FFCP PHASE1:Hg19::chr20:58508702..58508728,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10388 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11490 | |||
|TSSclassifier=strong | |||
|UniProt=Q9BX26,A2A2M9 | |||
|association_with_transcript=0bp_to_ENST00000357552,ENST00000425931_5end | |||
|description=CAGE_peak_3_at_SYCP2_5end | |||
|id=chr20:58508702..58508728,- | |||
|ontology_enrichment_celltype=CL:0000791!4.34e-09!18;CL:0000789!4.34e-09!18;CL:0002420!4.34e-09!18;CL:0002419!4.34e-09!18;CL:0000790!4.34e-09!18 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.71e-07;18!CL:0000789;1.71e-07;18!CL:0002419;1.71e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.62e-07,18;CL:0000789,1.62e-07,18;CL:0002420,1.62e-07,18;CL:0002419,1.62e-07,18;CL:0000790,1.62e-07,18 | |||
|ontology_enrichment_development_v019=CL:0000790;1.71e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:299;1.07e-10;25!DOID:5093;1.04e-09;4!DOID:1612;1.04e-09;4!DOID:1325;8.98e-09;7!DOID:3904;8.98e-09;7!DOID:3905;1.03e-08;9!DOID:0050615;3.51e-08;16!DOID:4362;6.30e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.20e-15,106;DOID:0050687,6.70e-14,143;DOID:299,5.57e-11,25;DOID:5093,7.58e-10,4;DOID:1612,7.58e-10,4;DOID:162,5.15e-09,235;DOID:1325,1.02e-08,7;DOID:3904,1.02e-08,7;DOID:3905,1.06e-08,9;DOID:14566,1.36e-08,239;DOID:0050615,3.76e-08,16;DOID:4362,8.28e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.65e-14!115;UBERON:0001049!8.73e-08!57;UBERON:0005068!8.73e-08!57;UBERON:0006241!8.73e-08!57;UBERON:0007135!8.73e-08!57;UBERON:0002020!1.50e-07!34;UBERON:0003528!1.50e-07!34;UBERON:0001893!1.63e-07!34;UBERON:0002616!3.61e-07!59;UBERON:0002791!4.02e-07!33;UBERON:0002780!5.49e-07!41;UBERON:0001890!5.49e-07!41;UBERON:0006240!5.49e-07!41;UBERON:0001869!6.78e-07!32;UBERON:0001950!9.71e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002075;7.26e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002075,6.84e-07,18 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0,0,0.200544447470142,0.217010870715852,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0.587237189370939,0.382273228125229,0,0.560508562981536,0,1.180258620683,0.393010762749165,1.23360899399706,0.83593247695339,0.32592226663359,0.473447805734733,0,1.33692548262208,1.17842362989935,0.443067789167242,0.812411591295047,0.512365278902701,1.04047478047903,0.986627427622057,1.10540007114339,1.73881851441031,0.444859689486181,0,1.04535523804977,0.906474741580529,1.53288197440768,0.68725489096526,1.51811815211702,1.27426165729639,1.95325036156926,0.950452044448374,0.752875595388864,0.895906278080929,1.24930726552346,0.473554504088034,0.821127996921047,1.00803371612366,0,1.73789284659359,0,0,0,0.722878304769133,0,0.144846518960824,0,0,0.0945348171640679,0,0.175669571386252,4.38779902917337,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0.247266929278557,0,0,0.336672227908132,0.125118519871964,0,0,0,0.300476117813194,0,0,0.213557388818567,0.211931901159562,0,0.103052529238439,0.257640540045629,0,1.0126579934476,0,0,0.184099797284599,0.161646056818812,1.06502877754984,0.10075209822764,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,3.44367627920718,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,1.58040879591855,2.57545848628462,0.492434012174795,0,0,0,0,0,0.53735113621709,0,0,0.492663237895943,0.352193736052904,0.621984346622316,0.144119953416961,1.00993946741104,0.825472625798197,0,0,0,0.411309970813294,0,0,0.112131084345361,0,0.1466765716419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.788123040807709,0.215627574859517,0.641715181398742,0,0,0,0,0,0,2.99161459204025,0.414415513436035,0,0,0,0,0.356857977594324,0,0,0,0,0,0,0,0.0868836144680828,0,0.343143423810856,0.413536052245775,0.431428401637234,1.17400313583789,0,0,0.30239029332968,0,0.61384789315225,0,0,0,0,0,0,0,0,0,0,4.10922128611516,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0.328014645699706,0.325378394664303,0.206082023295445,2.65551447973196,4.70304149547352,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0.470719003883896,0,0,0,0,0.507447609232169,0.764637207142375,0,0.238231775457789,1.23408681925858,0,0,0,2.56377770705936,1.92495971052672,0,0,0,0,0.956557636372934,0,0,0,3.57084134302011,0,0,0,0,0,0,0.201799707191048,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,5.21850243522908,0,0,0.23874448473769,1.18785872333055,0,0.994147647766298,0.140669416410513,0,0,0.211125408127993,0,0.276283915531148,5.03865495708552,0,0,0,0,1.07412704805365,0,0.0986434056369336,0,0,0,0.927680981618513,0,5.4689829827899,5.07267999977935,0,8.53450862141247,2.03402920234213,8.50995654364571,0,0,0,0,0.120596438625408,4.5774520895125,0.884634079449797,0.886642856860642,0.219385397153973,0,1.11538995422883,0.153900517007594,0.569710279235006,0,0,2.49888955420619,0.31900115973192,0,0,0,0,0,0,0,0.167821586975843,0.75901493089674,0.158936578980379,3.37596903244843,13.3850902690501,5.79547592879157,0,0,0.353830258013357,0,0,0,0.104421949505455,0.202203398942031,0.802577647298789,0,0,1.56531695145672,0,0,0,0.30607276163049,0.126373159256976,0.150323419414493,0,2.65861549082874,2.64793564700399,2.5114633472578,2.38944859545918,1.70765727617876,0,0,0,4.52707874218093,0.34945333648406,6.53546923392143,0,0,0,0.290967049465258,0,0.225980740780532,0.548167698587004,0,0.759729551470544,17.7951758288671,2.32460578729448,0.640358984218058,1.79828648623917,0,1.37443915399099,0,0,0.248505071130865,0.235694034616795,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,1.11712960508902,0.229160424011684,0,1.99679000498991,0.858452096273142,0.669514372325618,0.604651252380536,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0.674921674654501,0,0.668245123238271,0,0.394028536495991,0.314727528809989,1.16160370171347,0,1.72723677587501,0,0.662091970365432,0,0,0,0,1.19730191562487,0.738832686744051,0,4.98573202688553,0,0,0.517131825446202,0.26446520348538,0,0,0.106787412567695,0.471612915298998,0.414239055347196,1.48849806543585,0,0,0,0,0.2506898940227,0.306345576763462,0,5.0257310800075,0,0.366078794705889,0.625954653532499,0,0.221858103073705,0.372578417648301,0,0,3.33628058591625,1.14186133417987,0.235265819698172,0,0,0.149254802886874,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,2.88929745610955,0,0,2.26705925512272,0.463044948647668,1.95789363605174,0,0,2.41212454536578,0.176689145945881,0,0,0,0,0,0.276516872303462,0.389720617678777,0,0.490696182767533,0,0,0,0,1.06691729694141,0,0,1.10463570151104,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385375350578757,1.41696576325585,1.27707087245721,0.615349092722265,0,0.414943514785307,0.645902582527404,0,0,0,0,0,0,0,0,0,0.40341013740704,0.781514011233092,0,0,8.57565300058863,0.607838261565552,0.781078098613847,0.413373593002368,0.380494861163441,0.546974809018219,0.548257766857182,0,0,0,0,0,0,0.682986574053893,0.266107110487916,0,0,0.951576261675644,0.394636641377094,0.709163045303809,0.222462803784138,0.549451649953598,0.157115589916002,0,0.913158720509496,0,0.9555033757741,0.0714765441766563,0,0,0,0,0,0,0,0.430227358820278,0,0,0,3.6657098967048,0.62041277132864,1.91107787795487,0.223710863595585,0,0.243835849964539,0,0.205325613712494,0,2.4285549652957,6.31636551347685,0,4.87572372188031,5.19551977379216,0,5.1327366812669,0,0.655678681511872,0,0,0,0.392616934229891,0,0,0,0.281951753939561,0.0644578879735772,0,1.96409332466223,0,0,0,0,0.716697915757256,0,0.135982980381829,0,0.5290268405154,0,0.462175628631418,0,0,0,0,0.305966489225945,2.13773924212448,0.36757959813938,3.50990555009325,19.626682838524,17.953596720464,0.829169439458779,0.20686599172379,0.213233981900981,0.714193294391221,0.258355639344024,0.620747142958579,0,0.12729431655633,1.0105859447911,0,0,0.404112318087525,0.430333232356058,0.665320713092027,2.19788825249631,7.89782359495094,0,0,2.34640942403454,0,1.62758471326295,0,0,0 | |||
|short_description=p3@SYCP2 | |||
}} |
Revision as of 12:34, 21 January 2014
Short description: | p3@SYCP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SYCP2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000357552, ENST00000425931_5end |
EntrezGene: | SYCP2 |
HGNC: | 11490 |
UniProt: | Q9BX26A2A2M9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.62e-07 | 18 |
alpha-beta T cell | 1.62e-07 | 18 |
immature T cell | 1.62e-07 | 18 |
mature T cell | 1.62e-07 | 18 |
immature alpha-beta T cell | 1.62e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
viscus | 6.84e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.20e-15 | 106 |
cell type cancer | 6.70e-14 | 143 |
adenocarcinoma | 5.57e-11 | 25 |
thoracic cancer | 7.58e-10 | 4 |
breast cancer | 7.58e-10 | 4 |
cancer | 5.15e-09 | 235 |
bronchus cancer | 1.02e-08 | 7 |
bronchogenic carcinoma | 1.02e-08 | 7 |
lung carcinoma | 1.06e-08 | 9 |
disease of cellular proliferation | 1.36e-08 | 239 |
respiratory system cancer | 3.76e-08 | 16 |
cervical cancer | 8.28e-08 | 5 |