FFCP PHASE1:Mm9::chr1:179674769..179674774,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=58|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:179674769..179674774,-|id=chr1:179674769..179674774,-|ontology_enrichment_celltype=CL:0000066!4.88e-19!25;CL:0002076!1.10e-17!15;CL:0002563!2.53e-16!9;CL:0002251!2.53e-16!9;CL:0000223!3.54e-15!20;CL:0000239!5.79e-15!6;CL:0000677!5.79e-15!6;CL:0000212!5.79e-15!6;CL:0000584!5.79e-15!6;CL:0000075!1.06e-12!7;CL:0000473!1.72e-08!3;CL:0000627!1.72e-08!3;CL:0000682!1.72e-08!3;CL:0000068!5.06e-08!3;CL:0002202!5.06e-08!3;CL:0000069!5.06e-08!3;CL:0002632!5.06e-08!3;CL:0002368!5.06e-08!3;CL:0000307!5.06e-08!3;CL:0000377!5.06e-08!3|ontology_enrichment_celltype_v019_2=CL:0000066,5.39e-36,25;CL:0000239,2.92e-33,6;CL:0000677,2.92e-33,6;CL:0000584,2.92e-33,6;CL:0002076,8.06e-29,15;CL:0000075,1.76e-28,7;CL:0000223,2.43e-26,20;CL:0002563,4.25e-22,9;CL:0002251,4.25e-22,9;CL:0000682,6.33e-18,3;CL:0000068,8.11e-17,3;CL:0002202,8.11e-17,3;CL:0000069,8.11e-17,3;CL:0002632,8.11e-17,3;CL:0002368,8.11e-17,3;CL:0000307,8.11e-17,3;CL:0000377,8.11e-17,3;CL:0000473,5.51e-08,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!1.02e-24!15;UBERON:0001242!2.41e-20!13;UBERON:0000060!2.41e-20!13;UBERON:0001262!2.41e-20!13;UBERON:0004786!2.41e-20!13;UBERON:0003350!2.53e-16!9;UBERON:0004808!2.53e-16!9;UBERON:0001277!2.53e-16!9;UBERON:0004923!2.93e-14!24;UBERON:0000485!4.47e-13!11;UBERON:0003126!5.06e-08!3;UBERON:0001005!5.06e-08!3;UBERON:0007196!5.06e-08!3;UBERON:0001558!5.06e-08!3;UBERON:0000160!1.12e-07!43;UBERON:0001007!5.26e-07!128;UBERON:0001555!5.26e-07!128;UBERON:0007026!5.26e-07!128;UBERON:0004119!8.37e-07!130;UBERON:0000925!8.37e-07!130;UBERON:0006595!8.37e-07!130|ontology_enrichment_uberon_v019_2=UBERON:0000344,6.42e-29,15;UBERON:0003350,4.25e-22,9;UBERON:0004808,4.25e-22,9;UBERON:0001277,4.25e-22,9;UBERON:0001242,2.38e-20,13;UBERON:0001262,2.38e-20,13;UBERON:0004786,2.38e-20,13;UBERON:0000485,4.99e-18,11;UBERON:0004923,1.04e-17,24;UBERON:0003126,8.11e-17,3;UBERON:0001005,8.11e-17,3;UBERON:0007196,8.11e-17,3;UBERON:0001558,8.11e-17,3;UBERON:0001962,4.37e-12,2;UBERON:0001961,4.37e-12,2;UBERON:0001744,4.37e-12,2;UBERON:0002465,2.37e-08,3;UBERON:0000160,3.55e-08,31;UBERON:0003199,6.93e-07,1|phase1_expression=0,18.4956966048861,26.3899558845931,1.20985684522732,1.00179145989269,8.05820505177071,12.6150825921584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.87967418011649,8.02932483735095,11.4846392823004,14.2151458732495,11.8509177977239,0,0.252030129759931,1.99557459589774,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.76823835312181,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81438353314578,4.56047757855178,4.54972000513305,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0680364991513279,0,0,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,0,0,0,0,0,0.22237804384487,0.570676878337677,0.949058123089023,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292255857911312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139951452323658,0,0,0,0.203319467126849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129920822977795,0.179026695667481,0,0.120195449519969,0,0,0,0,0.292373642219257,0.192423683280659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0.182927972872773,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr1:179674769..179674774,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:179674769..179674774,- | |||
|id=chr1:179674769..179674774,- | |||
|ontology_enrichment_celltype=CL:0000066!4.88e-19!25;CL:0002076!1.10e-17!15;CL:0002563!2.53e-16!9;CL:0002251!2.53e-16!9;CL:0000223!3.54e-15!20;CL:0000239!5.79e-15!6;CL:0000677!5.79e-15!6;CL:0000212!5.79e-15!6;CL:0000584!5.79e-15!6;CL:0000075!1.06e-12!7;CL:0000473!1.72e-08!3;CL:0000627!1.72e-08!3;CL:0000682!1.72e-08!3;CL:0000068!5.06e-08!3;CL:0002202!5.06e-08!3;CL:0000069!5.06e-08!3;CL:0002632!5.06e-08!3;CL:0002368!5.06e-08!3;CL:0000307!5.06e-08!3;CL:0000377!5.06e-08!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.39e-36,25;CL:0000239,2.92e-33,6;CL:0000677,2.92e-33,6;CL:0000584,2.92e-33,6;CL:0002076,8.06e-29,15;CL:0000075,1.76e-28,7;CL:0000223,2.43e-26,20;CL:0002563,4.25e-22,9;CL:0002251,4.25e-22,9;CL:0000682,6.33e-18,3;CL:0000068,8.11e-17,3;CL:0002202,8.11e-17,3;CL:0000069,8.11e-17,3;CL:0002632,8.11e-17,3;CL:0002368,8.11e-17,3;CL:0000307,8.11e-17,3;CL:0000377,8.11e-17,3;CL:0000473,5.51e-08,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.02e-24!15;UBERON:0001242!2.41e-20!13;UBERON:0000060!2.41e-20!13;UBERON:0001262!2.41e-20!13;UBERON:0004786!2.41e-20!13;UBERON:0003350!2.53e-16!9;UBERON:0004808!2.53e-16!9;UBERON:0001277!2.53e-16!9;UBERON:0004923!2.93e-14!24;UBERON:0000485!4.47e-13!11;UBERON:0003126!5.06e-08!3;UBERON:0001005!5.06e-08!3;UBERON:0007196!5.06e-08!3;UBERON:0001558!5.06e-08!3;UBERON:0000160!1.12e-07!43;UBERON:0001007!5.26e-07!128;UBERON:0001555!5.26e-07!128;UBERON:0007026!5.26e-07!128;UBERON:0004119!8.37e-07!130;UBERON:0000925!8.37e-07!130;UBERON:0006595!8.37e-07!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,6.42e-29,15;UBERON:0003350,4.25e-22,9;UBERON:0004808,4.25e-22,9;UBERON:0001277,4.25e-22,9;UBERON:0001242,2.38e-20,13;UBERON:0001262,2.38e-20,13;UBERON:0004786,2.38e-20,13;UBERON:0000485,4.99e-18,11;UBERON:0004923,1.04e-17,24;UBERON:0003126,8.11e-17,3;UBERON:0001005,8.11e-17,3;UBERON:0007196,8.11e-17,3;UBERON:0001558,8.11e-17,3;UBERON:0001962,4.37e-12,2;UBERON:0001961,4.37e-12,2;UBERON:0001744,4.37e-12,2;UBERON:0002465,2.37e-08,3;UBERON:0000160,3.55e-08,31;UBERON:0003199,6.93e-07,1 | |||
|phase1_expression=0,18.4956966048861,26.3899558845931,1.20985684522732,1.00179145989269,8.05820505177071,12.6150825921584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.87967418011649,8.02932483735095,11.4846392823004,14.2151458732495,11.8509177977239,0,0.252030129759931,1.99557459589774,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.76823835312181,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81438353314578,4.56047757855178,4.54972000513305,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0680364991513279,0,0,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,0,0,0,0,0,0.22237804384487,0.570676878337677,0.949058123089023,0,0,0,0,0,0,0,0,0,0,0,0,0.0701358198903186,0,0,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292255857911312,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139951452323658,0,0,0,0.203319467126849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129920822977795,0.179026695667481,0,0.120195449519969,0,0,0,0,0.292373642219257,0.192423683280659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0936415074698824,0,0.0574354689556133,0,0,0,0,0,0,0,0,0,0,0,0.182927972872773,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:179674769..179674774,- | |||
}} |
Revision as of 19:52, 13 September 2013
Short description: | p@chr1:179674769..179674774, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:179674769..179674774, - |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.39e-36 | 25 |
brush border epithelial cell | 2.92e-33 | 6 |
gut absorptive cell | 2.92e-33 | 6 |
enterocyte | 2.92e-33 | 6 |
endo-epithelial cell | 8.06e-29 | 15 |
columnar/cuboidal epithelial cell | 1.76e-28 | 7 |
endodermal cell | 2.43e-26 | 20 |
intestinal epithelial cell | 4.25e-22 | 9 |
epithelial cell of alimentary canal | 4.25e-22 | 9 |
M cell of gut | 6.33e-18 | 3 |
duct epithelial cell | 8.11e-17 | 3 |
epithelial cell of tracheobronchial tree | 8.11e-17 | 3 |
branched duct epithelial cell | 8.11e-17 | 3 |
epithelial cell of lower respiratory tract | 8.11e-17 | 3 |
respiratory epithelial cell | 8.11e-17 | 3 |
tracheal epithelial cell | 8.11e-17 | 3 |
tracheoblast | 8.11e-17 | 3 |
defensive cell | 5.51e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
mucosa | 6.42e-29 | 15 |
epithelium of mucosa | 4.25e-22 | 9 |
gastrointestinal system epithelium | 4.25e-22 | 9 |
intestinal epithelium | 4.25e-22 | 9 |
intestinal mucosa | 2.38e-20 | 13 |
wall of intestine | 2.38e-20 | 13 |
gastrointestinal system mucosa | 2.38e-20 | 13 |
simple columnar epithelium | 4.99e-18 | 11 |
organ component layer | 1.04e-17 | 24 |
trachea | 8.11e-17 | 3 |
respiratory airway | 8.11e-17 | 3 |
tracheobronchial tree | 8.11e-17 | 3 |
lower respiratory tract | 8.11e-17 | 3 |
gut-associated lymphoid tissue | 4.37e-12 | 2 |
mucosa-associated lymphoid tissue | 4.37e-12 | 2 |
lymphoid tissue | 4.37e-12 | 2 |
lymphoid system | 2.37e-08 | 3 |
intestine | 3.55e-08 | 31 |
egg chamber | 6.93e-07 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.