FFCP PHASE1:Mm9::chr13:78339428..78339466,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=13865|HGNC=|MCL_coexpression_id=670|UniProt=Q32NY6|association_with_transcript=-410bp_to_ENSMUST00000091458_5end|description=CAGE_peak_2_at_Nr2f1_5end|id=chr13:78339428..78339466,-|ontology_enrichment_celltype=CL:0000221!9.29e-22!44;CL:0000133!9.29e-22!44;CL:0002319!5.57e-21!43;CL:0000055!3.74e-16!50;CL:0000540!1.95e-15!33;CL:0000047!1.95e-15!33;CL:0000031!1.95e-15!33;CL:0000404!1.95e-15!33;CL:0000117!6.63e-12!23;CL:0000337!6.63e-12!23;CL:0000393!8.74e-12!39;CL:0000211!8.74e-12!39;CL:0002321!8.52e-07!70;CL:0000220!8.52e-07!70|ontology_enrichment_celltype_v019_2=CL:0000221,5.45e-27,44;CL:0000133,5.45e-27,44;CL:0002319,5.40e-26,43;CL:0000540,7.04e-19,33;CL:0000047,7.04e-19,33;CL:0000031,7.04e-19,33;CL:0000404,7.04e-19,33;CL:0000117,2.96e-15,23;CL:0000337,2.96e-15,23;CL:0000393,5.26e-14,39;CL:0000211,5.26e-14,39;CL:0002321,1.82e-11,70;CL:0000333,6.73e-08,10;CL:0000095,6.73e-08,10;CL:0000243,6.73e-08,10;CL:0000123,6.73e-08,10;CL:0000125,6.73e-08,10;CL:0000030,6.73e-08,10;CL:0000339,6.73e-08,10;CL:0002453,5.94e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.33e-33!75;UBERON:0001016!2.33e-33!75;UBERON:0001017!2.62e-32!73;UBERON:0005743!2.62e-32!73;UBERON:0004121!6.39e-29!102;UBERON:0000924!6.39e-29!102;UBERON:0006601!6.39e-29!102;UBERON:0002346!2.98e-24!71;UBERON:0003075!2.98e-24!71;UBERON:0007284!2.98e-24!71;UBERON:0000033!1.92e-22!63;UBERON:0001049!6.39e-22!52;UBERON:0005068!6.39e-22!52;UBERON:0006241!6.39e-22!52;UBERON:0007135!6.39e-22!52;UBERON:0000955!6.92e-20!50;UBERON:0006238!6.92e-20!50;UBERON:0002616!1.99e-19!49;UBERON:0003056!2.04e-19!49;UBERON:0002020!2.15e-18!34;UBERON:0002780!7.67e-17!39;UBERON:0001890!7.67e-17!39;UBERON:0006240!7.67e-17!39;UBERON:0003080!1.13e-16!40;UBERON:0002791!2.20e-15!29;UBERON:0003528!2.20e-15!29;UBERON:0001893!2.20e-15!29;UBERON:0000956!9.20e-14!21;UBERON:0001869!9.20e-14!21;UBERON:0000203!9.20e-14!21;UBERON:0007811!3.77e-11!86;UBERON:0002619!3.84e-11!17;UBERON:0000153!1.34e-10!94;UBERON:0004111!1.81e-07!122;UBERON:0000025!3.33e-07!114;UBERON:0002021!3.45e-07!10;UBERON:0000411!3.45e-07!10;UBERON:0001950!3.45e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.76e-38,75;UBERON:0001017,3.74e-37,73;UBERON:0004121,7.18e-35,95;UBERON:0000924,7.18e-35,95;UBERON:0006601,7.18e-35,95;UBERON:0002346,3.58e-27,64;UBERON:0003075,3.58e-27,64;UBERON:0007284,3.58e-27,64;UBERON:0000073,9.93e-26,54;UBERON:0001049,6.49e-25,52;UBERON:0005068,6.49e-25,52;UBERON:0006241,6.49e-25,52;UBERON:0007135,6.49e-25,52;UBERON:0010371,4.74e-24,73;UBERON:0002020,1.24e-23,34;UBERON:0003056,2.48e-21,49;UBERON:0000955,2.68e-21,47;UBERON:0006238,2.68e-21,47;UBERON:0002616,9.96e-21,46;UBERON:0002780,5.93e-20,39;UBERON:0001890,5.93e-20,39;UBERON:0006240,5.93e-20,39;UBERON:0003528,9.54e-20,29;UBERON:0002791,9.54e-20,29;UBERON:0001893,9.54e-20,29;UBERON:0003080,4.41e-19,40;UBERON:0000956,2.98e-17,21;UBERON:0001869,2.98e-17,21;UBERON:0000203,2.98e-17,21;UBERON:0010314,4.11e-17,92;UBERON:0002619,7.01e-14,17;UBERON:0002021,8.39e-09,10;UBERON:0000411,8.39e-09,10;UBERON:0001950,8.39e-09,10|phase1_expression=12.3314612270691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.405507724878058,0.367093504323363,4.69434806608824,7.41285531693518,12.9614847813338,9.3326351555656,4.19959264876088,8.62515386189829,0,0,0,0,0,0,8.09265843438391,10.5798195854407,12.6766280701236,1.69422266034566,3.55717918444456,0,0,0,3.59520132622086,9.22123932771731,13.0648911508682,15.255671031481,11.7781978356774,8.85518051651791,8.61387309711293,9.0643191419066,12.0765293482978,17.4651569455904,1.10115880999389,2.80912143787413,2.76491759861238,16.353899678544,19.6698433745181,12.5019208933622,1.67509799400829,0,1.5279824777681,10.0173719061047,7.97281412474976,6.15118171223492,2.87759534666099,4.08086424576642,0,0,0,0,0,0,0,1.1930122580464,0.259786004602869,0.35333957451034,17.4645840523084,0,2.54805239706646,0,0,0,0,0,0.258937883647172,0.445326417194474,0.867426633830679,0.608930956624282,0.230615497256059,0.452167921657868,0.823120949949934,0.376999773989026,0,0.144599356919912,0,0,0,0,0,0.878342391034642,2.51336048176146,0,0,0,0,0.599162557619291,1.37250180845588,2.89005009859588,6.43149984711423,8.18289463457058,2.28566849015516,2.43361894601636,1.93494791315601,0,0,0.631325567659422,7.41686524887411,4.59804208866946,4.50155324513373,3.0140963567143,2.38127747029647,2.3060469651273,2.71735001223214,0.517406741478031,0.215567992932842,0.567318240503458,0.351902248327898,0.43839146485515,0.278047249225598,0.348252166522167,0.411564272815887,2.58744546864041,0,0,0,3.10688658803253,3.04883877975425,1.80062061461015,0.473489471170421,0.787056926989615,0.771335564436891,0.465067889500816,0.268273401399619,0.583826711835847,0.16455984991348,0.32833492815819,0.0810688095458557,0.292399974850665,0,0.268412837520744,1.26173969138476,14.5095503454791,0,0,1.2797295032114,0.232236671860439,0.3866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| ||
|EntrezGene=13865 | |||
|HGNC= | |||
|MCL_coexpression_id=670 | |||
|UniProt=Q32NY6 | |||
|association_with_transcript=-410bp_to_ENSMUST00000091458_5end | |||
|description=CAGE_peak_2_at_Nr2f1_5end | |||
|id=chr13:78339428..78339466,- | |||
|ontology_enrichment_celltype=CL:0000221!9.29e-22!44;CL:0000133!9.29e-22!44;CL:0002319!5.57e-21!43;CL:0000055!3.74e-16!50;CL:0000540!1.95e-15!33;CL:0000047!1.95e-15!33;CL:0000031!1.95e-15!33;CL:0000404!1.95e-15!33;CL:0000117!6.63e-12!23;CL:0000337!6.63e-12!23;CL:0000393!8.74e-12!39;CL:0000211!8.74e-12!39;CL:0002321!8.52e-07!70;CL:0000220!8.52e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.45e-27,44;CL:0000133,5.45e-27,44;CL:0002319,5.40e-26,43;CL:0000540,7.04e-19,33;CL:0000047,7.04e-19,33;CL:0000031,7.04e-19,33;CL:0000404,7.04e-19,33;CL:0000117,2.96e-15,23;CL:0000337,2.96e-15,23;CL:0000393,5.26e-14,39;CL:0000211,5.26e-14,39;CL:0002321,1.82e-11,70;CL:0000333,6.73e-08,10;CL:0000095,6.73e-08,10;CL:0000243,6.73e-08,10;CL:0000123,6.73e-08,10;CL:0000125,6.73e-08,10;CL:0000030,6.73e-08,10;CL:0000339,6.73e-08,10;CL:0002453,5.94e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.33e-33!75;UBERON:0001016!2.33e-33!75;UBERON:0001017!2.62e-32!73;UBERON:0005743!2.62e-32!73;UBERON:0004121!6.39e-29!102;UBERON:0000924!6.39e-29!102;UBERON:0006601!6.39e-29!102;UBERON:0002346!2.98e-24!71;UBERON:0003075!2.98e-24!71;UBERON:0007284!2.98e-24!71;UBERON:0000033!1.92e-22!63;UBERON:0001049!6.39e-22!52;UBERON:0005068!6.39e-22!52;UBERON:0006241!6.39e-22!52;UBERON:0007135!6.39e-22!52;UBERON:0000955!6.92e-20!50;UBERON:0006238!6.92e-20!50;UBERON:0002616!1.99e-19!49;UBERON:0003056!2.04e-19!49;UBERON:0002020!2.15e-18!34;UBERON:0002780!7.67e-17!39;UBERON:0001890!7.67e-17!39;UBERON:0006240!7.67e-17!39;UBERON:0003080!1.13e-16!40;UBERON:0002791!2.20e-15!29;UBERON:0003528!2.20e-15!29;UBERON:0001893!2.20e-15!29;UBERON:0000956!9.20e-14!21;UBERON:0001869!9.20e-14!21;UBERON:0000203!9.20e-14!21;UBERON:0007811!3.77e-11!86;UBERON:0002619!3.84e-11!17;UBERON:0000153!1.34e-10!94;UBERON:0004111!1.81e-07!122;UBERON:0000025!3.33e-07!114;UBERON:0002021!3.45e-07!10;UBERON:0000411!3.45e-07!10;UBERON:0001950!3.45e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.76e-38,75;UBERON:0001017,3.74e-37,73;UBERON:0004121,7.18e-35,95;UBERON:0000924,7.18e-35,95;UBERON:0006601,7.18e-35,95;UBERON:0002346,3.58e-27,64;UBERON:0003075,3.58e-27,64;UBERON:0007284,3.58e-27,64;UBERON:0000073,9.93e-26,54;UBERON:0001049,6.49e-25,52;UBERON:0005068,6.49e-25,52;UBERON:0006241,6.49e-25,52;UBERON:0007135,6.49e-25,52;UBERON:0010371,4.74e-24,73;UBERON:0002020,1.24e-23,34;UBERON:0003056,2.48e-21,49;UBERON:0000955,2.68e-21,47;UBERON:0006238,2.68e-21,47;UBERON:0002616,9.96e-21,46;UBERON:0002780,5.93e-20,39;UBERON:0001890,5.93e-20,39;UBERON:0006240,5.93e-20,39;UBERON:0003528,9.54e-20,29;UBERON:0002791,9.54e-20,29;UBERON:0001893,9.54e-20,29;UBERON:0003080,4.41e-19,40;UBERON:0000956,2.98e-17,21;UBERON:0001869,2.98e-17,21;UBERON:0000203,2.98e-17,21;UBERON:0010314,4.11e-17,92;UBERON:0002619,7.01e-14,17;UBERON:0002021,8.39e-09,10;UBERON:0000411,8.39e-09,10;UBERON:0001950,8.39e-09,10 | |||
|phase1_expression=12.3314612270691,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251793635951155,0.405507724878058,0.367093504323363,4.69434806608824,7.41285531693518,12.9614847813338,9.3326351555656,4.19959264876088,8.62515386189829,0,0,0,0,0,0,8.09265843438391,10.5798195854407,12.6766280701236,1.69422266034566,3.55717918444456,0,0,0,3.59520132622086,9.22123932771731,13.0648911508682,15.255671031481,11.7781978356774,8.85518051651791,8.61387309711293,9.0643191419066,12.0765293482978,17.4651569455904,1.10115880999389,2.80912143787413,2.76491759861238,16.353899678544,19.6698433745181,12.5019208933622,1.67509799400829,0,1.5279824777681,10.0173719061047,7.97281412474976,6.15118171223492,2.87759534666099,4.08086424576642,0,0,0,0,0,0,0,1.1930122580464,0.259786004602869,0.35333957451034,17.4645840523084,0,2.54805239706646,0,0,0,0,0,0.258937883647172,0.445326417194474,0.867426633830679,0.608930956624282,0.230615497256059,0.452167921657868,0.823120949949934,0.376999773989026,0,0.144599356919912,0,0,0,0,0,0.878342391034642,2.51336048176146,0,0,0,0,0.599162557619291,1.37250180845588,2.89005009859588,6.43149984711423,8.18289463457058,2.28566849015516,2.43361894601636,1.93494791315601,0,0,0.631325567659422,7.41686524887411,4.59804208866946,4.50155324513373,3.0140963567143,2.38127747029647,2.3060469651273,2.71735001223214,0.517406741478031,0.215567992932842,0.567318240503458,0.351902248327898,0.43839146485515,0.278047249225598,0.348252166522167,0.411564272815887,2.58744546864041,0,0,0,3.10688658803253,3.04883877975425,1.80062061461015,0.473489471170421,0.787056926989615,0.771335564436891,0.465067889500816,0.268273401399619,0.583826711835847,0.16455984991348,0.32833492815819,0.0810688095458557,0.292399974850665,0,0.268412837520744,1.26173969138476,14.5095503454791,0,0,1.2797295032114,0.232236671860439,0.38660238396628,0.201683524623343,0.444756087689741,0.190225626112559,0,0.164698954724011,0,0,0,0,0,0,4.36236172192088,2.28497025219458,2.25415471346161,1.22190796707189,1.55161989734101,1.05203729835478,0.442655759869801,0,0,0.123397163921801,0,0.166845105716094,0.196558995113203,0,0,0,0,0.287696137450811,0.162135226775035,0.274561413188081,0,0.372140947668503,0,0,0,0.482443521363367,0.554259570499814,3.03186258832776,0.651859905768103,0.509235257325564,0.704070744865506,0.167506257441816,0.238043640886014,0.195133647857799,0.157635144106191,0.664394068946325,0.637819074629948,0,0.518054945597687,0,0,0,0,0.275936746304732,1.76605648986571,1.87538698547525,3.27869890753351,0,0.94652465824877,1.56175497718655,1.50796378412959,4.06246956519338,4.45597348164788,3.96307143104365,3.23848561339915,2.92255857911312,5.13874111330481,3.53453448063988,0.283880170416537,1.42452482933804,0.977321756121456,0.494910368917606,0,0.242780636154981,0,0.188605079755898,0,0.307435147943927,0.258428293168221,0,0,0.316036757935816,0,0,0.680879211507576,2.70091641046965,0.905510786479282,1.28602221018955,1.77340233642274,1.60531935841864,1.31639216481697,1.522324745573,0,0,0.220528398054962,0,0,0.120625849856312,0,0,0,1.66882771809459,0,1.03193433981611,0.185194527369712,0,0,0,0,0,0,0,4.11236791655476,2.23651413839534,1.62008011232702,1.46361807210128,1.31017538247707,0.809186078308924,1.1571483801547,0.523511883968059,0,0,0,1.04661582230785,0.496375471371293,0.194451188344048,0.129159823477731,0,0,0.5208175393758,0.104859344425711,0,0,0,0.810900861160657,0.513554785824136,0.129920822977795,0.179026695667481,0,0,0,0.201932899896295,0,0,0.194915761479505,0,0,0,0,0,0,0.386379188064381,0.187682475451182,0,0.643105137237198,1.00314420807073,7.34177395402186,7.36520378411483,8.59343270159095,10.4830441229649,8.22099023724771,11.3309084608455,4.72515750162264,9.90706647093285,10.8754178156209,8.80192529978094,7.9916257639816,5.1873233542134,4.60980735536162,2.18796045361465,2.09613162627982,1.65459157605013,1.11123363900808,1.64828045791115,2.56735367673452,1.26348605881899,1.01391719956096,1.32038438970253,1.03005658216871,1.6646539625266,1.32101578597911,0.952587382566147,0.695305955669133,1.15745532278223,0.824171801606613,1.17759136107518,2.05721551431249,1.4198064492747,1.90748951957857,1.0174249164263,1.78807822789128,1.26921911837515,2.19513567447327,2.10455769150274,0.679020569229309,2.24456908663095,1.06771516311757,1.28055827088233,0.818462086339379,1.23949472948773,0.771626443924566,3.74715866906919,1.40358965067245,1.07435527024149,0.765153328275374,0.441182838239031,0.231867835620421 | |||
|short_description=p2@Nr2f1 | |||
}} |
Revision as of 01:09, 13 September 2013
Short description: | p2@Nr2f1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Nr2f1_5end |
Coexpression cluster: | MCL_coexpression_mm9:670 |
Association with transcript: | -410bp_to_ENSMUST00000091458_5end |
EntrezGene: | Nr2f1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.45e-27 | 44 |
neurectodermal cell | 5.45e-27 | 44 |
neural cell | 5.40e-26 | 43 |
neuron | 7.04e-19 | 33 |
neuronal stem cell | 7.04e-19 | 33 |
neuroblast | 7.04e-19 | 33 |
electrically signaling cell | 7.04e-19 | 33 |
CNS neuron (sensu Vertebrata) | 2.96e-15 | 23 |
neuroblast (sensu Vertebrata) | 2.96e-15 | 23 |
electrically responsive cell | 5.26e-14 | 39 |
electrically active cell | 5.26e-14 | 39 |
embryonic cell | 1.82e-11 | 70 |
migratory neural crest cell | 6.73e-08 | 10 |
neuron associated cell | 6.73e-08 | 10 |
glial cell (sensu Vertebrata) | 6.73e-08 | 10 |
neuron associated cell (sensu Vertebrata) | 6.73e-08 | 10 |
glial cell | 6.73e-08 | 10 |
glioblast | 6.73e-08 | 10 |
glioblast (sensu Vertebrata) | 6.73e-08 | 10 |
oligodendrocyte precursor cell | 5.94e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.76e-38 | 75 |
central nervous system | 3.74e-37 | 73 |
ectoderm-derived structure | 7.18e-35 | 95 |
ectoderm | 7.18e-35 | 95 |
presumptive ectoderm | 7.18e-35 | 95 |
neurectoderm | 3.58e-27 | 64 |
neural plate | 3.58e-27 | 64 |
presumptive neural plate | 3.58e-27 | 64 |
regional part of nervous system | 9.93e-26 | 54 |
neural tube | 6.49e-25 | 52 |
neural rod | 6.49e-25 | 52 |
future spinal cord | 6.49e-25 | 52 |
neural keel | 6.49e-25 | 52 |
ecto-epithelium | 4.74e-24 | 73 |
gray matter | 1.24e-23 | 34 |
pre-chordal neural plate | 2.48e-21 | 49 |
brain | 2.68e-21 | 47 |
future brain | 2.68e-21 | 47 |
regional part of brain | 9.96e-21 | 46 |
regional part of forebrain | 5.93e-20 | 39 |
forebrain | 5.93e-20 | 39 |
future forebrain | 5.93e-20 | 39 |
brain grey matter | 9.54e-20 | 29 |
regional part of telencephalon | 9.54e-20 | 29 |
telencephalon | 9.54e-20 | 29 |
anterior neural tube | 4.41e-19 | 40 |
cerebral cortex | 2.98e-17 | 21 |
cerebral hemisphere | 2.98e-17 | 21 |
pallium | 2.98e-17 | 21 |
structure with developmental contribution from neural crest | 4.11e-17 | 92 |
regional part of cerebral cortex | 7.01e-14 | 17 |
occipital lobe | 8.39e-09 | 10 |
visual cortex | 8.39e-09 | 10 |
neocortex | 8.39e-09 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.