FFCP PHASE1:Hg19::chr2:238267161..238267198,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C4204|description=CAGE_peak_at_chr2:238267161..238267198,+|id=chr2:238267161..238267198,+|ontology_enrichment_celltype=CL:0000055!3.68e-39!180;CL:0000057!3.14e-27!75;CL:0000183!2.24e-14!59;CL:0000680!5.74e-14!57;CL:0000056!5.74e-14!57;CL:0000355!5.74e-14!57;CL:0000187!3.15e-13!54;CL:0000393!2.17e-11!60;CL:0000211!2.17e-11!60;CL:0002620!3.46e-11!23;CL:0000048!1.60e-10!430;CL:0000723!1.10e-09!436;CL:0000034!2.66e-09!444;CL:0000188!1.63e-07!9;CL:0000192!2.89e-07!42;CL:0000514!2.89e-07!42;CL:0002570!3.89e-07!8|ontology_enrichment_celltype_v019=CL:0002620;2.74e-14;23!CL:0000057;7.00e-12;73!CL:0002320;4.03e-09;188!CL:0000188;4.90e-09;9!CL:0000134;7.15e-09;55!CL:0002570;1.00e-08;8!CL:0000723;2.80e-08;61!CL:0000187;4.10e-08;55!CL:0000048;1.23e-07;58!CL:0000499;8.03e-07;28|ontology_enrichment_celltype_v019_2=CL:0000057,4.18e-31,76;CL:0000048,6.65e-17,427;CL:0000723,4.77e-16,433;CL:0000034,5.93e-15,441;CL:0002620,2.90e-14,23;CL:0000680,3.09e-12,58;CL:0000056,3.09e-12,58;CL:0000355,3.09e-12,58;CL:0000187,6.65e-12,55;CL:0002320,3.14e-11,361;CL:0000393,1.10e-09,61;CL:0000211,1.10e-09,61;CL:0000188,3.49e-09,9;CL:0002570,1.05e-08,8;CL:0000134,1.27e-08,354;CL:0000219,4.24e-07,386;CL:0000499,8.08e-07,28|ontology_enrichment_development_v019=CL:0000355;1.51e-07;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!2.55e-18!83;UBERON:0002329!2.55e-18!83;UBERON:0003077!2.55e-18!83;UBERON:0003059!2.55e-18!83;UBERON:0007282!2.55e-18!83;UBERON:0009618!2.55e-18!83;UBERON:0007285!2.55e-18!83;UBERON:0004290!1.08e-15!70;UBERON:0002385!7.25e-15!63;UBERON:0001015!7.25e-15!63;UBERON:0000383!7.25e-15!63;UBERON:0001134!2.58e-14!61;UBERON:0002036!2.58e-14!61;UBERON:0003082!2.58e-14!61;UBERON:0005256!9.19e-13!143;UBERON:0000486!2.19e-12!82;UBERON:0003102!2.10e-09!95;UBERON:0002100!3.71e-08!216;UBERON:0002199!6.98e-08!45;UBERON:0002416!6.98e-08!45;UBERON:0000475!1.49e-07!365;UBERON:0000948!1.91e-07!24;UBERON:0005498!1.91e-07!24;UBERON:0004140!1.91e-07!24;UBERON:0009881!1.91e-07!24;UBERON:0004141!1.91e-07!24;UBERON:0003084!1.91e-07!24;UBERON:0007005!1.91e-07!24;UBERON:0004139!1.91e-07!24;UBERON:0004291!1.91e-07!24;UBERON:0007100!1.94e-07!27;UBERON:0003104!5.00e-07!238;UBERON:0009142!5.00e-07!238;UBERON:0000481!5.33e-07!347|ontology_enrichment_uberon_v019=UBERON:0002385;1.14e-10;31!UBERON:0001015;1.14e-10;31!UBERON:0000383;1.14e-10;31!UBERON:0002384;6.41e-10;198!UBERON:0002204;1.72e-08;70!UBERON:0001134;4.88e-08;16!UBERON:0002036;4.88e-08;16!UBERON:0004905;3.08e-07;8!UBERON:0000982;3.08e-07;8!UBERON:0004770;3.08e-07;8!UBERON:0002199;8.67e-07;46!UBERON:0002416;8.67e-07;46|ontology_enrichment_uberon_v019_2=UBERON:0002329,1.61e-14,71;UBERON:0003059,1.61e-14,71;UBERON:0007282,1.61e-14,71;UBERON:0004290,1.61e-14,71;UBERON:0009618,1.61e-14,71;UBERON:0003077,4.04e-14,72;UBERON:0007285,4.04e-14,72;UBERON:0007524,9.84e-14,73;UBERON:0007503,2.84e-13,78;UBERON:0002385,1.74e-12,64;UBERON:0001015,1.74e-12,64;UBERON:0000383,1.74e-12,64;UBERON:0001134,2.11e-12,62;UBERON:0002036,2.11e-12,62;UBERON:0003082,2.11e-12,62;UBERON:0000486,3.19e-12,83;UBERON:0002384,7.26e-11,371;UBERON:0005256,8.08e-11,122;UBERON:0003104,1.55e-10,160;UBERON:0009142,1.55e-10,160;UBERON:0002199,3.63e-10,46;UBERON:0002416,3.63e-10,46;UBERON:0003102,7.07e-09,99;UBERON:0002097,6.17e-08,41;UBERON:0000926,7.11e-08,315;UBERON:0004120,7.11e-08,315;UBERON:0006603,7.11e-08,315;UBERON:0004905,3.10e-07,8;UBERON:0000982,3.10e-07,8;UBERON:0004770,3.10e-07,8|phase1_expression=1.81678379270557,7.27941781229343,0.281908808191942,2.00146596706261,2.68176656656373,0,0,15.7929968356708,14.3652095509911,0,0,0.655324116390517,0.263766978228454,18.1936538851269,11.930305526205,6.05092631806598,4.21886169616784,8.76372108464848,6.34312638427659,0.738726348460727,0.408001382488506,1.25381888591235,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,4.02420515822182,4.34732710268003,23.8549840573814,1.50401373190767,17.0918892373772,0.795285947051099,3.40644409211845,0.189069634328136,0.221729397462564,0.175669571386252,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.96971951695318,2.65924074495618,3.44263870114369,25.8152958673932,4.61068896857864,1.12135520028461,1.06748995729705,5.92002116201184,1.55605517699883,3.63718814588158,3.59616186849609,4.69208025699287,8.64263886719998,2.34321431833797,11.2377627658915,0,17.6349443051125,3.05329696473789,2.10434827678571,3.08991774744947,9.1869377064702,6.26455018290017,4.75298593408521,3.56400857184616,12.6106133932064,0,5.03032699271367,3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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C4204 | |||
|description=CAGE_peak_at_chr2:238267161..238267198,+ | |||
|id=chr2:238267161..238267198,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.68e-39!180;CL:0000057!3.14e-27!75;CL:0000183!2.24e-14!59;CL:0000680!5.74e-14!57;CL:0000056!5.74e-14!57;CL:0000355!5.74e-14!57;CL:0000187!3.15e-13!54;CL:0000393!2.17e-11!60;CL:0000211!2.17e-11!60;CL:0002620!3.46e-11!23;CL:0000048!1.60e-10!430;CL:0000723!1.10e-09!436;CL:0000034!2.66e-09!444;CL:0000188!1.63e-07!9;CL:0000192!2.89e-07!42;CL:0000514!2.89e-07!42;CL:0002570!3.89e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.74e-14;23!CL:0000057;7.00e-12;73!CL:0002320;4.03e-09;188!CL:0000188;4.90e-09;9!CL:0000134;7.15e-09;55!CL:0002570;1.00e-08;8!CL:0000723;2.80e-08;61!CL:0000187;4.10e-08;55!CL:0000048;1.23e-07;58!CL:0000499;8.03e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.18e-31,76;CL:0000048,6.65e-17,427;CL:0000723,4.77e-16,433;CL:0000034,5.93e-15,441;CL:0002620,2.90e-14,23;CL:0000680,3.09e-12,58;CL:0000056,3.09e-12,58;CL:0000355,3.09e-12,58;CL:0000187,6.65e-12,55;CL:0002320,3.14e-11,361;CL:0000393,1.10e-09,61;CL:0000211,1.10e-09,61;CL:0000188,3.49e-09,9;CL:0002570,1.05e-08,8;CL:0000134,1.27e-08,354;CL:0000219,4.24e-07,386;CL:0000499,8.08e-07,28 | |||
|ontology_enrichment_development_v019=CL:0000355;1.51e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.55e-18!83;UBERON:0002329!2.55e-18!83;UBERON:0003077!2.55e-18!83;UBERON:0003059!2.55e-18!83;UBERON:0007282!2.55e-18!83;UBERON:0009618!2.55e-18!83;UBERON:0007285!2.55e-18!83;UBERON:0004290!1.08e-15!70;UBERON:0002385!7.25e-15!63;UBERON:0001015!7.25e-15!63;UBERON:0000383!7.25e-15!63;UBERON:0001134!2.58e-14!61;UBERON:0002036!2.58e-14!61;UBERON:0003082!2.58e-14!61;UBERON:0005256!9.19e-13!143;UBERON:0000486!2.19e-12!82;UBERON:0003102!2.10e-09!95;UBERON:0002100!3.71e-08!216;UBERON:0002199!6.98e-08!45;UBERON:0002416!6.98e-08!45;UBERON:0000475!1.49e-07!365;UBERON:0000948!1.91e-07!24;UBERON:0005498!1.91e-07!24;UBERON:0004140!1.91e-07!24;UBERON:0009881!1.91e-07!24;UBERON:0004141!1.91e-07!24;UBERON:0003084!1.91e-07!24;UBERON:0007005!1.91e-07!24;UBERON:0004139!1.91e-07!24;UBERON:0004291!1.91e-07!24;UBERON:0007100!1.94e-07!27;UBERON:0003104!5.00e-07!238;UBERON:0009142!5.00e-07!238;UBERON:0000481!5.33e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.14e-10;31!UBERON:0001015;1.14e-10;31!UBERON:0000383;1.14e-10;31!UBERON:0002384;6.41e-10;198!UBERON:0002204;1.72e-08;70!UBERON:0001134;4.88e-08;16!UBERON:0002036;4.88e-08;16!UBERON:0004905;3.08e-07;8!UBERON:0000982;3.08e-07;8!UBERON:0004770;3.08e-07;8!UBERON:0002199;8.67e-07;46!UBERON:0002416;8.67e-07;46 | |||
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| |||
|short_description=p@chr2:238267161..238267198,+ | |||
}} |
Revision as of 17:36, 12 September 2013
Short description: | p@chr2:238267161..238267198, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:238267161..238267198, + |
Coexpression cluster: | C4204_Skeletal_tenocyte_Fibroblast_Smooth_Olfactory_Nucleus_Mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.18e-31 | 76 |
multi fate stem cell | 6.65e-17 | 427 |
somatic stem cell | 4.77e-16 | 433 |
stem cell | 5.93e-15 | 441 |
skin fibroblast | 2.90e-14 | 23 |
muscle precursor cell | 3.09e-12 | 58 |
myoblast | 3.09e-12 | 58 |
multi-potent skeletal muscle stem cell | 3.09e-12 | 58 |
muscle cell | 6.65e-12 | 55 |
connective tissue cell | 3.14e-11 | 361 |
electrically responsive cell | 1.10e-09 | 61 |
electrically active cell | 1.10e-09 | 61 |
cell of skeletal muscle | 3.49e-09 | 9 |
mesenchymal stem cell of adipose | 1.05e-08 | 8 |
mesenchymal cell | 1.27e-08 | 354 |
motile cell | 4.24e-07 | 386 |
stromal cell | 8.08e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
somite | 1.61e-14 | 71 |
presomitic mesoderm | 1.61e-14 | 71 |
presumptive segmental plate | 1.61e-14 | 71 |
dermomyotome | 1.61e-14 | 71 |
trunk paraxial mesoderm | 1.61e-14 | 71 |
paraxial mesoderm | 4.04e-14 | 72 |
presumptive paraxial mesoderm | 4.04e-14 | 72 |
dense mesenchyme tissue | 9.84e-14 | 73 |
epithelial vesicle | 2.84e-13 | 78 |
muscle tissue | 1.74e-12 | 64 |
musculature | 1.74e-12 | 64 |
musculature of body | 1.74e-12 | 64 |
skeletal muscle tissue | 2.11e-12 | 62 |
striated muscle tissue | 2.11e-12 | 62 |
myotome | 2.11e-12 | 62 |
multilaminar epithelium | 3.19e-12 | 83 |
connective tissue | 7.26e-11 | 371 |
trunk mesenchyme | 8.08e-11 | 122 |
mesenchyme | 1.55e-10 | 160 |
entire embryonic mesenchyme | 1.55e-10 | 160 |
integument | 3.63e-10 | 46 |
integumental system | 3.63e-10 | 46 |
surface structure | 7.07e-09 | 99 |
skin of body | 6.17e-08 | 41 |
mesoderm | 7.11e-08 | 315 |
mesoderm-derived structure | 7.11e-08 | 315 |
presumptive mesoderm | 7.11e-08 | 315 |
articulation | 3.10e-07 | 8 |
skeletal joint | 3.10e-07 | 8 |
articular system | 3.10e-07 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.