FFCP PHASE1:Mm9::chr15:99556129..99556143,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=66379|HGNC=|MCL_coexpression_id=347|UniProt=Q8BH51|association_with_transcript=80bp_to_ENSMUST00000023761,NM_183256,uc007xqe.2_5end|description=CAGE_peak_5_at_2310016M24Rik_5end|id=chr15:99556129..99556143,+|ontology_enrichment_celltype=CL:0000055!1.72e-14!50;CL:0002321!6.84e-14!70;CL:0000220!6.84e-14!70;CL:0002319!1.74e-13!43;CL:0000221!1.93e-13!44;CL:0000133!1.93e-13!44;CL:0000117!1.68e-10!23;CL:0000337!1.68e-10!23;CL:0000393!1.68e-10!39;CL:0000211!1.68e-10!39;CL:0000540!8.57e-10!33;CL:0000047!8.57e-10!33;CL:0000031!8.57e-10!33;CL:0000404!8.57e-10!33;CL:0000548!3.57e-07!115;CL:0000004!3.57e-07!115;CL:0000255!3.57e-07!115|ontology_enrichment_celltype_v019_2=CL:0002321,3.74e-14,70;CL:0002319,1.52e-13,43;CL:0000221,1.69e-13,44;CL:0000133,1.69e-13,44;CL:0000117,1.52e-10,23;CL:0000337,1.52e-10,23;CL:0000393,1.52e-10,39;CL:0000211,1.52e-10,39;CL:0000540,7.83e-10,33;CL:0000047,7.83e-10,33;CL:0000031,7.83e-10,33;CL:0000404,7.83e-10,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.72e-19!73;UBERON:0005743!4.72e-19!73;UBERON:0000073!4.89e-19!75;UBERON:0001016!4.89e-19!75;UBERON:0004121!7.17e-17!102;UBERON:0000924!7.17e-17!102;UBERON:0006601!7.17e-17!102;UBERON:0002346!6.86e-16!71;UBERON:0003075!6.86e-16!71;UBERON:0007284!6.86e-16!71;UBERON:0001049!1.91e-14!52;UBERON:0005068!1.91e-14!52;UBERON:0006241!1.91e-14!52;UBERON:0007135!1.91e-14!52;UBERON:0000955!2.53e-13!50;UBERON:0006238!2.53e-13!50;UBERON:0002616!2.76e-13!49;UBERON:0002020!3.89e-13!34;UBERON:0000033!6.37e-11!63;UBERON:0002791!1.23e-10!29;UBERON:0003528!1.23e-10!29;UBERON:0001893!1.23e-10!29;UBERON:0003080!3.60e-09!40;UBERON:0002780!4.39e-09!39;UBERON:0001890!4.39e-09!39;UBERON:0006240!4.39e-09!39;UBERON:0000956!2.01e-08!21;UBERON:0001869!2.01e-08!21;UBERON:0000203!2.01e-08!21;UBERON:0002619!1.20e-07!17;UBERON:0003056!2.43e-07!49;UBERON:0000025!6.70e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.13e-21,92;UBERON:0001017,3.89e-19,73;UBERON:0001016,4.03e-19,75;UBERON:0000073,7.04e-16,54;UBERON:0001049,1.66e-14,52;UBERON:0005068,1.66e-14,52;UBERON:0006241,1.66e-14,52;UBERON:0007135,1.66e-14,52;UBERON:0004121,1.67e-13,95;UBERON:0000924,1.67e-13,95;UBERON:0006601,1.67e-13,95;UBERON:0002020,3.42e-13,34;UBERON:0002346,9.05e-13,64;UBERON:0003075,9.05e-13,64;UBERON:0007284,9.05e-13,64;UBERON:0000955,9.06e-12,47;UBERON:0006238,9.06e-12,47;UBERON:0002616,9.99e-12,46;UBERON:0003528,1.12e-10,29;UBERON:0002791,1.12e-10,29;UBERON:0001893,1.12e-10,29;UBERON:0010371,3.54e-10,73;UBERON:0003080,3.31e-09,40;UBERON:0002780,4.04e-09,39;UBERON:0001890,4.04e-09,39;UBERON:0006240,4.04e-09,39;UBERON:0000956,1.86e-08,21;UBERON:0001869,1.86e-08,21;UBERON:0000203,1.86e-08,21;UBERON:0002619,1.12e-07,17;UBERON:0003056,2.08e-07,49;UBERON:0000025,8.70e-07,114|phase1_expression=2.7225304007815,4.53668029931169,4.09499315450582,1.81478526784098,3.00537437967808,2.35030980676646,2.56973904655078,0.903863264091034,2.25261955442667,1.63845168425395,1.54096171402954,1.59544317990673,1.36960583944965,1.39872643870396,0.333109761815663,1.01237633694913,0.699561878128147,1.89277299214943,0.548457734422955,0.42438965179803,3.40173160604279,1.78723712161594,6.00759515019551,2.71987118748791,3.21172993494038,4.01962374880514,5.1691439539089,4.30942465371778,3.6104449696711,5.54466285471848,4.6563407237614,1.27006134691926,0.61506478758457,0,4.04392267651784,5.48574329683025,4.08338712524738,1.67412652294763,0.7813353445238,0.523523743973798,0,0,0.485510353031154,3.39921408534059,3.95370031756107,6.05704282133549,14.0830441982647,13.0815093828268,13.1811709640683,13.026803237977,4.19959264876088,2.87505128729943,0.503347818173209,0,0.336093799142464,2.05807548828758,3.15186783932632,4.64104883049698,7.48570905180512,4.7609188134483,5.70448263155561,5.42151251310611,4.4464739805557,2.2497492932035,3.9554654502679,1.4209602298922,6.5912024314049,12.2949857702897,4.97710139080693,3.91517221161903,3.57552434297349,10.5690864229407,7.50953039235486,4.28717797252339,4.40889166683887,5.51531271966013,11.0115880999389,9.3211756802187,5.68344173048101,4.74790635828698,4.39140689291566,4.16730696445408,12.8424179540635,8.4414391504752,6.87592114995646,5.59794312399969,5.41012387036591,6.15118171223492,3.02904773332736,2.72057616384428,0.579728977403356,4.30211938490693,0,2.69851595818909,3.24888208723835,1.79210754838934,3.23022166303029,4.09032774187339,7.53379413348319,8.48014978824817,2.95771181531029,5.13305909657271,0,7.11066703153331,4.32982082022428,4.30711771307668,7.07734223020697,2.96878087269556,0.517875767294343,5.49235914539852,4.3371331691534,7.61163695780353,9.4552353874984,10.2491395575783,4.46837087115678,7.1629957057915,0.494389935468748,3.61498392299779,0,4.36770494858005,1.76673214768315,0.969750506270444,0,4.09893115816166,5.23616767033638,0.766371165625774,2.27648736561249,5.39912457894067,1.65191295194984,3.44518470631092,4.57500602818627,1.7591609295801,4.51943232499919,6.90431734791892,3.9479728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| ||
|EntrezGene=66379 | |||
|HGNC= | |||
|MCL_coexpression_id=347 | |||
|UniProt=Q8BH51 | |||
|association_with_transcript=80bp_to_ENSMUST00000023761,NM_183256,uc007xqe.2_5end | |||
|description=CAGE_peak_5_at_2310016M24Rik_5end | |||
|id=chr15:99556129..99556143,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.72e-14!50;CL:0002321!6.84e-14!70;CL:0000220!6.84e-14!70;CL:0002319!1.74e-13!43;CL:0000221!1.93e-13!44;CL:0000133!1.93e-13!44;CL:0000117!1.68e-10!23;CL:0000337!1.68e-10!23;CL:0000393!1.68e-10!39;CL:0000211!1.68e-10!39;CL:0000540!8.57e-10!33;CL:0000047!8.57e-10!33;CL:0000031!8.57e-10!33;CL:0000404!8.57e-10!33;CL:0000548!3.57e-07!115;CL:0000004!3.57e-07!115;CL:0000255!3.57e-07!115 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.74e-14,70;CL:0002319,1.52e-13,43;CL:0000221,1.69e-13,44;CL:0000133,1.69e-13,44;CL:0000117,1.52e-10,23;CL:0000337,1.52e-10,23;CL:0000393,1.52e-10,39;CL:0000211,1.52e-10,39;CL:0000540,7.83e-10,33;CL:0000047,7.83e-10,33;CL:0000031,7.83e-10,33;CL:0000404,7.83e-10,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.72e-19!73;UBERON:0005743!4.72e-19!73;UBERON:0000073!4.89e-19!75;UBERON:0001016!4.89e-19!75;UBERON:0004121!7.17e-17!102;UBERON:0000924!7.17e-17!102;UBERON:0006601!7.17e-17!102;UBERON:0002346!6.86e-16!71;UBERON:0003075!6.86e-16!71;UBERON:0007284!6.86e-16!71;UBERON:0001049!1.91e-14!52;UBERON:0005068!1.91e-14!52;UBERON:0006241!1.91e-14!52;UBERON:0007135!1.91e-14!52;UBERON:0000955!2.53e-13!50;UBERON:0006238!2.53e-13!50;UBERON:0002616!2.76e-13!49;UBERON:0002020!3.89e-13!34;UBERON:0000033!6.37e-11!63;UBERON:0002791!1.23e-10!29;UBERON:0003528!1.23e-10!29;UBERON:0001893!1.23e-10!29;UBERON:0003080!3.60e-09!40;UBERON:0002780!4.39e-09!39;UBERON:0001890!4.39e-09!39;UBERON:0006240!4.39e-09!39;UBERON:0000956!2.01e-08!21;UBERON:0001869!2.01e-08!21;UBERON:0000203!2.01e-08!21;UBERON:0002619!1.20e-07!17;UBERON:0003056!2.43e-07!49;UBERON:0000025!6.70e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.13e-21,92;UBERON:0001017,3.89e-19,73;UBERON:0001016,4.03e-19,75;UBERON:0000073,7.04e-16,54;UBERON:0001049,1.66e-14,52;UBERON:0005068,1.66e-14,52;UBERON:0006241,1.66e-14,52;UBERON:0007135,1.66e-14,52;UBERON:0004121,1.67e-13,95;UBERON:0000924,1.67e-13,95;UBERON:0006601,1.67e-13,95;UBERON:0002020,3.42e-13,34;UBERON:0002346,9.05e-13,64;UBERON:0003075,9.05e-13,64;UBERON:0007284,9.05e-13,64;UBERON:0000955,9.06e-12,47;UBERON:0006238,9.06e-12,47;UBERON:0002616,9.99e-12,46;UBERON:0003528,1.12e-10,29;UBERON:0002791,1.12e-10,29;UBERON:0001893,1.12e-10,29;UBERON:0010371,3.54e-10,73;UBERON:0003080,3.31e-09,40;UBERON:0002780,4.04e-09,39;UBERON:0001890,4.04e-09,39;UBERON:0006240,4.04e-09,39;UBERON:0000956,1.86e-08,21;UBERON:0001869,1.86e-08,21;UBERON:0000203,1.86e-08,21;UBERON:0002619,1.12e-07,17;UBERON:0003056,2.08e-07,49;UBERON:0000025,8.70e-07,114 | |||
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| |||
|short_description=p5@2310016M24Rik | |||
}} |
Revision as of 11:54, 13 September 2013
Short description: | p5@2310016M24Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_2310016M24Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:347 |
Association with transcript: | 80bp_to_ENSMUST00000023761, NM_183256, uc007xqe.2_5end |
EntrezGene: | 2310016M24Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.74e-14 | 70 |
neural cell | 1.52e-13 | 43 |
ectodermal cell | 1.69e-13 | 44 |
neurectodermal cell | 1.69e-13 | 44 |
CNS neuron (sensu Vertebrata) | 1.52e-10 | 23 |
neuroblast (sensu Vertebrata) | 1.52e-10 | 23 |
electrically responsive cell | 1.52e-10 | 39 |
electrically active cell | 1.52e-10 | 39 |
neuron | 7.83e-10 | 33 |
neuronal stem cell | 7.83e-10 | 33 |
neuroblast | 7.83e-10 | 33 |
electrically signaling cell | 7.83e-10 | 33 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.13e-21 | 92 |
central nervous system | 3.89e-19 | 73 |
nervous system | 4.03e-19 | 75 |
regional part of nervous system | 7.04e-16 | 54 |
neural tube | 1.66e-14 | 52 |
neural rod | 1.66e-14 | 52 |
future spinal cord | 1.66e-14 | 52 |
neural keel | 1.66e-14 | 52 |
ectoderm-derived structure | 1.67e-13 | 95 |
ectoderm | 1.67e-13 | 95 |
presumptive ectoderm | 1.67e-13 | 95 |
gray matter | 3.42e-13 | 34 |
neurectoderm | 9.05e-13 | 64 |
neural plate | 9.05e-13 | 64 |
presumptive neural plate | 9.05e-13 | 64 |
brain | 9.06e-12 | 47 |
future brain | 9.06e-12 | 47 |
regional part of brain | 9.99e-12 | 46 |
brain grey matter | 1.12e-10 | 29 |
regional part of telencephalon | 1.12e-10 | 29 |
telencephalon | 1.12e-10 | 29 |
ecto-epithelium | 3.54e-10 | 73 |
anterior neural tube | 3.31e-09 | 40 |
regional part of forebrain | 4.04e-09 | 39 |
forebrain | 4.04e-09 | 39 |
future forebrain | 4.04e-09 | 39 |
cerebral cortex | 1.86e-08 | 21 |
cerebral hemisphere | 1.86e-08 | 21 |
pallium | 1.86e-08 | 21 |
regional part of cerebral cortex | 1.12e-07 | 17 |
pre-chordal neural plate | 2.08e-07 | 49 |
tube | 8.70e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.