FFCP PHASE1:Hg19::chr15:59908653..59908680,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9245 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4205 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=20bp_to_ENST00000559626_5end | |||
|coexpression_cluster_id=C94 | |||
|description=CAGE_peak_4_at_GCNT3_5end | |||
|id=chr15:59908653..59908680,+ | |||
|ontology_enrichment_celltype=CL:0002076!2.16e-09!43;CL:0000223!4.74e-09!59 | |||
|ontology_enrichment_celltype_v019=CL:0000167;1.82e-13;1!CL:0000164;1.82e-13;1!CL:0000502;1.82e-13;1!CL:0000172;1.82e-13;1!CL:0000173;1.82e-13;1!CL:0002553;2.46e-13;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,1.82e-13,1;CL:0000164,1.82e-13,1;CL:0000502,1.82e-13,1;CL:0000172,1.82e-13,1;CL:0000173,1.82e-13,1;CL:0002351,1.82e-13,1;CL:0002553,2.32e-13,1 | |||
|ontology_enrichment_development_v019=CL:0002351;1.82e-13;1!UBERON:0008801;6.42e-13;1 | |||
|ontology_enrichment_disease=DOID:299!6.92e-08!25;DOID:305!2.75e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:4430;1.82e-13;1!DOID:0050619;3.33e-13;1!DOID:1357;3.33e-13;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4430,1.82e-13,1;DOID:0050619,3.33e-13,1;DOID:1357,3.33e-13,1 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.93e-20!169;UBERON:0000925!1.93e-20!169;UBERON:0006595!1.93e-20!169;UBERON:0004921!7.20e-17!129;UBERON:0004185!7.20e-17!129;UBERON:0001007!2.79e-16!155;UBERON:0001555!2.79e-16!155;UBERON:0007026!2.79e-16!155;UBERON:0001004!1.34e-12!72;UBERON:0000077!2.52e-11!130;UBERON:0007023!5.04e-11!115;UBERON:0000464!1.47e-09!104;UBERON:0000161!2.92e-09!35;UBERON:0000466!3.47e-09!126;UBERON:0005409!4.56e-09!35;UBERON:0000160!5.54e-09!27;UBERON:0001041!1.40e-08!98;UBERON:0000065!2.17e-08!53;UBERON:0000166!3.38e-08!21;UBERON:0001044!3.34e-07!6;UBERON:0003293!3.34e-07!6;UBERON:0003294!3.34e-07!6;UBERON:0010047!3.34e-07!6;UBERON:0000167!3.34e-07!6;UBERON:0003127!9.16e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0003127;2.20e-24;2!UBERON:0001764;3.33e-13;1!UBERON:0001825;3.33e-13;1!UBERON:0001831;6.42e-13;1!UBERON:0001567;6.42e-13;1!UBERON:0000059;4.64e-10;11!UBERON:0001044;1.17e-08;6!UBERON:0003293;1.17e-08;6!UBERON:0003294;1.17e-08;6!UBERON:0010047;1.17e-08;6!UBERON:0003408;1.17e-08;6!UBERON:0000167;1.17e-08;6!UBERON:0004921;1.13e-07;33!UBERON:0003126;1.23e-07;7!UBERON:0001005;1.23e-07;7!UBERON:0000341;4.29e-07;2!UBERON:0001829;4.29e-07;2!UBERON:0004089;4.29e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003127,1.64e-24,2;UBERON:0001764,3.33e-13,1;UBERON:0001825,3.33e-13,1;UBERON:0001831,1.09e-12,1;UBERON:0001567,1.09e-12,1;UBERON:0008801,1.09e-12,1;UBERON:0000059,4.87e-10,11;UBERON:0001044,1.47e-08,6;UBERON:0003293,1.47e-08,6;UBERON:0003294,1.47e-08,6;UBERON:0010047,1.47e-08,6;UBERON:0000167,1.47e-08,6;UBERON:0004921,1.64e-08,118;UBERON:0003126,1.13e-07,7;UBERON:0001005,1.13e-07,7;UBERON:0000341,4.42e-07,2;UBERON:0001829,5.60e-07,2;UBERON:0004089,5.60e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.0644543914743,0,0,0,1.80479845162965,0.15403067420883,0,0,0.422206515571503,0,0,0,0,0,0,0.764628819135115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0.384380134730212,0.510450849978337,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0.796991953004279,0.552567831062295,0,0,0,0,0,1.61119057208048,0,0.197286811273867,0,0,0,0,0,0,0,0,0.1137934482855,0.762760950878299,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0.557694977114413,0.923403102045565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0,0,1.99052386215701,0.0884575645033392,1.22206028986725,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0.451961481561065,0,0,0,0,0,0.426905989478705,0,0.288180834308212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,2.82697373250422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,5.60399523799829,0,0,0.128458450192919,0,0,0,0,0,0,0,0,0.11796972334774,0.183428598521679,0,0,0,0,0.150420656698515,0,0,0,0,0.591424344868181,0,0,0,0,0,1.09651553371436,0,0.175871244359621,0.383287282918786,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0.078493092850514,0.157115589916002,1.12108865325516,0,0,0,0.0714765441766563,0,0,0,0,0,0.17071847709395,0,1.29068207646083,0,0,0,1.60374807980835,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0.11294608203896,0,0.603851374266694,0.540219106755613,0.437119121007915,57.8490274524673,0,25.217390539874,0,0,0,0,0,0,0,11.7845599479734,0,0,0,0.458729283404541,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,1.49263787330687,0.23806443146374,0.0645889098360061,0,0,0.0636471582781649,0,0.217716747896961,0.684466602170562,0.875576689189638,3.22749924267044,1.66330178273007,0,0,0,0.538951212639521,0,0.122241444182866,0,0.665756774185513,0,0 | |||
|short_description=p4@GCNT3 | |||
}} |
Revision as of 23:53, 11 January 2014
Short description: | p4@GCNT3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GCNT3_5end |
Coexpression cluster: | C94_smallcell_adrenal_lung_nonsmall_small_somatostatinoma_teratocarcinoma |
Association with transcript: | 20bp_to_ENST00000559626_5end |
EntrezGene: | GCNT3 |
HGNC: | 4205 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 1.82e-13 | 1 |
enteroendocrine cell | 1.82e-13 | 1 |
type D enteroendocrine cell | 1.82e-13 | 1 |
somatostatin secreting cell | 1.82e-13 | 1 |
pancreatic D cell | 1.82e-13 | 1 |
progenitor cell of endocrine pancreas | 1.82e-13 | 1 |
lung fibroblast | 2.32e-13 | 1 |
Ontology term | p-value | n |
---|---|---|
open tracheal system trachea | 1.64e-24 | 2 |
maxillary sinus | 3.33e-13 | 1 |
paranasal sinus | 3.33e-13 | 1 |
parotid gland | 1.09e-12 | 1 |
cheek | 1.09e-12 | 1 |
parotid gland primordium | 1.09e-12 | 1 |
large intestine | 4.87e-10 | 11 |
saliva-secreting gland | 1.47e-08 | 6 |
gland of oral region | 1.47e-08 | 6 |
gland of foregut | 1.47e-08 | 6 |
oral gland | 1.47e-08 | 6 |
oral cavity | 1.47e-08 | 6 |
subdivision of digestive tract | 1.64e-08 | 118 |
trachea | 1.13e-07 | 7 |
respiratory airway | 1.13e-07 | 7 |
throat | 4.42e-07 | 2 |
major salivary gland | 5.60e-07 | 2 |
midface | 5.60e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
somatostatinoma | 1.82e-13 | 1 |
paranasal sinus cancer | 3.33e-13 | 1 |
maxillary sinus cancer | 3.33e-13 | 1 |