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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001048!2.13e-09!134;UBERON:0000922!8.62e-09!320;UBERON:0005423!1.13e-08!304;UBERON:0000468!6.82e-07!333
|tfbs_overrepresentation_for_novel_motifs=0.149902,2.15919,0.133309,0.178048,0.0709145,0.188081,0.254787,0.032132,2.88409,0.00174355,1.84485,0.24561,0.0322096,0.264234,0.572973,0,0.42315,0.0671461,0.0275029,0.11724,0.111207,0.9527,0.263535,0.070175,0.138033,0.285776,0.0250871,0.202945,0.0941661,0.0146267,0.192916,0.512187,0.0660956,0.0883171,0.0793793,0.263502,0.0618293,0.680922,0.430935,0.0410186,0.0689912,0.196576,0.867463,0.0801495,0.0252769,0.170437,0.355451,0.214351,0.00174536,5.09996,0.408111,0.307229,0.063174,0.641205,0.657376,0.743028,0.100694,0.664869,1.93918,0.268198,0.494318,0.314847,3.63404,0.398468,1.3955,0.433342,0.785371,1.12243,0.490165,0.979213,0.12178,0.0340869,0.00424418,0.6886,0.0208952,0.018158,0.0199002,0.346003,0.479091,0.113666,0.0344911,0.438213,0.31368,0.0300873,0.582029,0.000483541,0.000698422,0.0146563,0.359539,1.2816,0.851763,0.586575,0.523661,0.0737837,0.0506699,0.0436985,0.303029,0.526183,0.355664,0.0106182,0.061865,0.511936,0.625103,0.408622,0.407717,0.196264,0.459578,0.211422,0.116526,0.112248,0.44617,0.626748,0.114328,0.225582,0.858505,0.068143,0.00106265,0.180644,0.424276,8.28511,0.693645,0.380657,0.287218,2.47203,0.910454,0.482363,0.261058,0.517583,0.783932,0.0752496,0.609469,2.24425,0.75595,0.280468,0.879201,0.00351968,0.15539,0.197578,0.832159,1.64606,1.25025,0.789841,0.296788,0.521565,0.402166,0.196898,0.358053,1.60668,0.156941,0.0717633,0.0151559,0.0028093,0.642658,0.0459937,0.27974,0.718834,0.30804,0.085296,0.14831,0.155206,0.841238,0.581248,0.482758,0.143905,0.39934,0.273933,5.8051,0.244407,0.000103919
|tfbs_overrepresentation_jaspar=MA0003.1;0.000948649,MA0004.1;0.178381,MA0006.1;0.0769247,MA0007.1;0.168178,MA0009.1;0.535932,MA0014.1;9.60776e-05,MA0017.1;0.0906268,MA0019.1;0.376509,MA0024.1;0.496718,MA0025.1;0.751694,MA0027.1;2.14278,MA0028.1;0.0821841,MA0029.1;0.477444,MA0030.1;0.483253,MA0031.1;0.451927,MA0038.1;0.285714,MA0040.1;0.547233,MA0041.1;0.129017,MA0042.1;0.384176,MA0043.1;0.624178,MA0046.1;0.568473,MA0048.1;0.0534545,MA0050.1;0.205672,MA0051.1;0.2928,MA0052.1;0.554531,MA0055.1;0.000616504,MA0056.1;0,MA0057.1;0.700684,MA0058.1;0.117003,MA0059.1;0.124358,MA0060.1;0.0417645,MA0061.1;0.0537092,MA0063.1;0,MA0066.1;0.277072,MA0067.1;0.857286,MA0068.1;0.133212,MA0069.1;0.554839,MA0070.1;0.54606,MA0071.1;0.20507,MA0072.1;1.33116,MA0073.1;0.342665,MA0074.1;0.249359,MA0076.1;0.101055,MA0077.1;0.518913,MA0078.1;0.319336,MA0081.1;0.138626,MA0083.1;0.623446,MA0084.1;1.1752,MA0087.1;0.583879,MA0088.1;0.00391907,MA0089.1;0,MA0090.1;0.15538,MA0091.1;0.187483,MA0092.1;0.155586,MA0093.1;0.0864726,MA0095.1;0,MA0098.1;0,MA0100.1;0.2406,MA0101.1;0.12981,MA0103.1;0.319254,MA0105.1;0.0188009,MA0106.1;0.325663,MA0107.1;0.093115,MA0108.2;0.395878,MA0109.1;0,MA0111.1;0.164756,MA0113.1;0.302851,MA0114.1;0.0527257,MA0115.1;0.626759,MA0116.1;2.56476,MA0117.1;0.597086,MA0119.1;0.130171,MA0122.1;0.615314,MA0124.1;0.80652,MA0125.1;0.736412,MA0130.1;0,MA0131.1;0.372683,MA0132.1;0,MA0133.1;0,MA0135.1;0.657882,MA0136.1;0.264624,MA0139.1;0.299978,MA0140.1;0.240513,MA0141.1;0.10748,MA0142.1;0.439269,MA0143.1;0.31603,MA0144.1;0.0540242,MA0145.1;0.00476048,MA0146.1;0.000186064,MA0147.1;0.0593437,MA0148.1;0.189643,MA0149.1;0.133214,MA0062.2;0.0201154,MA0035.2;0.244063,MA0039.2;2.73825e-07,MA0138.2;0.366012,MA0002.2;0.129512,MA0137.2;0.105829,MA0104.2;0.0366484,MA0047.2;0.285109,MA0112.2;0.766028,MA0065.2;0.00480025,MA0150.1;0.168102,MA0151.1;0,MA0152.1;0.285194,MA0153.1;0.67335,MA0154.1;3.83932,MA0155.1;0.0064214,MA0156.1;0.100572,MA0157.1;0.411541,MA0158.1;0,MA0159.1;0.0638985,MA0160.1;0.191754,MA0161.1;0,MA0162.1;0.000311535,MA0163.1;1.65449,MA0164.1;0.264905,MA0080.2;0.0935932,MA0018.2;0.272436,MA0099.2;0.360735,MA0079.2;3.12199e-06,MA0102.2;1.22663,MA0258.1;0.401444,MA0259.1;0.0546944,MA0442.1;0
}}

Latest revision as of 15:14, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:69548262..69548270,-p@chr11:69548262..69548270
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Mm9::chr11:69548353..69548362,-p@chr11:69548353..69548362
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Mm9::chr11:69548394..69548405,-p@chr11:69548394..69548405
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Mm9::chr11:69548410..69548421,-p@chr11:69548410..69548421
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Mm9::chr11:69548425..69548445,-p@chr11:69548425..69548445
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Mm9::chr11:69548449..69548461,-p@chr11:69548449..69548461
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Mm9::chr11:69548477..69548489,-p@chr11:69548477..69548489
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Mm9::chr11:69548520..69548525,-p@chr11:69548520..69548525
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Mm9::chr11:69548546..69548555,-p@chr11:69548546..69548555
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Mm9::chr11:69548582..69548594,-p@chr11:69548582..69548594
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Mm9::chr11:69548679..69548693,-p@chr11:69548679..69548693
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Mm9::chr11:69548734..69548746,-p@chr11:69548734..69548746
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Mm9::chr11:69548786..69548797,-p@chr11:69548786..69548797
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Mm9::chr11:69548828..69548839,-p@chr11:69548828..69548839
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Mm9::chr11:69548858..69548869,-p@chr11:69548858..69548869
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Mm9::chr11:69548877..69548888,-p@chr11:69548877..69548888
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Mm9::chr11:69548890..69548901,-p@chr11:69548890..69548901
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Mm9::chr11:69548970..69549012,-p@chr11:69548970..69549012
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Mm9::chr7:26509752..26509854,-p@chr7:26509752..26509854
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Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
primordium2.13e-09134
embryo8.62e-09320
developing anatomical structure1.13e-08304
multi-cellular organism6.82e-07333


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.000948649
MA0004.10.178381
MA0006.10.0769247
MA0007.10.168178
MA0009.10.535932
MA0014.19.60776e-05
MA0017.10.0906268
MA0019.10.376509
MA0024.10.496718
MA0025.10.751694
MA0027.12.14278
MA0028.10.0821841
MA0029.10.477444
MA0030.10.483253
MA0031.10.451927
MA0038.10.285714
MA0040.10.547233
MA0041.10.129017
MA0042.10.384176
MA0043.10.624178
MA0046.10.568473
MA0048.10.0534545
MA0050.10.205672
MA0051.10.2928
MA0052.10.554531
MA0055.10.000616504
MA0056.10
MA0057.10.700684
MA0058.10.117003
MA0059.10.124358
MA0060.10.0417645
MA0061.10.0537092
MA0063.10
MA0066.10.277072
MA0067.10.857286
MA0068.10.133212
MA0069.10.554839
MA0070.10.54606
MA0071.10.20507
MA0072.11.33116
MA0073.10.342665
MA0074.10.249359
MA0076.10.101055
MA0077.10.518913
MA0078.10.319336
MA0081.10.138626
MA0083.10.623446
MA0084.11.1752
MA0087.10.583879
MA0088.10.00391907
MA0089.10
MA0090.10.15538
MA0091.10.187483
MA0092.10.155586
MA0093.10.0864726
MA0095.10
MA0098.10
MA0100.10.2406
MA0101.10.12981
MA0103.10.319254
MA0105.10.0188009
MA0106.10.325663
MA0107.10.093115
MA0108.20.395878
MA0109.10
MA0111.10.164756
MA0113.10.302851
MA0114.10.0527257
MA0115.10.626759
MA0116.12.56476
MA0117.10.597086
MA0119.10.130171
MA0122.10.615314
MA0124.10.80652
MA0125.10.736412
MA0130.10
MA0131.10.372683
MA0132.10
MA0133.10
MA0135.10.657882
MA0136.10.264624
MA0139.10.299978
MA0140.10.240513
MA0141.10.10748
MA0142.10.439269
MA0143.10.31603
MA0144.10.0540242
MA0145.10.00476048
MA0146.10.000186064
MA0147.10.0593437
MA0148.10.189643
MA0149.10.133214
MA0062.20.0201154
MA0035.20.244063
MA0039.22.73825e-07
MA0138.20.366012
MA0002.20.129512
MA0137.20.105829
MA0104.20.0366484
MA0047.20.285109
MA0112.20.766028
MA0065.20.00480025
MA0150.10.168102
MA0151.10
MA0152.10.285194
MA0153.10.67335
MA0154.13.83932
MA0155.10.0064214
MA0156.10.100572
MA0157.10.411541
MA0158.10
MA0159.10.0638985
MA0160.10.191754
MA0161.10
MA0162.10.000311535
MA0163.11.65449
MA0164.10.264905
MA0080.20.0935932
MA0018.20.272436
MA0099.20.360735
MA0079.23.12199e-06
MA0102.21.22663
MA0258.10.401444
MA0259.10.0546944
MA0442.10
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