FFCP PHASE1:Hg19::chr1:236228417..236228446,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4811 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7821 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-8bp_to_ENST00000366595_5end | |||
|coexpression_cluster_id=C2574 | |||
|description=CAGE_peak_2_at_NID1_5end | |||
|id=chr1:236228417..236228446,- | |||
|ontology_enrichment_celltype=CL:0000055!3.34e-28!180;CL:0000057!2.55e-18!75;CL:0000222!7.10e-18!119;CL:0000183!2.16e-11!59;CL:0000115!2.98e-11!35;CL:0002078!2.05e-10!44;CL:0000680!4.84e-10!57;CL:0000056!4.84e-10!57;CL:0000355!4.84e-10!57;CL:0002139!9.93e-10!24;CL:0000187!1.46e-09!54;CL:0002620!8.54e-09!23;CL:0000213!1.36e-08!57;CL:0000215!1.36e-08!57;CL:0000393!2.39e-08!60;CL:0000211!2.39e-08!60;CL:0000136!7.58e-07!15;CL:0000071!7.89e-07!18;CL:0002546!7.89e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0002139;8.29e-10;24!CL:0000115;1.57e-09;36!CL:0002620;7.22e-09;23!CL:0000057;1.57e-08;73!CL:0002078;2.25e-07;45!CL:0000136;7.07e-07;13!CL:0000071;7.12e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.15e-19,76;CL:0000222,2.43e-18,121;CL:0000115,1.97e-11,36;CL:0002078,1.30e-10,45;CL:0000680,2.88e-10,58;CL:0000056,2.88e-10,58;CL:0000355,2.88e-10,58;CL:0002139,7.80e-10,24;CL:0000187,8.82e-10,55;CL:0002620,6.90e-09,23;CL:0000213,8.74e-09,58;CL:0000215,8.74e-09,58;CL:0000393,2.06e-08,61;CL:0000211,2.06e-08,61;CL:0000136,6.48e-07,15;CL:0000071,6.75e-07,18;CL:0002546,6.75e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002546;7.12e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!3.91e-17!143;UBERON:0000468!2.72e-16!659;UBERON:0002049!1.01e-15!79;UBERON:0007798!1.01e-15!79;UBERON:0000490!6.26e-15!138;UBERON:0003914!3.43e-14!118;UBERON:0004872!1.82e-13!84;UBERON:0001009!2.01e-13!113;UBERON:0004535!6.67e-13!110;UBERON:0000914!8.34e-13!83;UBERON:0002329!8.34e-13!83;UBERON:0003077!8.34e-13!83;UBERON:0003059!8.34e-13!83;UBERON:0007282!8.34e-13!83;UBERON:0009618!8.34e-13!83;UBERON:0007285!8.34e-13!83;UBERON:0002100!1.06e-12!216;UBERON:0004290!1.58e-12!70;UBERON:0000055!3.80e-12!69;UBERON:0000467!7.71e-12!625;UBERON:0000480!1.46e-11!626;UBERON:0000486!2.37e-11!82;UBERON:0000475!3.22e-11!365;UBERON:0002385!4.32e-11!63;UBERON:0001015!4.32e-11!63;UBERON:0000383!4.32e-11!63;UBERON:0001134!5.81e-11!61;UBERON:0002036!5.81e-11!61;UBERON:0003082!5.81e-11!61;UBERON:0000119!2.02e-10!312;UBERON:0000483!1.47e-09!309;UBERON:0001981!2.07e-09!60;UBERON:0007500!2.07e-09!60;UBERON:0004537!2.07e-09!60;UBERON:0006965!2.07e-09!60;UBERON:0000926!1.28e-08!448;UBERON:0004120!1.28e-08!448;UBERON:0006603!1.28e-08!448;UBERON:0000477!3.95e-08!286;UBERON:0002417!1.07e-07!61;UBERON:0000916!1.07e-07!61;UBERON:0000481!4.73e-07!347;UBERON:0003104!6.90e-07!238;UBERON:0009142!6.90e-07!238;UBERON:0001986!7.89e-07!18;UBERON:0004638!7.89e-07!18;UBERON:0004852!7.89e-07!18;UBERON:0002199!8.83e-07!45;UBERON:0002416!8.83e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0000055;3.65e-07;65!UBERON:0004638;7.12e-07;18!UBERON:0001986;7.12e-07;18!UBERON:0004852;7.12e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,4.79e-20,160;UBERON:0009142,4.79e-20,160;UBERON:0000490,3.13e-17,148;UBERON:0005256,4.94e-17,122;UBERON:0002049,2.77e-15,78;UBERON:0007798,2.77e-15,78;UBERON:0007503,7.95e-15,78;UBERON:0003914,4.03e-14,117;UBERON:0001009,4.22e-13,112;UBERON:0004872,4.31e-13,83;UBERON:0002329,8.71e-13,71;UBERON:0003059,8.71e-13,71;UBERON:0007282,8.71e-13,71;UBERON:0004290,8.71e-13,71;UBERON:0009618,8.71e-13,71;UBERON:0004535,1.41e-12,109;UBERON:0007524,1.64e-12,73;UBERON:0000926,2.23e-12,315;UBERON:0004120,2.23e-12,315;UBERON:0006603,2.23e-12,315;UBERON:0003077,3.59e-12,72;UBERON:0007285,3.59e-12,72;UBERON:0002100,5.24e-12,199;UBERON:0000055,9.52e-12,68;UBERON:0000486,1.00e-11,83;UBERON:0002385,2.49e-11,64;UBERON:0001015,2.49e-11,64;UBERON:0000383,2.49e-11,64;UBERON:0001134,3.37e-11,62;UBERON:0002036,3.37e-11,62;UBERON:0003082,3.37e-11,62;UBERON:0000119,3.65e-10,309;UBERON:0000483,2.63e-09,306;UBERON:0007500,5.72e-09,59;UBERON:0001981,5.72e-09,59;UBERON:0004537,5.72e-09,59;UBERON:0006965,5.72e-09,59;UBERON:0002417,1.89e-07,60;UBERON:0000916,1.89e-07,60;UBERON:0002199,6.21e-07,46;UBERON:0002416,6.21e-07,46;UBERON:0004638,6.75e-07,18;UBERON:0001986,6.75e-07,18;UBERON:0004852,6.75e-07,18 | |||
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| |||
|short_description=p2@NID1 | |||
}} |
Revision as of 00:55, 11 January 2014
Short description: | p2@NID1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NID1_5end |
Coexpression cluster: | C2574_Mesenchymal_Pericytes_Fibroblast_Adipocyte_Nucleus_Meningeal_stomach |
Association with transcript: | -8bp_to_ENST00000366595_5end |
EntrezGene: | NID1 |
HGNC: | 7821 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.15e-19 | 76 |
mesodermal cell | 2.43e-18 | 121 |
endothelial cell | 1.97e-11 | 36 |
meso-epithelial cell | 1.30e-10 | 45 |
muscle precursor cell | 2.88e-10 | 58 |
myoblast | 2.88e-10 | 58 |
multi-potent skeletal muscle stem cell | 2.88e-10 | 58 |
endothelial cell of vascular tree | 7.80e-10 | 24 |
muscle cell | 8.82e-10 | 55 |
skin fibroblast | 6.90e-09 | 23 |
lining cell | 8.74e-09 | 58 |
barrier cell | 8.74e-09 | 58 |
electrically responsive cell | 2.06e-08 | 61 |
electrically active cell | 2.06e-08 | 61 |
fat cell | 6.48e-07 | 15 |
blood vessel endothelial cell | 6.75e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.75e-07 | 18 |