FFCP PHASE1:Hg19::chr1:92950138..92950159,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2672 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4237 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=79bp_to_ENST00000483490_5end | |||
|coexpression_cluster_id=C44 | |||
|description=CAGE_peak_4_at_GFI1_5end | |||
|id=chr1:92950138..92950159,- | |||
|ontology_enrichment_celltype=CL:0000988!3.81e-19!182;CL:0000542!7.94e-19!53;CL:0000051!7.94e-19!53;CL:0000037!1.94e-18!172;CL:0000566!1.94e-18!172;CL:0000838!8.36e-18!52;CL:0000625!6.73e-15!11;CL:0002032!1.12e-14!165;CL:0000837!1.12e-14!165;CL:0000791!3.86e-13!18;CL:0000789!3.86e-13!18;CL:0002420!3.86e-13!18;CL:0002419!3.86e-13!18;CL:0000790!3.86e-13!18;CL:0000084!1.50e-12!25;CL:0000827!1.50e-12!25;CL:0000738!1.28e-09!140;CL:0002031!4.76e-08!124;CL:0002087!1.78e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000784;1.52e-13;3!CL:0000625;9.11e-12;11!CL:0000791;2.68e-09;18!CL:0000789;2.68e-09;18!CL:0002419;2.68e-09;18!CL:0000097;2.01e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.88e-24,177;CL:0000037,3.89e-21,168;CL:0002032,1.63e-16,161;CL:0000837,1.63e-16,161;CL:0000784,1.53e-13,3;CL:0000625,1.24e-11,11;CL:0000542,8.94e-11,53;CL:0000051,8.94e-11,53;CL:0000838,2.18e-09,52;CL:0000791,3.30e-09,18;CL:0000789,3.30e-09,18;CL:0002420,3.30e-09,18;CL:0002419,3.30e-09,18;CL:0000790,3.30e-09,18;CL:0000738,3.49e-09,136;CL:0000097,1.69e-07,5;CL:0002028,1.69e-07,5;CL:0000763,2.83e-07,108;CL:0000049,2.83e-07,108;CL:0002031,8.98e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000790;2.68e-09;18 | |||
|ontology_enrichment_disease=DOID:1240!6.95e-17!39;DOID:2531!3.82e-16!51;DOID:0060083!3.82e-16!51;DOID:8692!1.54e-12!31 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.71e-17;31!DOID:1240;3.88e-17;39!DOID:2531;3.69e-12;51!DOID:0060083;3.69e-12;51 | |||
|ontology_enrichment_disease_v019_2=DOID:1240,2.67e-21,39;DOID:2531,4.43e-20,51;DOID:0060083,4.43e-20,51;DOID:8692,3.55e-18,31;DOID:0050686,2.82e-07,137 | |||
|ontology_enrichment_uberon=UBERON:0000178!8.02e-08!15;UBERON:0000179!8.02e-08!15;UBERON:0000463!8.02e-08!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.22e-08;2!UBERON:0005058;2.22e-08;2!UBERON:0009113;2.22e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.86e-09,4;UBERON:0005058,4.86e-09,4;UBERON:0009113,4.86e-09,4;UBERON:0003295,4.86e-09,4;UBERON:0005562,4.86e-09,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98674854944673,1.72411237844886,1.96776953284198,0,0,0.154816123316076,0,0,0,0,0,1.17440175733939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0.889509253863555,0,0,0,0,0.954053754535364,0,0,0,0,1.68152568894461,0.526768169550154,0,0,0.411202997999018,0.501559486172034,0.651844533267181,0.473447805734733,0,1.78256731016278,0,0.221533894583621,0.541607727530031,0.896639238079726,1.30059347559878,1.31550323682941,1.65810010671509,0.289803085735052,0,0,0,0.566546713487831,0,0.68725489096526,0.506039384039006,0.637130828648193,1.30216690771284,0.950452044448374,0.752875595388864,0.639933055772092,2.49861453104692,1.18388626022008,1.64225599384209,1.20964045934839,1.87208137048455,0.724122019413995,0,0.670700859703636,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0.174129737299267,0,13.1169843367938,14.2998727695032,15.9726725571713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97316789473185,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55340458638356,1.86595303986695,0.720599767084807,1.51490920111656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.56919201590938,0.394061520403854,0.215627574859517,0.513372145118994,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0.507447609232169,1.52927441428475,0,0.476463550915578,0.411362273086194,0,0.540031437238115,0,0,0,0,1.85803175125719,1.15415370381156,0.853702120180969,0.637705090915289,0,0.5745161103971,3.59845090630601,2.921597462471,2.52717460302113,0.456469358066384,1.41011906195721,2.50634477090067,3.04725200042886,0.481764225311099,0,1.27753871307098,2.06103206853459,1.22896305723383,0.671028323677248,1.16794399198336,2.73543333562856,0,0,1.08182271390393,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0.20453736500431,2.09244169283818,0,0,0,3.06943422136123,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166211681900156,0,0,0,0,0,0,0,0.141353071433941,0,0,0.530745387020035,0.611030144933625,4.15129580152871,3.95404604628809,2.71497068714184,0,0,0,0.547364367646998,0,0,0,0,0,0.252746318513952,0,0.207376382794494,0,0,0.313932918407225,0,0,0,0,0,0.522355239482415,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.426905989478705,0.19980960958213,0,0,1.54435498075768,0,0.124252535565433,0,0,0,0,0,0,0,2.55493176133945,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0.494495150286999,0.0674035438541849,0.0984274815147488,2.11683330164461,0.795229689809303,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0.191915197319445,0,0,0,0,0,0,0,0.082092520749339,0,0.113312091520126,0,0,0,0,0,0,0.320362237703084,0.157204305099666,0,0.496166021811951,0,0.243585196761792,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,1.87333962322753,0.869526171664951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.537266523244462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.960225567247268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0.0642292250964595,0,0,0,0,0,0,0,0,0.353909170043221,0,0,0,0,0,0,0,1.56302802246618,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460935950223117,0,0,0,0,0,0,0,0,0,0,0,0,0.158013611732727,0.116241425368125,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,4.2109103423179,0,0,0,0,0.150962843566674,0.385870790539723,0,1.88126918544609,0,0,0,0,0,0,0.469919589899268,0.193373663920732,0,0,0,0,0,0.458729283404541,0,0,0.0679914901909147,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.61472274590015,1.73809200028402,0,0,0,0.217716747896961,0,0.5388164241167,0.215166616178029,0,0.162806537221949,0.426909383510862,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p4@GFI1 | |||
}} |
Revision as of 19:34, 10 January 2014
Short description: | p4@GFI1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GFI1_5end |
Coexpression cluster: | C44_Dendritic_CD19_CD133_granulocyte_acute_thymus_immature |
Association with transcript: | 79bp_to_ENST00000483490_5end |
EntrezGene: | GFI1 |
HGNC: | 4237 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.88e-24 | 177 |
hematopoietic stem cell | 3.89e-21 | 168 |
hematopoietic oligopotent progenitor cell | 1.63e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.63e-16 | 161 |
plasmacytoid dendritic cell | 1.53e-13 | 3 |
CD8-positive, alpha-beta T cell | 1.24e-11 | 11 |
lymphocyte | 8.94e-11 | 53 |
common lymphoid progenitor | 8.94e-11 | 53 |
lymphoid lineage restricted progenitor cell | 2.18e-09 | 52 |
mature alpha-beta T cell | 3.30e-09 | 18 |
alpha-beta T cell | 3.30e-09 | 18 |
immature T cell | 3.30e-09 | 18 |
mature T cell | 3.30e-09 | 18 |
immature alpha-beta T cell | 3.30e-09 | 18 |
leukocyte | 3.49e-09 | 136 |
mast cell | 1.69e-07 | 5 |
basophil mast progenitor cell | 1.69e-07 | 5 |
myeloid cell | 2.83e-07 | 108 |
common myeloid progenitor | 2.83e-07 | 108 |
hematopoietic lineage restricted progenitor cell | 8.98e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
thymus | 4.86e-09 | 4 |
hemolymphoid system gland | 4.86e-09 | 4 |
thymic region | 4.86e-09 | 4 |
pharyngeal gland | 4.86e-09 | 4 |
thymus primordium | 4.86e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
leukemia | 2.67e-21 | 39 |
hematologic cancer | 4.43e-20 | 51 |
immune system cancer | 4.43e-20 | 51 |
myeloid leukemia | 3.55e-18 | 31 |
organ system cancer | 2.82e-07 | 137 |