FFCP PHASE1:Hg19::chrX:9880496..9880550,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=357|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=630|TSSclassifier=S|UniProt=F5H3B6|association_with_transcript=84bp_to_ENST00000418909,uc004csv.2,uc011mic.1_5end|description=CAGE_peak_2_at_SHROOM2_5end|id=chrX:9880496..9880550,+|ontology_enrichment_celltype=CL:0002076!5.66e-12!43;CL:0002159!1.95e-10!13;CL:0002368!1.43e-08!13;CL:0000223!3.38e-07!59;CL:0002251!6.29e-07!21|ontology_enrichment_celltype_v019=CL:0002368;4.27e-11;13!CL:0002076;4.88e-11;42!CL:0002159;2.14e-10;14!CL:0000244;4.81e-08;4!CL:0000731;4.81e-08;4!CL:0002251;7.93e-08;20!CL:0000240;7.03e-07;6!CL:0000311;7.03e-07;6!CL:0000079;7.03e-07;6!CL:0000237;7.03e-07;6|ontology_enrichment_celltype_v019_2=CL:0002076,2.00e-13,42;CL:0002368,4.85e-11,13;CL:0002159,2.19e-10,14;CL:0000223,5.23e-09,58;CL:0000244,4.50e-08,4;CL:0000731,4.50e-08,4;CL:0002251,9.57e-08,20|ontology_enrichment_development_v019=UBERON:0006601;6.39e-12;82!CL:0000357;7.03e-07;6!CL:0000114;7.03e-07;6|ontology_enrichment_disease=DOID:1749!1.63e-07!14|ontology_enrichment_disease_v019=DOID:1749;2.18e-08;14|ontology_enrichment_disease_v019_2=DOID:1749,2.59e-08,14|ontology_enrichment_uberon=UBERON:0004121!3.31e-44!169;UBERON:0000924!1.88e-43!173;UBERON:0006601!1.88e-43!173;UBERON:0000153!6.86e-38!129;UBERON:0007811!6.86e-38!129;UBERON:0000033!2.04e-37!123;UBERON:0001017!4.28e-37!82;UBERON:0001049!4.66e-37!57;UBERON:0005068!4.66e-37!57;UBERON:0006241!4.66e-37!57;UBERON:0007135!4.66e-37!57;UBERON:0000073!6.84e-36!94;UBERON:0001016!6.84e-36!94;UBERON:0005743!1.91e-35!86;UBERON:0002780!4.06e-33!41;UBERON:0001890!4.06e-33!41;UBERON:0006240!4.06e-33!41;UBERON:0003080!5.53e-32!42;UBERON:0002020!1.43e-30!34;UBERON:0003528!1.43e-30!34;UBERON:0001893!1.52e-30!34;UBERON:0002616!4.29e-30!59;UBERON:0000955!4.33e-30!69;UBERON:0006238!4.33e-30!69;UBERON:0002791!1.69e-29!33;UBERON:0001869!3.55e-29!32;UBERON:0003075!4.58e-29!86;UBERON:0007284!4.58e-29!86;UBERON:0002346!5.65e-28!90;UBERON:0003056!7.05e-26!61;UBERON:0007023!7.54e-26!115;UBERON:0002619!4.62e-24!22;UBERON:0000956!1.23e-23!25;UBERON:0000203!1.23e-23!25;UBERON:0001950!4.49e-22!20;UBERON:0000064!1.38e-18!219;UBERON:0000475!3.71e-18!365;UBERON:0000922!1.06e-12!612;UBERON:0002050!1.69e-12!605;UBERON:0005423!1.69e-12!605;UBERON:0000923!4.08e-12!604;UBERON:0005291!4.08e-12!604;UBERON:0006598!4.08e-12!604;UBERON:0002532!4.08e-12!604;UBERON:0000467!1.65e-11!625;UBERON:0000480!2.07e-11!626;UBERON:0000062!3.84e-11!511;UBERON:0000481!7.26e-11!347;UBERON:0000468!1.88e-10!659;UBERON:0000483!3.19e-10!309;UBERON:0000119!3.31e-10!312;UBERON:0004111!2.00e-09!241;UBERON:0000477!3.82e-09!286;UBERON:0007196!4.47e-09!14;UBERON:0001558!4.47e-09!14;UBERON:0002308!2.40e-08!9;UBERON:0000125!2.40e-08!9;UBERON:0000200!2.54e-08!6;UBERON:0002420!2.68e-08!9;UBERON:0007245!2.68e-08!9;UBERON:0010009!2.68e-08!9;UBERON:0010011!2.68e-08!9;UBERON:0000454!2.68e-08!9;UBERON:0000165!3.96e-08!28;UBERON:0000930!3.96e-08!28;UBERON:0001004!7.72e-08!72;UBERON:0000166!1.08e-07!21;UBERON:0001871!1.33e-07!7;UBERON:0000161!2.27e-07!35;UBERON:0002021!2.58e-07!5;UBERON:0001872!2.99e-07!5;UBERON:0003126!5.01e-07!7;UBERON:0001005!5.01e-07!7;UBERON:0003076!9.11e-07!15;UBERON:0003057!9.11e-07!15|ontology_enrichment_uberon_v019=UBERON:0002619;6.47e-37;22!UBERON:0001869;7.56e-34;32!UBERON:0001950;8.33e-34;20!UBERON:0003528;8.38e-33;34!UBERON:0002020;8.38e-33;34!UBERON:0001893;1.25e-32;34!UBERON:0000956;9.01e-32;25!UBERON:0000203;9.01e-32;25!UBERON:0002791;2.26e-31;32!UBERON:0002780;2.54e-24;41!UBERON:0001890;2.54e-24;41!UBERON:0000073;3.51e-20;53!UBERON:0002616;3.51e-20;53!UBERON:0001017;5.45e-16;75!UBERON:0000955;2.09e-15;68!UBERON:0001016;5.16e-13;83!UBERON:0000200;4.09e-12;6!UBERON:0002021;1.58e-10;5!UBERON:0001872;2.16e-10;5!UBERON:0002298;1.46e-09;6!UBERON:0001871;1.73e-09;6!UBERON:0000365;1.78e-09;5!UBERON:0000349;9.53e-09;5!UBERON:0000486;2.35e-08;12!UBERON:0005910;8.50e-08;6!UBERON:0000125;1.09e-07;9!UBERON:0002308;1.09e-07;9!UBERON:0002420;1.15e-07;9!UBERON:0007245;1.15e-07;9!UBERON:0010009;1.15e-07;9!UBERON:0010011;1.15e-07;9!UBERON:0000454;1.15e-07;9!UBERON:0007196;1.24e-07;15!UBERON:0001558;1.24e-07;15!UBERON:0001870;6.52e-07;3!UBERON:0004121;8.95e-07;165|ontology_enrichment_uberon_v019_2=UBERON:0001049,3.73e-38,56;UBERON:0005068,3.73e-38,56;UBERON:0006241,3.73e-38,56;UBERON:0007135,3.73e-38,56;UBERON:0001869,4.69e-38,32;UBERON:0003528,6.80e-38,34;UBERON:0002020,6.80e-38,34;UBERON:0001893,7.42e-38,34;UBERON:0001017,1.67e-37,81;UBERON:0002619,6.45e-37,22;UBERON:0000073,2.82e-36,53;UBERON:0002616,2.82e-36,53;UBERON:0010371,6.44e-36,104;UBERON:0004121,8.51e-36,171;UBERON:0000924,8.51e-36,171;UBERON:0006601,8.51e-36,171;UBERON:0001016,1.66e-35,89;UBERON:0002791,4.44e-35,32;UBERON:0002780,2.35e-34,41;UBERON:0001890,2.35e-34,41;UBERON:0003080,2.35e-34,41;UBERON:0006240,2.35e-34,41;UBERON:0001950,8.15e-34,20;UBERON:0000955,8.48e-33,68;UBERON:0006238,8.48e-33,68;UBERON:0000956,8.99e-32,25;UBERON:0000203,8.99e-32,25;UBERON:000307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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=357 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=630 | |||
|TSSclassifier=S | |||
|UniProt=F5H3B6 | |||
|association_with_transcript=84bp_to_ENST00000418909,uc004csv.2,uc011mic.1_5end | |||
|description=CAGE_peak_2_at_SHROOM2_5end | |||
|id=chrX:9880496..9880550,+ | |||
|ontology_enrichment_celltype=CL:0002076!5.66e-12!43;CL:0002159!1.95e-10!13;CL:0002368!1.43e-08!13;CL:0000223!3.38e-07!59;CL:0002251!6.29e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002368;4.27e-11;13!CL:0002076;4.88e-11;42!CL:0002159;2.14e-10;14!CL:0000244;4.81e-08;4!CL:0000731;4.81e-08;4!CL:0002251;7.93e-08;20!CL:0000240;7.03e-07;6!CL:0000311;7.03e-07;6!CL:0000079;7.03e-07;6!CL:0000237;7.03e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.00e-13,42;CL:0002368,4.85e-11,13;CL:0002159,2.19e-10,14;CL:0000223,5.23e-09,58;CL:0000244,4.50e-08,4;CL:0000731,4.50e-08,4;CL:0002251,9.57e-08,20 | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.39e-12;82!CL:0000357;7.03e-07;6!CL:0000114;7.03e-07;6 | |||
|ontology_enrichment_disease=DOID:1749!1.63e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.18e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.59e-08,14 | |||
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| |||
|short_description=p2@SHROOM2 | |||
}} |
Revision as of 12:42, 14 September 2013
Short description: | p2@SHROOM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SHROOM2_5end |
Coexpression cluster: | NA |
Association with transcript: | 84bp_to_ENST00000418909, uc004csv.2, uc011mic.1_5end |
EntrezGene: | SHROOM2 |
HGNC: | 630 |
UniProt: | F5H3B6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 2.00e-13 | 42 |
respiratory epithelial cell | 4.85e-11 | 13 |
general ecto-epithelial cell | 2.19e-10 | 14 |
endodermal cell | 5.23e-09 | 58 |
transitional epithelial cell | 4.50e-08 | 4 |
urothelial cell | 4.50e-08 | 4 |
epithelial cell of alimentary canal | 9.57e-08 | 20 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.59e-08 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.