FFCP PHASE1:Hg19::chr4:169552670..169552691,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23022|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17068|TSSclassifier=S|UniProt=D6RBH5|association_with_transcript=-74bp_to_ENST00000504519_5end|coexpression_cluster_id=C947|description=CAGE_peak_14_at_PALLD_5end|id=chr4:169552670..169552691,+|ontology_enrichment_celltype=CL:0000055!1.04e-18!180;CL:0000680!2.49e-09!57;CL:0000056!2.49e-09!57;CL:0000355!2.49e-09!57;CL:0000359!5.94e-08!32;CL:0000183!1.28e-07!59;CL:0000057!1.36e-07!75;CL:0000187!1.45e-07!54;CL:0000128!4.97e-07!7;CL:0000126!4.97e-07!7;CL:0000127!4.97e-07!7;CL:0002453!4.97e-07!7|ontology_enrichment_celltype_v019=CL:0000128;3.94e-12;7!CL:0000126;3.94e-12;7!CL:0000127;3.94e-12;7!CL:0000062;6.42e-12;9!CL:0000056;2.91e-10;4!CL:0000064;1.10e-08;3!CL:0000067;1.10e-08;3!CL:0005012;1.10e-08;3!CL:0002304;1.10e-08;3!CL:0000515;1.50e-08;3!CL:0002603;1.67e-08;3!CL:0002590;5.10e-08;3!CL:0002166;5.60e-08;3!CL:0002580;7.95e-08;3!CL:0000708;8.83e-08;3|ontology_enrichment_celltype_v019_2=CL:0000062,3.85e-12,11;CL:0000375,3.85e-12,11;CL:0000335,3.85e-12,11;CL:0000128,5.40e-12,7;CL:0000126,5.40e-12,7;CL:0000127,5.40e-12,7;CL:0002453,5.40e-12,7;CL:0000515,2.49e-10,4;CL:0000064,1.11e-08,3;CL:0000067,1.11e-08,3;CL:0005012,1.11e-08,3;CL:0002304,1.11e-08,3;CL:0002603,1.73e-08,3;CL:0002590,3.73e-08,3;CL:0002166,4.96e-08,3;CL:0000708,6.12e-08,3;CL:0002580,1.12e-07,3|ontology_enrichment_development_v019=CL:0000335;3.16e-12;11!CL:0000515;2.91e-10;4|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!1.12e-08!83;UBERON:0002329!1.12e-08!83;UBERON:0003077!1.12e-08!83;UBERON:0003059!1.12e-08!83;UBERON:0007282!1.12e-08!83;UBERON:0009618!1.12e-08!83;UBERON:0007285!1.12e-08!83;UBERON:0002385!1.37e-08!63;UBERON:0001015!1.37e-08!63;UBERON:0000383!1.37e-08!63;UBERON:0001134!1.71e-08!61;UBERON:0002036!1.71e-08!61;UBERON:0003082!1.71e-08!61;UBERON:0000486!5.77e-08!82;UBERON:0002200!2.89e-07!11;UBERON:0006876!2.89e-07!11;UBERON:0004290!9.30e-07!70|ontology_enrichment_uberon_v019=UBERON:0006876;1.43e-16;11!UBERON:0005284;5.06e-12;5!UBERON:0000488;2.16e-10;4!UBERON:0001778;1.10e-08;3!UBERON:0001775;1.10e-08;3!UBERON:0003210;8.83e-08;3!UBERON:0007625;1.84e-07;11!UBERON:0002203;6.96e-07;6!UBERON:0001768;6.96e-07;6!UBERON:0002200;6.96e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0006876,1.14e-16,11;UBERON:0005284,2.71e-12,5;UBERON:0000488,3.08e-10,4;UBERON:0001778,1.11e-08,3;UBERON:0001775,1.11e-08,3;UBERON:0003210,6.12e-08,3;UBERON:0007625,2.17e-07,11;UBERON:0002203,8.73e-07,6;UBERON:0001768,8.73e-07,6;UBERON:0002200,8.73e-07,6|phase1_expression=1.2717486548939,1.49870366723688,0.563817616383885,1.0007329835313,0.446961094427288,0,0,0,0,4.17747692052565,1.39560233594486,0.218441372130172,1.58260186937072,0,0.331397375727916,0.672325146451775,0,0.730310090387373,0.975865597581014,4.67860020691794,5.50801866359483,8.14982275843028,0.286235987131057,2.05311637609326,2.76193807108566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.289693037921647,0,0,5.57755421268,8.64744650103999,12.0333656399583,0.392937226493138,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22452937262617,0,0,0,0,0,0,0.436094052142534,2.98183171017191,6.58478660655815,3.70745706277013,0.286836620748814,1.41867352879343,0.560677600142307,7.47242970107935,7.4000264525148,0,0.269421344139376,0.326923806226917,6.50836938873205,1.72852777344,0,0,0,0,0,0,0,0,0,0,1.18800285728205,0.494533858557114,0,0,0,0,0,0.438977620880838,1.83892677479412,0.600952235626387,0.453728732640084,0.358779271377724,0.640672166455702,0.211931901159562,0,0,0.772921620136887,0.18611685633159,0,0.194874010322397,0.252433774244115,0.276149695926898,0.323292113637624,0.355009592516614,0,0.169560592310488,0.386521706326594,2.45471508531751,0,0,0,0,0.10366105501537,0,0,0,2.57296375277154,0,0,0,0.828147600278907,1.68584690078102,1.20505514941741,0.661763836394364,0.435758888184812,0.237270619111097,1.07865046528132,0.784885860501384,0,0,0,0.8231480226628,0,0,0,0,0,0,1.02940686179115,0.329250856225877,0,0,0.0925884451585296,0,0,1.44331342025273,0,7.0445216541493,0.144366447761074,0,0,0,0,0,0,0,2.81201501960331,4.70349958956807,2.55195175036296,0,0,0,0,0,0.414656231081544,0.576479813667846,1.00993946741104,0,0,0,0,0,0,0,4.14885012077835,1.74384027533312,3.74025257686845,0.387815147273333,0,0,0.26593811658487,0,0,0,0,0,0,0.823240336780769,0,0,0,0.301439377059586,0,0,0,0,0,8.14724508671381,3.44585807502342,1.42636905040718,14.4781306667579,2.87666851570537,19.6967059563885,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.24538298343828,1.00034104211935,0.271265023699736,0,1.42743191037729,0.315404830067869,0.468565659970853,2.70851489754947,2.27407504055985,2.0694614258501,2.65690239414175,1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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23022 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17068 | |||
|TSSclassifier=S | |||
|UniProt=D6RBH5 | |||
|association_with_transcript=-74bp_to_ENST00000504519_5end | |||
|coexpression_cluster_id=C947 | |||
|description=CAGE_peak_14_at_PALLD_5end | |||
|id=chr4:169552670..169552691,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.04e-18!180;CL:0000680!2.49e-09!57;CL:0000056!2.49e-09!57;CL:0000355!2.49e-09!57;CL:0000359!5.94e-08!32;CL:0000183!1.28e-07!59;CL:0000057!1.36e-07!75;CL:0000187!1.45e-07!54;CL:0000128!4.97e-07!7;CL:0000126!4.97e-07!7;CL:0000127!4.97e-07!7;CL:0002453!4.97e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0000128;3.94e-12;7!CL:0000126;3.94e-12;7!CL:0000127;3.94e-12;7!CL:0000062;6.42e-12;9!CL:0000056;2.91e-10;4!CL:0000064;1.10e-08;3!CL:0000067;1.10e-08;3!CL:0005012;1.10e-08;3!CL:0002304;1.10e-08;3!CL:0000515;1.50e-08;3!CL:0002603;1.67e-08;3!CL:0002590;5.10e-08;3!CL:0002166;5.60e-08;3!CL:0002580;7.95e-08;3!CL:0000708;8.83e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000062,3.85e-12,11;CL:0000375,3.85e-12,11;CL:0000335,3.85e-12,11;CL:0000128,5.40e-12,7;CL:0000126,5.40e-12,7;CL:0000127,5.40e-12,7;CL:0002453,5.40e-12,7;CL:0000515,2.49e-10,4;CL:0000064,1.11e-08,3;CL:0000067,1.11e-08,3;CL:0005012,1.11e-08,3;CL:0002304,1.11e-08,3;CL:0002603,1.73e-08,3;CL:0002590,3.73e-08,3;CL:0002166,4.96e-08,3;CL:0000708,6.12e-08,3;CL:0002580,1.12e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000335;3.16e-12;11!CL:0000515;2.91e-10;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.12e-08!83;UBERON:0002329!1.12e-08!83;UBERON:0003077!1.12e-08!83;UBERON:0003059!1.12e-08!83;UBERON:0007282!1.12e-08!83;UBERON:0009618!1.12e-08!83;UBERON:0007285!1.12e-08!83;UBERON:0002385!1.37e-08!63;UBERON:0001015!1.37e-08!63;UBERON:0000383!1.37e-08!63;UBERON:0001134!1.71e-08!61;UBERON:0002036!1.71e-08!61;UBERON:0003082!1.71e-08!61;UBERON:0000486!5.77e-08!82;UBERON:0002200!2.89e-07!11;UBERON:0006876!2.89e-07!11;UBERON:0004290!9.30e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0006876;1.43e-16;11!UBERON:0005284;5.06e-12;5!UBERON:0000488;2.16e-10;4!UBERON:0001778;1.10e-08;3!UBERON:0001775;1.10e-08;3!UBERON:0003210;8.83e-08;3!UBERON:0007625;1.84e-07;11!UBERON:0002203;6.96e-07;6!UBERON:0001768;6.96e-07;6!UBERON:0002200;6.96e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006876,1.14e-16,11;UBERON:0005284,2.71e-12,5;UBERON:0000488,3.08e-10,4;UBERON:0001778,1.11e-08,3;UBERON:0001775,1.11e-08,3;UBERON:0003210,6.12e-08,3;UBERON:0007625,2.17e-07,11;UBERON:0002203,8.73e-07,6;UBERON:0001768,8.73e-07,6;UBERON:0002200,8.73e-07,6 | |||
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| |||
|short_description=p14@PALLD | |||
}} |
Revision as of 03:18, 13 September 2013
Short description: | p14@PALLD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_14_at_PALLD_5end |
Coexpression cluster: | C947_bone_Myoblast_mesenchymal_uterus_Preadipocyte_Ciliary_Astrocyte |
Association with transcript: | -74bp_to_ENST00000504519_5end |
EntrezGene: | PALLD |
HGNC: | 17068 |
UniProt: | D6RBH5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
osteoblast | 3.85e-12 | 11 |
osteoprogenitor cell | 3.85e-12 | 11 |
mesenchyme condensation cell | 3.85e-12 | 11 |
oligodendrocyte | 5.40e-12 | 7 |
macroglial cell | 5.40e-12 | 7 |
astrocyte | 5.40e-12 | 7 |
oligodendrocyte precursor cell | 5.40e-12 | 7 |
skeletal muscle myoblast | 2.49e-10 | 4 |
ciliated cell | 1.11e-08 | 3 |
ciliated epithelial cell | 1.11e-08 | 3 |
multi-ciliated epithelial cell | 1.11e-08 | 3 |
non-pigmented ciliary epithelial cell | 1.11e-08 | 3 |
astrocyte of the cerebellum | 1.73e-08 | 3 |
smooth muscle cell of the brain vasculature | 3.73e-08 | 3 |
epithelial cell of Malassez | 4.96e-08 | 3 |
leptomeningeal cell | 6.12e-08 | 3 |
preadipocyte of the breast | 1.12e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
vasculature of organ | 1.14e-16 | 11 |
brain vasculature | 2.71e-12 | 5 |
atypical epithelium | 3.08e-10 | 4 |
ciliary epithelium | 1.11e-08 | 3 |
ciliary body | 1.11e-08 | 3 |
blood-cerebrospinal fluid barrier | 6.12e-08 | 3 |
pigment epithelium of eye | 2.17e-07 | 11 |
vasculature of eye | 8.73e-07 | 6 |
uvea | 8.73e-07 | 6 |
vasculature of head | 8.73e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.