FFCP PHASE1:Mm9::chr3:3556493..3556503,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=58|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:3556493..3556503,+|id=chr3:3556493..3556503,+|ontology_enrichment_celltype=CL:0000473!3.45e-20!3;CL:0000627!3.45e-20!3;CL:0000682!3.45e-20!3;CL:0000239!1.41e-17!6;CL:0000677!1.41e-17!6;CL:0000212!1.41e-17!6;CL:0000584!1.41e-17!6;CL:0000075!4.14e-15!7;CL:0000066!3.22e-12!25;CL:0002563!8.23e-12!9;CL:0002251!8.23e-12!9;CL:0002076!3.65e-07!15|ontology_enrichment_celltype_v019_2=CL:0000682,3.10e-27,3;CL:0000239,7.32e-24,6;CL:0000677,7.32e-24,6;CL:0000584,7.32e-24,6;CL:0000075,1.60e-20,7;CL:0000066,4.14e-17,25;CL:0002563,4.63e-16,9;CL:0002251,4.63e-16,9;CL:0000473,4.43e-12,7;CL:0002076,8.81e-10,15;CL:0000223,2.08e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!1.93e-20!15;UBERON:0001962!1.09e-13!2;UBERON:0001961!1.09e-13!2;UBERON:0001744!1.09e-13!2;UBERON:0004923!1.38e-12!24;UBERON:0001242!2.20e-12!13;UBERON:0000060!2.20e-12!13;UBERON:0001262!2.20e-12!13;UBERON:0004786!2.20e-12!13;UBERON:0003350!8.23e-12!9;UBERON:0004808!8.23e-12!9;UBERON:0001277!8.23e-12!9;UBERON:0000485!1.05e-09!11;UBERON:0002465!1.97e-09!3;UBERON:0003199!1.78e-07!1|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.11e-28,15;UBERON:0001962,2.91e-18,2;UBERON:0001961,2.91e-18,2;UBERON:0001744,2.91e-18,2;UBERON:0004923,1.34e-17,24;UBERON:0001242,5.37e-17,13;UBERON:0001262,5.37e-17,13;UBERON:0004786,5.37e-17,13;UBERON:0003350,4.63e-16,9;UBERON:0004808,4.63e-16,9;UBERON:0001277,4.63e-16,9;UBERON:0000485,3.26e-13,11;UBERON:0002465,1.63e-12,3;UBERON:0003199,1.03e-09,1;UBERON:0000160,3.54e-07,31|phase1_expression=0,2.79180326111489,2.27499619694768,0,0,2.01455126294268,3.73780224952841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.87986361028132,1.60586496747019,1.72269589234506,3.01533397311352,4.09395342103189,0,0,1.99557459589774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216138049874694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr3:3556493..3556503,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:3556493..3556503,+ | |||
|id=chr3:3556493..3556503,+ | |||
|ontology_enrichment_celltype=CL:0000473!3.45e-20!3;CL:0000627!3.45e-20!3;CL:0000682!3.45e-20!3;CL:0000239!1.41e-17!6;CL:0000677!1.41e-17!6;CL:0000212!1.41e-17!6;CL:0000584!1.41e-17!6;CL:0000075!4.14e-15!7;CL:0000066!3.22e-12!25;CL:0002563!8.23e-12!9;CL:0002251!8.23e-12!9;CL:0002076!3.65e-07!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,3.10e-27,3;CL:0000239,7.32e-24,6;CL:0000677,7.32e-24,6;CL:0000584,7.32e-24,6;CL:0000075,1.60e-20,7;CL:0000066,4.14e-17,25;CL:0002563,4.63e-16,9;CL:0002251,4.63e-16,9;CL:0000473,4.43e-12,7;CL:0002076,8.81e-10,15;CL:0000223,2.08e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.93e-20!15;UBERON:0001962!1.09e-13!2;UBERON:0001961!1.09e-13!2;UBERON:0001744!1.09e-13!2;UBERON:0004923!1.38e-12!24;UBERON:0001242!2.20e-12!13;UBERON:0000060!2.20e-12!13;UBERON:0001262!2.20e-12!13;UBERON:0004786!2.20e-12!13;UBERON:0003350!8.23e-12!9;UBERON:0004808!8.23e-12!9;UBERON:0001277!8.23e-12!9;UBERON:0000485!1.05e-09!11;UBERON:0002465!1.97e-09!3;UBERON:0003199!1.78e-07!1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.11e-28,15;UBERON:0001962,2.91e-18,2;UBERON:0001961,2.91e-18,2;UBERON:0001744,2.91e-18,2;UBERON:0004923,1.34e-17,24;UBERON:0001242,5.37e-17,13;UBERON:0001262,5.37e-17,13;UBERON:0004786,5.37e-17,13;UBERON:0003350,4.63e-16,9;UBERON:0004808,4.63e-16,9;UBERON:0001277,4.63e-16,9;UBERON:0000485,3.26e-13,11;UBERON:0002465,1.63e-12,3;UBERON:0003199,1.03e-09,1;UBERON:0000160,3.54e-07,31 | |||
|phase1_expression=0,2.79180326111489,2.27499619694768,0,0,2.01455126294268,3.73780224952841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.87986361028132,1.60586496747019,1.72269589234506,3.01533397311352,4.09395342103189,0,0,1.99557459589774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216138049874694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:3556493..3556503,+ | |||
}} |
Revision as of 02:09, 14 September 2013
Short description: | p@chr3:3556493..3556503, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:3556493..3556503, + |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 3.10e-27 | 3 |
brush border epithelial cell | 7.32e-24 | 6 |
gut absorptive cell | 7.32e-24 | 6 |
enterocyte | 7.32e-24 | 6 |
columnar/cuboidal epithelial cell | 1.60e-20 | 7 |
epithelial cell | 4.14e-17 | 25 |
intestinal epithelial cell | 4.63e-16 | 9 |
epithelial cell of alimentary canal | 4.63e-16 | 9 |
defensive cell | 4.43e-12 | 7 |
endo-epithelial cell | 8.81e-10 | 15 |
endodermal cell | 2.08e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 3.11e-28 | 15 |
gut-associated lymphoid tissue | 2.91e-18 | 2 |
mucosa-associated lymphoid tissue | 2.91e-18 | 2 |
lymphoid tissue | 2.91e-18 | 2 |
organ component layer | 1.34e-17 | 24 |
intestinal mucosa | 5.37e-17 | 13 |
wall of intestine | 5.37e-17 | 13 |
gastrointestinal system mucosa | 5.37e-17 | 13 |
epithelium of mucosa | 4.63e-16 | 9 |
gastrointestinal system epithelium | 4.63e-16 | 9 |
intestinal epithelium | 4.63e-16 | 9 |
simple columnar epithelium | 3.26e-13 | 11 |
lymphoid system | 1.63e-12 | 3 |
egg chamber | 1.03e-09 | 1 |
intestine | 3.54e-07 | 31 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.