2.24217730651031,0.913158720509496,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34226518157351,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0.655678681511872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0.269475606319761,0,0,0,0,0,0 | |||
|short_description=p@chr2:108931987..108932010,- | |||
}} |
Revision as of 12:53, 12 September 2013
Short description: | p@chr2:108931987..108932010, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:108931987..108932010, - |
Coexpression cluster: | C235_Intestinal_Prostate_liver_colon_small_kidney_pancreas |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
serous secreting cell | 2.62e-23 | 1 |
intestinal epithelial cell | 3.29e-23 | 4 |
epithelial cell of large intestine | 1.85e-12 | 2 |
seromucus secreting cell | 2.32e-12 | 2 |
epithelial cell of cervix | 3.62e-12 | 2 |
epithelial cell of prostate | 8.31e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
epithelium of female gonad | 2.62e-23 | 1 |
intestinal mucosa | 3.29e-23 | 4 |
wall of intestine | 3.29e-23 | 4 |
gastrointestinal system mucosa | 3.29e-23 | 4 |
gastrointestinal system epithelium | 3.29e-23 | 4 |
intestinal epithelium | 3.29e-23 | 4 |
rectum | 4.11e-23 | 4 |
lower digestive tract | 1.04e-18 | 5 |
epithelium of gonad | 2.32e-12 | 2 |
uterine epithelium | 3.62e-12 | 2 |
cervix epithelium | 3.62e-12 | 2 |
epithelium of mucosa | 3.95e-12 | 8 |
intestine | 8.59e-12 | 17 |
hindgut | 3.19e-11 | 19 |
simple columnar epithelium | 6.87e-11 | 9 |
large intestine | 4.80e-09 | 11 |
gastrointestinal system | 2.34e-08 | 25 |
gut epithelium | 5.83e-07 | 54 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 2.62e-23 | 1 |
adenocarcinoma | 1.37e-08 | 25 |
gastrointestinal system cancer | 2.68e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.