FFCP PHASE1:Hg19::chr6:56483141..56483154,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C457|description=CAGE_peak_at_chr6:56483141..56483154,-|id=chr6:56483141..56483154,-|ontology_enrichment_celltype=CL:0002076!7.93e-16!43;CL:0000223!3.55e-14!59;CL:0002251!4.26e-11!21;CL:0002623!1.56e-09!3;CL:0000066!1.07e-07!254|ontology_enrichment_celltype_v019=CL:0002623;1.12e-38;3!CL:0002336;2.05e-29;1!CL:0002261;2.05e-29;1!CL:0002170;2.05e-29;1!CL:0000622;1.08e-23;5!CL:0002251;4.07e-23;20!CL:0002076;3.83e-22;42!CL:0000154;6.17e-20;6!CL:0000150;1.19e-13;9!CL:0002231;9.43e-11;3|ontology_enrichment_celltype_v019_2=CL:0002623,8.37e-39,3;CL:0002336,9.99e-30,1;CL:0002261,9.99e-30,1;CL:0002170,9.99e-30,1;CL:0002076,1.76e-24,42;CL:0000622,9.08e-24,5;CL:0002251,3.15e-23,20;CL:0000154,5.35e-20,6;CL:0000223,7.88e-18,58;CL:0000150,1.08e-13,9;CL:0002231,1.09e-10,3|ontology_enrichment_development_v019=CL:0000223;2.58e-09;58|ontology_enrichment_disease=DOID:1749!8.51e-11!14|ontology_enrichment_disease_v019=DOID:1749;4.56e-09;14|ontology_enrichment_disease_v019_2=DOID:1749,4.95e-09,14|ontology_enrichment_uberon=UBERON:0003729!5.27e-09!5;UBERON:0004733!9.52e-07!12;UBERON:0002028!9.52e-07!12;UBERON:0007277!9.52e-07!12|ontology_enrichment_uberon_v019=UBERON:0001044;6.17e-20;6!UBERON:0003293;6.17e-20;6!UBERON:0003294;6.17e-20;6!UBERON:0010047;6.17e-20;6!UBERON:0003408;6.17e-20;6!UBERON:0000167;6.17e-20;6!UBERON:0000165;1.09e-16;28!UBERON:0000161;3.62e-14;19!UBERON:0000166;3.62e-14;19!UBERON:0003729;1.08e-09;13!UBERON:0001041;3.96e-09;14!UBERON:0003343;2.18e-08;4!UBERON:0004785;2.18e-08;4!UBERON:0007811;5.77e-08;52!UBERON:0000153;3.78e-07;54!UBERON:0000033;8.58e-07;50|ontology_enrichment_uberon_v019_2=UBERON:0001044,5.35e-20,6;UBERON:0003293,5.35e-20,6;UBERON:0003294,5.35e-20,6;UBERON:0010047,5.35e-20,6;UBERON:0000167,5.35e-20,6;UBERON:0000165,3.28e-16,29;UBERON:0000930,3.28e-16,29;UBERON:0000161,4.12e-13,36;UBERON:0003408,2.00e-12,10;UBERON:0000166,2.26e-12,22;UBERON:0001444,8.37e-10,49;UBERON:0003729,9.51e-10,13;UBERON:0000033,1.24e-08,56;UBERON:0003343,2.11e-08,4;UBERON:0004785,2.11e-08,4;UBERON:0000153,7.72e-08,62;UBERON:0007811,7.72e-08,62;UBERON:0003102,1.72e-07,99|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0.175669571386252,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0.211931901159562,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,0,0.804231779293047,1.66659201285353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.567100388969546,0.268675568108545,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,1.28913384510255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0.165284915360978,1.53752053892085,0.255225424989168,0.708104465988849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0.295547618953547,0,0,0.278847488557207,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167821586975843,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0,0.195984794828755,0,0.17472666824203,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0,0.19980960958213,0,0,0,0.14405479798815,0,0,0,0.209205692624666,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0.537862017998534,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0.245772908753719,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0,0,0,0,0,0,0.11796972334774,1.65085738669511,0.462102664601353,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0.511049710558381,0,0,0,0,0,0,0.171488009437418,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,1.65772931330429,2.0486217251274,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,0.178553938605658,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0.101988829741982,0,0.0918948995348449,0,0,0,0,0.103432995861895,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr6:56483141..56483154,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C457 | |||
|description=CAGE_peak_at_chr6:56483141..56483154,- | |||
|id=chr6:56483141..56483154,- | |||
|ontology_enrichment_celltype=CL:0002076!7.93e-16!43;CL:0000223!3.55e-14!59;CL:0002251!4.26e-11!21;CL:0002623!1.56e-09!3;CL:0000066!1.07e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0002623;1.12e-38;3!CL:0002336;2.05e-29;1!CL:0002261;2.05e-29;1!CL:0002170;2.05e-29;1!CL:0000622;1.08e-23;5!CL:0002251;4.07e-23;20!CL:0002076;3.83e-22;42!CL:0000154;6.17e-20;6!CL:0000150;1.19e-13;9!CL:0002231;9.43e-11;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002623,8.37e-39,3;CL:0002336,9.99e-30,1;CL:0002261,9.99e-30,1;CL:0002170,9.99e-30,1;CL:0002076,1.76e-24,42;CL:0000622,9.08e-24,5;CL:0002251,3.15e-23,20;CL:0000154,5.35e-20,6;CL:0000223,7.88e-18,58;CL:0000150,1.08e-13,9;CL:0002231,1.09e-10,3 | |||
|ontology_enrichment_development_v019=CL:0000223;2.58e-09;58 | |||
|ontology_enrichment_disease=DOID:1749!8.51e-11!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.56e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,4.95e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0003729!5.27e-09!5;UBERON:0004733!9.52e-07!12;UBERON:0002028!9.52e-07!12;UBERON:0007277!9.52e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0001044;6.17e-20;6!UBERON:0003293;6.17e-20;6!UBERON:0003294;6.17e-20;6!UBERON:0010047;6.17e-20;6!UBERON:0003408;6.17e-20;6!UBERON:0000167;6.17e-20;6!UBERON:0000165;1.09e-16;28!UBERON:0000161;3.62e-14;19!UBERON:0000166;3.62e-14;19!UBERON:0003729;1.08e-09;13!UBERON:0001041;3.96e-09;14!UBERON:0003343;2.18e-08;4!UBERON:0004785;2.18e-08;4!UBERON:0007811;5.77e-08;52!UBERON:0000153;3.78e-07;54!UBERON:0000033;8.58e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001044,5.35e-20,6;UBERON:0003293,5.35e-20,6;UBERON:0003294,5.35e-20,6;UBERON:0010047,5.35e-20,6;UBERON:0000167,5.35e-20,6;UBERON:0000165,3.28e-16,29;UBERON:0000930,3.28e-16,29;UBERON:0000161,4.12e-13,36;UBERON:0003408,2.00e-12,10;UBERON:0000166,2.26e-12,22;UBERON:0001444,8.37e-10,49;UBERON:0003729,9.51e-10,13;UBERON:0000033,1.24e-08,56;UBERON:0003343,2.11e-08,4;UBERON:0004785,2.11e-08,4;UBERON:0000153,7.72e-08,62;UBERON:0007811,7.72e-08,62;UBERON:0003102,1.72e-07,99 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0.175669571386252,0,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0.211931901159562,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658501712451753,0,0.804231779293047,1.66659201285353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.567100388969546,0.268675568108545,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,1.28913384510255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0.165284915360978,1.53752053892085,0.255225424989168,0.708104465988849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0.295547618953547,0,0,0.278847488557207,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167821586975843,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277349346026277,0,0.195984794828755,0,0.17472666824203,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0,0.19980960958213,0,0,0,0.14405479798815,0,0,0,0.209205692624666,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0.537862017998534,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0.245772908753719,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.319267718114302,0,0,0,0,0,0,0.11796972334774,1.65085738669511,0.462102664601353,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0.511049710558381,0,0,0,0,0,0,0.171488009437418,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,1.65772931330429,2.0486217251274,0.691259661814092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0999411559249289,0.178553938605658,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0.101988829741982,0,0.0918948995348449,0,0,0,0,0.103432995861895,0,0,0,0,0.224263725161227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr6:56483141..56483154,- | |||
}} |
Revision as of 21:28, 13 September 2013
Short description: | p@chr6:56483141..56483154, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:56483141..56483154, - |
Coexpression cluster: | C457_salivary_Prostate_oral_Small_Keratinocyte_Urothelial_Mammary |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell of salivary gland | 8.37e-39 | 3 |
buccal mucosa cell | 9.99e-30 | 1 |
endothelial cell of viscerocranial mucosa | 9.99e-30 | 1 |
keratinized cell of the oral mucosa | 9.99e-30 | 1 |
endo-epithelial cell | 1.76e-24 | 42 |
acinar cell | 9.08e-24 | 5 |
epithelial cell of alimentary canal | 3.15e-23 | 20 |
protein secreting cell | 5.35e-20 | 6 |
endodermal cell | 7.88e-18 | 58 |
glandular epithelial cell | 1.08e-13 | 9 |
epithelial cell of prostate | 1.09e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
saliva-secreting gland | 5.35e-20 | 6 |
gland of oral region | 5.35e-20 | 6 |
gland of foregut | 5.35e-20 | 6 |
oral gland | 5.35e-20 | 6 |
oral cavity | 5.35e-20 | 6 |
mouth | 3.28e-16 | 29 |
stomodeum | 3.28e-16 | 29 |
orifice | 4.12e-13 | 36 |
gland of gut | 2.00e-12 | 10 |
oral opening | 2.26e-12 | 22 |
subdivision of head | 8.37e-10 | 49 |
mouth mucosa | 9.51e-10 | 13 |
head | 1.24e-08 | 56 |
mucosa of oral region | 2.11e-08 | 4 |
respiratory system mucosa | 2.11e-08 | 4 |
anterior region of body | 7.72e-08 | 62 |
craniocervical region | 7.72e-08 | 62 |
surface structure | 1.72e-07 | 99 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.95e-09 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.