FFCP PHASE1:Hg19::chr5:82818036..82818054,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1462|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=2464|TSSclassifier=N|UniProt=B7Z3R6|association_with_transcript=416bp_to_AK296285_5end|coexpression_cluster_id=C456|description=CAGE_peak_14_at_VCAN_5end|id=chr5:82818036..82818054,+|ontology_enrichment_celltype=CL:0002057!8.37e-24!42;CL:0000860!3.79e-21!45;CL:0000034!1.03e-13!444;CL:0000048!1.17e-12!430;CL:0000723!1.47e-12!436;CL:0002194!7.04e-12!63;CL:0000576!7.04e-12!63;CL:0000040!7.04e-12!63;CL:0000559!7.04e-12!63;CL:0002009!4.22e-11!65;CL:0000055!6.49e-11!180;CL:0000839!2.19e-09!70;CL:0000557!4.44e-09!71;CL:0002334!1.81e-08!12;CL:0000393!2.31e-08!60;CL:0000211!2.31e-08!60;CL:0000766!3.88e-08!76;CL:0000057!1.40e-07!75;CL:0000187!7.75e-07!54|ontology_enrichment_celltype_v019=CL:0000860;3.32e-21;33!CL:0002057;3.32e-21;33!CL:0000473;1.65e-15;39!CL:0000234;1.65e-15;39!CL:0000576;3.79e-11;48!CL:1000306;1.08e-10;4!CL:0002547;1.08e-10;4!CL:0002334;8.82e-10;12|ontology_enrichment_celltype_v019_2=CL:0000860,6.45e-21,42;CL:0002057,6.45e-21,42;CL:0000473,1.41e-17,48;CL:0000234,1.41e-17,48;CL:0002194,6.14e-13,59;CL:0000576,6.14e-13,59;CL:0000040,6.14e-13,59;CL:0000559,6.14e-13,59;CL:0002009,2.41e-12,61;CL:0000839,5.08e-11,66;CL:1000306,7.51e-11,4;CL:0002547,7.51e-11,4;CL:0000557,8.83e-11,67;CL:0002334,7.02e-10,12;CL:0000034,1.05e-09,441;CL:0000766,1.11e-09,72;CL:0000048,2.15e-09,427;CL:0000723,4.71e-09,433;CL:0002320,2.16e-08,361;CL:0000134,2.74e-08,354;CL:0000219,2.15e-07,386;CL:0000057,2.22e-07,76|ontology_enrichment_development_v019=CL:0002057;1.60e-16;42|ontology_enrichment_disease=DOID:2394!1.86e-09!14|ontology_enrichment_disease_v019=DOID:2394;9.12e-13;14|ontology_enrichment_disease_v019_2=DOID:2394,1.22e-12,14|ontology_enrichment_uberon=UBERON:0002204!5.87e-12!167;UBERON:0002371!2.92e-08!80;UBERON:0001474!2.13e-07!86|ontology_enrichment_uberon_v019=UBERON:0004797;1.08e-10;4!UBERON:0000415;1.08e-10;4!UBERON:0007240;1.08e-10;4!UBERON:0005742;1.08e-10;4!UBERON:0005734;1.08e-10;4!UBERON:0004664;1.08e-10;4!UBERON:0004663;1.08e-10;4!UBERON:0000947;9.54e-07;21!UBERON:0010191;9.54e-07;21|ontology_enrichment_uberon_v019_2=UBERON:0000415,7.51e-11,4;UBERON:0007240,7.51e-11,4;UBERON:0005742,7.51e-11,4;UBERON:0005734,7.51e-11,4;UBERON:0004664,7.51e-11,4;UBERON:0004663,7.51e-11,4;UBERON:0002371,6.52e-09,76;UBERON:0002384,2.30e-08,371;UBERON:0001474,6.64e-08,82;UBERON:0004765,1.50e-07,90;UBERON:0000926,2.56e-07,315;UBERON:0004120,2.56e-07,315;UBERON:0006603,2.56e-07,315;UBERON:0000947,8.56e-07,21;UBERON:0010191,8.56e-07,21|phase1_expression=0.181678379270557,1.07050261945492,0.281908808191942,1.0007329835313,0.446961094427288,5.23403114460221,0,0,0,0,0,0,0,0.123766352960047,0,0,3.61616716814386,2.19093027116212,0.975865597581014,0,0,0,0.286235987131057,0.821246550437305,0.627713197974014,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0.553995408531877,1.40381113229099,1.08505435357926,0,0,0,2.32637182047304,0.755751887377619,0.242584061187816,2.55671940596253,2.46700732813095,0.309706370895104,1.43846196161075,0.768482119587302,0.945928919554341,2.06847408441971,1.29096936716765,1.35426486594342,2.25890807451126,0.545812300115692,0,1.53041946185451,0.320929027076094,1.27867425159808,0.989553900560148,1.59570926097305,0.426224750532694,5.22376629531451,1.13477044938228,1.24564449799115,2.00998932205395,3.65038042894141,0.65156653411535,2.42159801053347,0.368277635987565,0.316462387440884,0.633765858935825,0.212604299965044,0.838634582033504,1.79725809834392,0.901061357049038,1.12507910687956,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,1.34140171940727,0,0.722878304769133,0,0.434539556882471,0,0,0.661743720148475,1.99556457716308,1.22968699970376,0,0,0,0,0,0.132957960518865,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.49091585508596,1.2663051166458,1.98613771219828,6.3104056564739,2.12801029319014,0,0,0.74000264525148,0,0.404132016209064,0.653847612453835,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0,0,0.989067717114227,0,0,0,0,0,0,0,0.300476117813194,0.340296549480063,2.33206526395521,1.2813443329114,0.211931901159562,1.20036438433761,0.206105058476878,0.772921620136887,0,2.19409231913646,0.68205903612839,1.51460264546469,0.0920498986422993,0.161646056818812,1.77504796258307,0.503760491138201,0,0,0,0,0.609868530647977,0.132529768321485,1.04574548582567,1.0366105501537,0.756962552626885,0.36497735907583,0,3.21620469096443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.514703430895577,0,0,0,0.0925884451585296,0,0,0,0,0.821860859650752,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.517086863031111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0.479249710983165,0,0,0.289562613335158,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0.637938751653163,0,0,0,0,1.00034104211935,0,1.03985430765404,1.24900292158013,0.157702415033935,0.234282829985426,0,0,0,0.6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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1462 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=2464 | |||
|TSSclassifier=N | |||
|UniProt=B7Z3R6 | |||
|association_with_transcript=416bp_to_AK296285_5end | |||
|coexpression_cluster_id=C456 | |||
|description=CAGE_peak_14_at_VCAN_5end | |||
|id=chr5:82818036..82818054,+ | |||
|ontology_enrichment_celltype=CL:0002057!8.37e-24!42;CL:0000860!3.79e-21!45;CL:0000034!1.03e-13!444;CL:0000048!1.17e-12!430;CL:0000723!1.47e-12!436;CL:0002194!7.04e-12!63;CL:0000576!7.04e-12!63;CL:0000040!7.04e-12!63;CL:0000559!7.04e-12!63;CL:0002009!4.22e-11!65;CL:0000055!6.49e-11!180;CL:0000839!2.19e-09!70;CL:0000557!4.44e-09!71;CL:0002334!1.81e-08!12;CL:0000393!2.31e-08!60;CL:0000211!2.31e-08!60;CL:0000766!3.88e-08!76;CL:0000057!1.40e-07!75;CL:0000187!7.75e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.32e-21;33!CL:0002057;3.32e-21;33!CL:0000473;1.65e-15;39!CL:0000234;1.65e-15;39!CL:0000576;3.79e-11;48!CL:1000306;1.08e-10;4!CL:0002547;1.08e-10;4!CL:0002334;8.82e-10;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.45e-21,42;CL:0002057,6.45e-21,42;CL:0000473,1.41e-17,48;CL:0000234,1.41e-17,48;CL:0002194,6.14e-13,59;CL:0000576,6.14e-13,59;CL:0000040,6.14e-13,59;CL:0000559,6.14e-13,59;CL:0002009,2.41e-12,61;CL:0000839,5.08e-11,66;CL:1000306,7.51e-11,4;CL:0002547,7.51e-11,4;CL:0000557,8.83e-11,67;CL:0002334,7.02e-10,12;CL:0000034,1.05e-09,441;CL:0000766,1.11e-09,72;CL:0000048,2.15e-09,427;CL:0000723,4.71e-09,433;CL:0002320,2.16e-08,361;CL:0000134,2.74e-08,354;CL:0000219,2.15e-07,386;CL:0000057,2.22e-07,76 | |||
|ontology_enrichment_development_v019=CL:0002057;1.60e-16;42 | |||
|ontology_enrichment_disease=DOID:2394!1.86e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;9.12e-13;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.22e-12,14 | |||
|ontology_enrichment_uberon=UBERON:0002204!5.87e-12!167;UBERON:0002371!2.92e-08!80;UBERON:0001474!2.13e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0004797;1.08e-10;4!UBERON:0000415;1.08e-10;4!UBERON:0007240;1.08e-10;4!UBERON:0005742;1.08e-10;4!UBERON:0005734;1.08e-10;4!UBERON:0004664;1.08e-10;4!UBERON:0004663;1.08e-10;4!UBERON:0000947;9.54e-07;21!UBERON:0010191;9.54e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000415,7.51e-11,4;UBERON:0007240,7.51e-11,4;UBERON:0005742,7.51e-11,4;UBERON:0005734,7.51e-11,4;UBERON:0004664,7.51e-11,4;UBERON:0004663,7.51e-11,4;UBERON:0002371,6.52e-09,76;UBERON:0002384,2.30e-08,371;UBERON:0001474,6.64e-08,82;UBERON:0004765,1.50e-07,90;UBERON:0000926,2.56e-07,315;UBERON:0004120,2.56e-07,315;UBERON:0006603,2.56e-07,315;UBERON:0000947,8.56e-07,21;UBERON:0010191,8.56e-07,21 | |||
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| |||
|short_description=p14@VCAN | |||
}} |
Revision as of 16:42, 13 September 2013
Short description: | p14@VCAN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_14_at_VCAN_5end |
Coexpression cluster: | C456_Fibroblast_Smooth_CD14_Preadipocyte_Lens_mesenchymal_serous |
Association with transcript: | 416bp_to_AK296285_5end |
EntrezGene: | VCAN |
HGNC: | 2464 |
UniProt: | B7Z3R6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.45e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.45e-21 | 42 |
defensive cell | 1.41e-17 | 48 |
phagocyte | 1.41e-17 | 48 |
monopoietic cell | 6.14e-13 | 59 |
monocyte | 6.14e-13 | 59 |
monoblast | 6.14e-13 | 59 |
promonocyte | 6.14e-13 | 59 |
macrophage dendritic cell progenitor | 2.41e-12 | 61 |
myeloid lineage restricted progenitor cell | 5.08e-11 | 66 |
fibroblast of tunica adventitia of artery | 7.51e-11 | 4 |
fibroblast of the aortic adventitia | 7.51e-11 | 4 |
granulocyte monocyte progenitor cell | 8.83e-11 | 67 |
preadipocyte | 7.02e-10 | 12 |
stem cell | 1.05e-09 | 441 |
myeloid leukocyte | 1.11e-09 | 72 |
multi fate stem cell | 2.15e-09 | 427 |
somatic stem cell | 4.71e-09 | 433 |
connective tissue cell | 2.16e-08 | 361 |
mesenchymal cell | 2.74e-08 | 354 |
motile cell | 2.15e-07 | 386 |
fibroblast | 2.22e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
artery wall | 7.51e-11 | 4 |
tunica adventitia of artery | 7.51e-11 | 4 |
adventitia | 7.51e-11 | 4 |
tunica adventitia of blood vessel | 7.51e-11 | 4 |
aorta tunica adventitia | 7.51e-11 | 4 |
aorta wall | 7.51e-11 | 4 |
bone marrow | 6.52e-09 | 76 |
connective tissue | 2.30e-08 | 371 |
bone element | 6.64e-08 | 82 |
skeletal element | 1.50e-07 | 90 |
mesoderm | 2.56e-07 | 315 |
mesoderm-derived structure | 2.56e-07 | 315 |
presumptive mesoderm | 2.56e-07 | 315 |
aorta | 8.56e-07 | 21 |
aortic system | 8.56e-07 | 21 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.22e-12 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.