FFCP PHASE1:Mm9::chr11:60940249..60940264,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=57916|HGNC=|MCL_coexpression_id=18|UniProt=Q9ET35,B1ATI3,A5D8Y6|association_with_transcript=0bp_to_ENSMUST00000010286,ENSMUST00000146033,uc007jha.1_5end|description=CAGE_peak_3_at_Tnfrsf13b_5end|id=chr11:60940249..60940264,+|ontology_enrichment_celltype=CL:0000553!8.76e-13!6;CL:0000556!8.76e-13!6;CL:0000050!3.52e-08!9;CL:0002027!5.74e-07!3;CL:0002006!5.74e-07!3;CL:0002024!5.74e-07!3|ontology_enrichment_celltype_v019_2=CL:0000553,3.14e-30,6;CL:0000556,3.14e-30,6;CL:0000050,4.81e-20,9;CL:0002027,2.28e-15,3;CL:0002006,2.28e-15,3;CL:0002024,2.28e-15,3;CL:0000839,9.33e-14,13;CL:0000763,4.27e-11,16;CL:0002031,2.35e-09,25;CL:0000049,2.85e-09,19;CL:0000988,3.83e-07,32;CL:0002032,3.83e-07,32;CL:0000037,3.83e-07,32;CL:0000837,3.83e-07,32|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002465!5.49e-07!3;UBERON:0002193!5.84e-07!48;UBERON:0007023!9.06e-07!51|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.06e-15,48;UBERON:0002405,1.06e-15,48;UBERON:0002465,2.04e-15,3;UBERON:0002106,2.74e-13,6;UBERON:0004457,2.74e-13,6;UBERON:0000042,2.74e-13,6;UBERON:0004854,2.74e-13,6;UBERON:0009034,2.74e-13,6;UBERON:0002095,2.74e-13,6;UBERON:0004782,2.74e-13,6;UBERON:0003281,2.74e-13,6;UBERON:0009664,2.74e-13,6;UBERON:0002296,2.74e-13,6;UBERON:0005602,2.74e-13,6;UBERON:0001179,2.74e-13,6;UBERON:0006293,2.74e-13,6;UBERON:0002371,4.27e-11,16;UBERON:0001155,8.68e-11,2;UBERON:0000059,8.68e-11,2;UBERON:0001962,1.70e-10,2;UBERON:0001961,1.70e-10,2;UBERON:0001744,1.70e-10,2;UBERON:0002390,9.31e-10,45;UBERON:0003061,9.31e-10,45;UBERON:0003887,4.79e-08,10;UBERON:0001474,6.09e-08,22;UBERON:0004765,6.09e-08,22;UBERON:0001434,6.09e-08,22;UBERON:0004923,7.11e-07,24|phase1_expression=0,0,0,0,0,0,0,0.774739940649458,0,0,0,0,0,0,4.99664642723494,3.44207954562704,2.09868563438444,18.9277299214943,20.7042794744666,8.48779303596061,0.0850432901510698,0,0,2.3998863419011,1.60586496747019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.2347389695219,0,0.336093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0.91347103775248,11.9111426477699,0,0,0,0,0,0,0,0,0.722996784599558,0,0,0,0,1.86391761218122,0,0,5.36459815938042,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219550115291051,0.134206418760372,0,0,0,1.32225283331772,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0.898819408654221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224862112384854,0,0,0,0,0,0.274561413188081,0,0,0,0,0,0,0.554259570499814,0,0,0,0,0,0,0,0.157635144106191,0,0.478364305972461,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0.983528546038072,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,1.32745138339963,0,0,0,0,0,0,0,0.356497378384721,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220528398054962,0.32977250588296,0,0,0,0,0,0,7.17657699350981,0,0,1.31857919903284,2.46049609897845,3.66045077130436,0,0.139951452323658,0,0,0,0,0,0,0,0,0,0.26175594198403,0.259229946583586,0,0,0,0,0,0,0,0,0,0,0,0,0.948033361884535,0,0,0,0,0,0,0,0,0,0.100826185136841,0,0.192423683280659,0,0,0,0,0,0.772758376128762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231867835620421|short_description=p3@Tnfrsf13b}} | ||
|EntrezGene=57916 | |||
|HGNC= | |||
|MCL_coexpression_id=18 | |||
|UniProt=Q9ET35,B1ATI3,A5D8Y6 | |||
|association_with_transcript=0bp_to_ENSMUST00000010286,ENSMUST00000146033,uc007jha.1_5end | |||
|description=CAGE_peak_3_at_Tnfrsf13b_5end | |||
|id=chr11:60940249..60940264,+ | |||
|ontology_enrichment_celltype=CL:0000553!8.76e-13!6;CL:0000556!8.76e-13!6;CL:0000050!3.52e-08!9;CL:0002027!5.74e-07!3;CL:0002006!5.74e-07!3;CL:0002024!5.74e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000553,3.14e-30,6;CL:0000556,3.14e-30,6;CL:0000050,4.81e-20,9;CL:0002027,2.28e-15,3;CL:0002006,2.28e-15,3;CL:0002024,2.28e-15,3;CL:0000839,9.33e-14,13;CL:0000763,4.27e-11,16;CL:0002031,2.35e-09,25;CL:0000049,2.85e-09,19;CL:0000988,3.83e-07,32;CL:0002032,3.83e-07,32;CL:0000037,3.83e-07,32;CL:0000837,3.83e-07,32 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002465!5.49e-07!3;UBERON:0002193!5.84e-07!48;UBERON:0007023!9.06e-07!51 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.06e-15,48;UBERON:0002405,1.06e-15,48;UBERON:0002465,2.04e-15,3;UBERON:0002106,2.74e-13,6;UBERON:0004457,2.74e-13,6;UBERON:0000042,2.74e-13,6;UBERON:0004854,2.74e-13,6;UBERON:0009034,2.74e-13,6;UBERON:0002095,2.74e-13,6;UBERON:0004782,2.74e-13,6;UBERON:0003281,2.74e-13,6;UBERON:0009664,2.74e-13,6;UBERON:0002296,2.74e-13,6;UBERON:0005602,2.74e-13,6;UBERON:0001179,2.74e-13,6;UBERON:0006293,2.74e-13,6;UBERON:0002371,4.27e-11,16;UBERON:0001155,8.68e-11,2;UBERON:0000059,8.68e-11,2;UBERON:0001962,1.70e-10,2;UBERON:0001961,1.70e-10,2;UBERON:0001744,1.70e-10,2;UBERON:0002390,9.31e-10,45;UBERON:0003061,9.31e-10,45;UBERON:0003887,4.79e-08,10;UBERON:0001474,6.09e-08,22;UBERON:0004765,6.09e-08,22;UBERON:0001434,6.09e-08,22;UBERON:0004923,7.11e-07,24 | |||
|phase1_expression=0,0,0,0,0,0,0,0.774739940649458,0,0,0,0,0,0,4.99664642723494,3.44207954562704,2.09868563438444,18.9277299214943,20.7042794744666,8.48779303596061,0.0850432901510698,0,0,2.3998863419011,1.60586496747019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.2347389695219,0,0.336093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,0.91347103775248,11.9111426477699,0,0,0,0,0,0,0,0,0.722996784599558,0,0,0,0,1.86391761218122,0,0,5.36459815938042,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219550115291051,0.134206418760372,0,0,0,1.32225283331772,0,0,0,0,0,0,0,0,0,0,0.19496408711912,0.898819408654221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224862112384854,0,0,0,0,0,0.274561413188081,0,0,0,0,0,0,0.554259570499814,0,0,0,0,0,0,0,0.157635144106191,0,0.478364305972461,0.163863314715738,0.172684981865896,0.144649058581512,0,0,0.983528546038072,0.275936746304732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,1.32745138339963,0,0,0,0,0,0,0,0.356497378384721,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220528398054962,0.32977250588296,0,0,0,0,0,0,7.17657699350981,0,0,1.31857919903284,2.46049609897845,3.66045077130436,0,0.139951452323658,0,0,0,0,0,0,0,0,0,0.26175594198403,0.259229946583586,0,0,0,0,0,0,0,0,0,0,0,0,0.948033361884535,0,0,0,0,0,0,0,0,0,0.100826185136841,0,0.192423683280659,0,0,0,0,0,0.772758376128762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231867835620421 | |||
|short_description=p3@Tnfrsf13b | |||
}} |
Revision as of 20:14, 12 September 2013
Short description: | p3@Tnfrsf13b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Tnfrsf13b_5end |
Coexpression cluster: | MCL_coexpression_mm9:18 |
Association with transcript: | 0bp_to_ENSMUST00000010286, ENSMUST00000146033, uc007jha.1_5end |
EntrezGene: | Tnfrsf13b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
megakaryocyte progenitor cell | 3.14e-30 | 6 |
megakaryocyte | 3.14e-30 | 6 |
megakaryocyte-erythroid progenitor cell | 4.81e-20 | 9 |
CD9-positive, CD41-positive megakaryocyte cell | 2.28e-15 | 3 |
Kit-positive, CD34-negative megakaryocyte erythroid progenitor cell | 2.28e-15 | 3 |
Kit-positive megakaryocyte progenitor cell | 2.28e-15 | 3 |
myeloid lineage restricted progenitor cell | 9.33e-14 | 13 |
myeloid cell | 4.27e-11 | 16 |
hematopoietic lineage restricted progenitor cell | 2.35e-09 | 25 |
common myeloid progenitor | 2.85e-09 | 19 |
hematopoietic cell | 3.83e-07 | 32 |
hematopoietic oligopotent progenitor cell | 3.83e-07 | 32 |
hematopoietic stem cell | 3.83e-07 | 32 |
hematopoietic multipotent progenitor cell | 3.83e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.06e-15 | 48 |
immune system | 1.06e-15 | 48 |
lymphoid system | 2.04e-15 | 3 |
spleen | 2.74e-13 | 6 |
cavity lining | 2.74e-13 | 6 |
serous membrane | 2.74e-13 | 6 |
gastrointestinal system mesentery | 2.74e-13 | 6 |
stomach region | 2.74e-13 | 6 |
mesentery | 2.74e-13 | 6 |
gastrointestinal system serosa | 2.74e-13 | 6 |
mesentery of stomach | 2.74e-13 | 6 |
gut mesentery | 2.74e-13 | 6 |
dorsal mesentery | 2.74e-13 | 6 |
dorsal mesogastrium | 2.74e-13 | 6 |
peritoneal cavity | 2.74e-13 | 6 |
spleen primordium | 2.74e-13 | 6 |
bone marrow | 4.27e-11 | 16 |
colon | 8.68e-11 | 2 |
large intestine | 8.68e-11 | 2 |
gut-associated lymphoid tissue | 1.70e-10 | 2 |
mucosa-associated lymphoid tissue | 1.70e-10 | 2 |
lymphoid tissue | 1.70e-10 | 2 |
hematopoietic system | 9.31e-10 | 45 |
blood island | 9.31e-10 | 45 |
intraembryonic coelom | 4.79e-08 | 10 |
bone element | 6.09e-08 | 22 |
skeletal element | 6.09e-08 | 22 |
skeletal system | 6.09e-08 | 22 |
organ component layer | 7.11e-07 | 24 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.