FFCP PHASE1:Mm9::chr9:106101584..106101617,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=67905|HGNC=|MCL_coexpression_id=3|UniProt=E9Q2I3|association_with_transcript=0bp_to_ENSMUST00000140761_5end|description=CAGE_peak_2_at_Ppm1m_5end|id=chr9:106101584..106101617,-|ontology_enrichment_celltype=CL:0000219!6.52e-08!54|ontology_enrichment_celltype_v019_2=CL:0000219,6.07e-09,54;CL:0002320,1.11e-07,46;CL:0000134,1.11e-07,46|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002204!3.74e-07!32|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.11e-07,46;UBERON:0002204,2.71e-07,32|phase1_expression=0.960893082628764,0,0,0,0,0.33575854382378,0.467225281191051,6.58528949552039,0.703943610758334,0.234064526321993,0.34243593645101,0.319088635981346,5.64962408772979,3.67165690159789,1.66554880907831,1.21485160433896,0,4.25873923233621,3.83920414096069,8.48779303596061,1.53077922271926,3.27660138962921,1.82839852397255,0.799962113967033,0.91763712426868,0.57423196411502,0.430761996159075,0.215471232685889,0.190023419456374,0,0.886922042621219,0,0.61506478758457,0,1.1554064790051,0.664938581433969,1.63335485009895,25.1118978442145,22.6587249911902,28.7938059185589,31.7645003536748,30.0540013381716,40.7828696546169,2.01434908760924,2.93993100536592,4.03802854755699,3.12956537739216,3.48840250208714,5.4921545683618,5.44403717407994,2.09979632438044,1.43752564364972,6.54352163625172,5.07753499407941,2.68875039313971,2.57259436035947,5.15760191889762,1.03134418455488,0.809265843438391,0,1.90149421051854,2.71075625655306,1.77858959222228,5.84934816232909,5.93319817540185,7.104801149461,5.99200221036809,4.99483796918021,0.622137673850866,0.135005938331691,0,2.85650984403804,2.42955395046775,0.489963196859816,0.958454710182364,0.919218786610021,0,1.14918604276669,1.99688493233117,0.395658863190582,0.274462930807229,0,3.07101298901519,2.8138130501584,2.44477196442896,0.589257170947335,0.711858403995515,0.372798891650601,0.757261933331841,1.73814588245607,1.15945795480671,2.58127163094416,2.719885334831,4.85732872474035,1.29955283489534,4.03224198387602,1.96622188184453,2.21559419351475,3.37721805983729,2.82671659608272,0.704217098883403,1.28326477414318,0,0,4.11332977921307,2.28023878927589,2.02209778005913,1.94112595522402,3.36619248741323,4.75014845007439,3.29622120855658,3.95805121805784,4.38169444786511,3.3158980921577,3.52766121407114,8.54532821041793,0.741584903203122,7.51916655983541,1.76922110389975,1.45590164952668,2.87093973998512,1.45462575940567,1.86391761218122,2.92780797011547,1.25668024088073,1.02182822083437,2.87556298814209,4.79922184794726,3.17675567682662,2.69623150928681,1.37250180845588,1.00523481690292,1.39059456153821,1.27857728665165,1.87009240103604,2.75810147215188,1.73126918545538,2.61254638281195,1.76905930903572,2.52530227063769,1.43132487258974,1.60931473103431,0.900310649026746,1.20563854268572,0.408218994907967,0.768682321709099,0.843315521037559,2.58703370739016,1.07783996466421,0.756424320671277,1.40760899331159,0.876782929710299,1.39023624612799,0.348252166522167,0.61734640922383,2.18937693500343,2.1066395619397,1.80143534980301,2.27330799516474,1.86413195281952,0.938104239924385,1.62055855314913,1.89395788468168,0.787056926989615,1.3884040159864,0.697601834251224,1.07309360559848,0.583826711835847,1.15191894939436,1.47750717671186,0.729619285912702,1.02339991197733,1.09775057645525,1.20785776884335,0.841159794256509,0.720332286654991,0.991256348951394,0.793351699990633,1.49301775374664,1.85789337488351,1.15980715189884,0.605050573870028,0.444756087689741,0.951128130562796,0,0.329397909448022,0.754005626400808,0.397912944082302,0.779856348476481,0.898819408654221,0.432276099749388,0.597423819763102,0.379335801906163,1.14248512609729,1.1270773567308,0.407302655690628,1.16371492300575,1.47285221769669,1.26473074248515,0.738050739898011,1.8839847340965,0.740382983530803,1.48226313543574,1.00107063429656,0.982794975566015,1.12431056192427,1.82574109249653,0.72353147925725,2.80088436959562,0.575392274901621,0.810676133875177,1.09824565275233,1.43768206527355,0.744281895337007,1.24815069245824,0.757736633841335,1.61457672169721,0,2.21703828199926,1.13694847062291,1.46668478797823,1.86719594352707,2.34690248288502,1.67506257441816,0.476087281772027,2.92700471786698,0.945810864637146,1.32878813789265,2.71073106717728,3.11340297959902,1.55416483679306,3.03763023021174,3.01582567878545,4.35124547054968,4.91764273019036,4.41498794087572,1.76605648986571,1.99259867206745,0.655739781506702,2.01976741763498,0.631016438832513,1.17131623288992,0.646270193198397,1.19484398976276,2.00518806674155,0.566153061577665,2.02405350837447,2.04579100537918,1.58115111178609,0.963963949265421,2.12910127812403,1.95872164033981,1.79175655288934,1.31976098378028,0,1.45668381692989,0.604647113929502,1.13163047853539,0.590603785761546,0.307435147943927,0.775284879504663,1.45413491791002,0.356497378384721,0.632073515871632,0,0,2.38307724027652,0.900305470156551,1.16422815404479,1.71469628025274,1.06404140185364,1.96205699362278,1.48094118541909,0.608929898229199,0.469343416127421,1.48282449604674,0.661585194164886,1.15420377059036,0.807322133479528,1.68876189798836,0.477489376012546,0.820704498725306,0.291480836629851,0.927126510052548,1.70870880797853,1.23832120777933,1.85194527369712,1.69531611304222,1.0935538217682,1.60144721244566,2.37969801991397,2.37917468950219,1.65839968565309,0.954670618015114,1.26534397432454,0.813277868507395,0.540026704109006,1.25452977608681,0.655087691238533,1.07891477107857,1.07449492442937,1.04702376793612,1.42576470620972,4.97071450469541,0.56369293868419,1.79419855252775,1.98550188548517,3.11121901350476,2.71235629303235,2.02747350588934,1.5256441023948,4.1665403150064,4.61381115473128,3.38217769156408,2.30424005006292,1.89606672376907,2.43270258348197,1.95150818613172,0.51968329191118,1.43221356533985,0.79472541912506,1.9231271923195,1.9199638532695,0.908698049533329,1.600342939755,1.20991422164209,0.779663045918019,1.25075394132428,0.935015217452552,0.453460767230423,1.10992976687032,0.986852422704233,0.335769232728157,1.54551675225752,1.12609485270709,1.09890974560359,0.857473516316263,1.00314420807073,1.6942555278512,0.460325236507177,1.14579102687879,1.54667864109319,0.685082519770642,0,2.70009000092722,2.2516060161211,0.453142408984205,1.03552062350364,1.03787347584177,1.19707462020309,1.19513524027894,0.486213434136588,2.30574478890781,1.65459157605013,1.77797382241292,1.85431551515005,1.92551525755089,1.26348605881899,1.77435509923168,0.754505365544305,2.43467919421694,2.30490548657529,2.64203157195821,0.952587382566147,3.01299247456624,2.70072908649187,2.47251540481984,2.50238164228475,2.74295401908332,2.8396128985494,2.14592570952589,1.59881058295561,2.25862512996793,2.28459441307527,2.0122077016005,3.15683653725411,2.03706170768793,0.561142271657738,2.13543032623513,3.15214343601803,2.04615521584845,2.47898945897546,2.3148793317737,1.24905288968973,3.50897412668113,1.07435527024149,0.57386499620653,1.76473135295612,3.01428186306548|short_description=p2@Ppm1m}} | ||
|EntrezGene=67905 | |||
|HGNC= | |||
|MCL_coexpression_id=3 | |||
|UniProt=E9Q2I3 | |||
|association_with_transcript=0bp_to_ENSMUST00000140761_5end | |||
|description=CAGE_peak_2_at_Ppm1m_5end | |||
|id=chr9:106101584..106101617,- | |||
|ontology_enrichment_celltype=CL:0000219!6.52e-08!54 | |||
|ontology_enrichment_celltype_v019_2=CL:0000219,6.07e-09,54;CL:0002320,1.11e-07,46;CL:0000134,1.11e-07,46 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!3.74e-07!32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.11e-07,46;UBERON:0002204,2.71e-07,32 | |||
|phase1_expression=0.960893082628764,0,0,0,0,0.33575854382378,0.467225281191051,6.58528949552039,0.703943610758334,0.234064526321993,0.34243593645101,0.319088635981346,5.64962408772979,3.67165690159789,1.66554880907831,1.21485160433896,0,4.25873923233621,3.83920414096069,8.48779303596061,1.53077922271926,3.27660138962921,1.82839852397255,0.799962113967033,0.91763712426868,0.57423196411502,0.430761996159075,0.215471232685889,0.190023419456374,0,0.886922042621219,0,0.61506478758457,0,1.1554064790051,0.664938581433969,1.63335485009895,25.1118978442145,22.6587249911902,28.7938059185589,31.7645003536748,30.0540013381716,40.7828696546169,2.01434908760924,2.93993100536592,4.03802854755699,3.12956537739216,3.48840250208714,5.4921545683618,5.44403717407994,2.09979632438044,1.43752564364972,6.54352163625172,5.07753499407941,2.68875039313971,2.57259436035947,5.15760191889762,1.03134418455488,0.809265843438391,0,1.90149421051854,2.71075625655306,1.77858959222228,5.84934816232909,5.93319817540185,7.104801149461,5.99200221036809,4.99483796918021,0.622137673850866,0.135005938331691,0,2.85650984403804,2.42955395046775,0.489963196859816,0.958454710182364,0.919218786610021,0,1.14918604276669,1.99688493233117,0.395658863190582,0.274462930807229,0,3.07101298901519,2.8138130501584,2.44477196442896,0.589257170947335,0.711858403995515,0.372798891650601,0.757261933331841,1.73814588245607,1.15945795480671,2.58127163094416,2.719885334831,4.85732872474035,1.29955283489534,4.03224198387602,1.96622188184453,2.21559419351475,3.37721805983729,2.82671659608272,0.704217098883403,1.28326477414318,0,0,4.11332977921307,2.28023878927589,2.02209778005913,1.94112595522402,3.36619248741323,4.75014845007439,3.29622120855658,3.95805121805784,4.38169444786511,3.3158980921577,3.52766121407114,8.54532821041793,0.741584903203122,7.51916655983541,1.76922110389975,1.45590164952668,2.87093973998512,1.45462575940567,1.86391761218122,2.92780797011547,1.25668024088073,1.02182822083437,2.87556298814209,4.79922184794726,3.17675567682662,2.69623150928681,1.37250180845588,1.00523481690292,1.39059456153821,1.27857728665165,1.87009240103604,2.75810147215188,1.73126918545538,2.61254638281195,1.76905930903572,2.52530227063769,1.43132487258974,1.60931473103431,0.900310649026746,1.20563854268572,0.408218994907967,0.768682321709099,0.843315521037559,2.58703370739016,1.07783996466421,0.756424320671277,1.40760899331159,0.876782929710299,1.39023624612799,0.348252166522167,0.61734640922383,2.18937693500343,2.1066395619397,1.80143534980301,2.27330799516474,1.86413195281952,0.938104239924385,1.62055855314913,1.89395788468168,0.787056926989615,1.3884040159864,0.697601834251224,1.07309360559848,0.583826711835847,1.15191894939436,1.47750717671186,0.729619285912702,1.02339991197733,1.09775057645525,1.20785776884335,0.841159794256509,0.720332286654991,0.991256348951394,0.793351699990633,1.49301775374664,1.85789337488351,1.15980715189884,0.605050573870028,0.444756087689741,0.951128130562796,0,0.329397909448022,0.754005626400808,0.397912944082302,0.779856348476481,0.898819408654221,0.432276099749388,0.597423819763102,0.379335801906163,1.14248512609729,1.1270773567308,0.407302655690628,1.16371492300575,1.47285221769669,1.26473074248515,0.738050739898011,1.8839847340965,0.740382983530803,1.48226313543574,1.00107063429656,0.982794975566015,1.12431056192427,1.82574109249653,0.72353147925725,2.80088436959562,0.575392274901621,0.810676133875177,1.09824565275233,1.43768206527355,0.744281895337007,1.24815069245824,0.757736633841335,1.61457672169721,0,2.21703828199926,1.13694847062291,1.46668478797823,1.86719594352707,2.34690248288502,1.67506257441816,0.476087281772027,2.92700471786698,0.945810864637146,1.32878813789265,2.71073106717728,3.11340297959902,1.55416483679306,3.03763023021174,3.01582567878545,4.35124547054968,4.91764273019036,4.41498794087572,1.76605648986571,1.99259867206745,0.655739781506702,2.01976741763498,0.631016438832513,1.17131623288992,0.646270193198397,1.19484398976276,2.00518806674155,0.566153061577665,2.02405350837447,2.04579100537918,1.58115111178609,0.963963949265421,2.12910127812403,1.95872164033981,1.79175655288934,1.31976098378028,0,1.45668381692989,0.604647113929502,1.13163047853539,0.590603785761546,0.307435147943927,0.775284879504663,1.45413491791002,0.356497378384721,0.632073515871632,0,0,2.38307724027652,0.900305470156551,1.16422815404479,1.71469628025274,1.06404140185364,1.96205699362278,1.48094118541909,0.608929898229199,0.469343416127421,1.48282449604674,0.661585194164886,1.15420377059036,0.807322133479528,1.68876189798836,0.477489376012546,0.820704498725306,0.291480836629851,0.927126510052548,1.70870880797853,1.23832120777933,1.85194527369712,1.69531611304222,1.0935538217682,1.60144721244566,2.37969801991397,2.37917468950219,1.65839968565309,0.954670618015114,1.26534397432454,0.813277868507395,0.540026704109006,1.25452977608681,0.655087691238533,1.07891477107857,1.07449492442937,1.04702376793612,1.42576470620972,4.97071450469541,0.56369293868419,1.79419855252775,1.98550188548517,3.11121901350476,2.71235629303235,2.02747350588934,1.5256441023948,4.1665403150064,4.61381115473128,3.38217769156408,2.30424005006292,1.89606672376907,2.43270258348197,1.95150818613172,0.51968329191118,1.43221356533985,0.79472541912506,1.9231271923195,1.9199638532695,0.908698049533329,1.600342939755,1.20991422164209,0.779663045918019,1.25075394132428,0.935015217452552,0.453460767230423,1.10992976687032,0.986852422704233,0.335769232728157,1.54551675225752,1.12609485270709,1.09890974560359,0.857473516316263,1.00314420807073,1.6942555278512,0.460325236507177,1.14579102687879,1.54667864109319,0.685082519770642,0,2.70009000092722,2.2516060161211,0.453142408984205,1.03552062350364,1.03787347584177,1.19707462020309,1.19513524027894,0.486213434136588,2.30574478890781,1.65459157605013,1.77797382241292,1.85431551515005,1.92551525755089,1.26348605881899,1.77435509923168,0.754505365544305,2.43467919421694,2.30490548657529,2.64203157195821,0.952587382566147,3.01299247456624,2.70072908649187,2.47251540481984,2.50238164228475,2.74295401908332,2.8396128985494,2.14592570952589,1.59881058295561,2.25862512996793,2.28459441307527,2.0122077016005,3.15683653725411,2.03706170768793,0.561142271657738,2.13543032623513,3.15214343601803,2.04615521584845,2.47898945897546,2.3148793317737,1.24905288968973,3.50897412668113,1.07435527024149,0.57386499620653,1.76473135295612,3.01428186306548 | |||
|short_description=p2@Ppm1m | |||
}} | |||
Revision as of 16:42, 14 September 2013
| Short description: | p2@Ppm1m |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Ppm1m_5end |
| Coexpression cluster: | MCL_coexpression_mm9:3 |
| Association with transcript: | 0bp_to_ENSMUST00000140761_5end |
| EntrezGene: | Ppm1m |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| motile cell | 6.07e-09 | 54 |
| connective tissue cell | 1.11e-07 | 46 |
| mesenchymal cell | 1.11e-07 | 46 |
| Ontology term | p-value | n |
|---|---|---|
| connective tissue | 1.11e-07 | 46 |
| musculoskeletal system | 2.71e-07 | 32 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
