FFCP PHASE1:Hg19::chr3:193853927..193853944,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3280 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5192 | |||
|TSSclassifier=strong | |||
|UniProt=Q14469 | |||
|association_with_transcript=0bp_to_ENST00000232424,ENST00000476918,NM_005524,uc003ftq.1,uc011bst.1_5end | |||
|description=CAGE_peak_1_at_HES1_5end | |||
|id=chr3:193853927..193853944,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.46e-23!254;CL:0000223!3.30e-14!59;CL:0002076!2.05e-10!43;CL:0002057!1.15e-07!42;CL:0000860!3.56e-07!45 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.07e-10;33!CL:0002057;4.07e-10;33!CL:0002076;8.36e-09;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.25e-23,253;CL:0000223,4.66e-15,58;CL:0002076,3.01e-11,42;CL:0000860,1.17e-07,42;CL:0002057,1.17e-07,42 | |||
|ontology_enrichment_development_v019=CL:0000223;2.75e-08;58!UBERON:0003104;8.41e-07;31 | |||
|ontology_enrichment_disease=DOID:305!5.69e-14!106;DOID:0050687!1.86e-13!143;DOID:1749!4.65e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.52e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.85e-14,106;DOID:0050687,1.77e-13,143;DOID:1749,4.56e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0000468!1.42e-11!659;UBERON:0000922!3.13e-11!612;UBERON:0000062!8.36e-11!511;UBERON:0000466!2.32e-10!126;UBERON:0002050!4.57e-10!605;UBERON:0005423!4.57e-10!605;UBERON:0000923!7.21e-10!604;UBERON:0005291!7.21e-10!604;UBERON:0006598!7.21e-10!604;UBERON:0002532!7.21e-10!604;UBERON:0000467!1.98e-09!625;UBERON:0000480!3.20e-09!626;UBERON:0001048!9.61e-09!168;UBERON:0005177!1.58e-08!107;UBERON:0004921!2.97e-08!129;UBERON:0004185!2.97e-08!129;UBERON:0004119!7.94e-08!169;UBERON:0000925!7.94e-08!169;UBERON:0006595!7.94e-08!169;UBERON:0005911!1.22e-07!82;UBERON:0001007!3.33e-07!155;UBERON:0001555!3.33e-07!155;UBERON:0007026!3.33e-07!155;UBERON:0001041!6.48e-07!98;UBERON:0005172!7.97e-07!55;UBERON:0005173!7.97e-07!55;UBERON:0000464!9.14e-07!104 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000922,1.41e-11,592;UBERON:0005423,5.52e-10,581;UBERON:0005177,1.73e-09,101;UBERON:0004921,2.95e-08,118;UBERON:0002050,4.19e-08,564;UBERON:0001048,7.35e-08,160;UBERON:0000923,1.05e-07,560;UBERON:0010316,1.05e-07,560;UBERON:0005291,1.05e-07,560;UBERON:0006598,1.05e-07,560;UBERON:0010317,1.05e-07,560;UBERON:0002532,1.05e-07,560;UBERON:0004119,1.10e-07,160;UBERON:0000925,1.10e-07,160;UBERON:0006595,1.10e-07,160;UBERON:0005911,1.11e-07,82;UBERON:0005172,1.95e-07,54;UBERON:0005173,1.95e-07,54;UBERON:0001007,2.19e-07,145;UBERON:0001555,2.19e-07,145;UBERON:0007026,2.19e-07,145;UBERON:0009569,4.59e-07,112;UBERON:0001041,5.64e-07,87 | |||
|phase1_expression=37.2440677504641,17.9844440068426,39.326278742776,21.0153926541574,12.5149106439641,16.574431957907,15.1979926900986,4.42203911398782,12.5369101535922,46.4437139987852,35.5878595665938,5.02415155899396,6.85794143393979,1.36142988256051,4.30816588446291,20.842079540005,22.9023920649111,16.0668219885222,20.9811103479918,72.3951821491513,14.6880497695862,47.0182082217132,98.7514155602146,66.9315938606404,74.3212426401233,5.27252499660864,3.53032534634767,3.54198515911557,40.5165205154371,33.3931576344575,262.722961267381,34.9380065301992,44.578475979181,70.2532619316897,0.92960640696362,36.5374927492673,3.52320527201817,23.2678071583389,43.7186895484909,21.4840762008693,0,0.32389366601898,0.515151135268373,49.2900029462724,81.9990797804716,133.178649592111,126.208967039787,111.015329765893,210.60033220867,239.935455196673,142.169192123651,217.563651497498,364.051438857869,473.140273066945,585.042422087556,89.2268689431946,53.2166992612799,122.923745991461,180.283412606462,158.53893937559,363.782824579654,118.416616767031,106.912520485195,193.932261492376,69.9404265094887,80.0013166814507,232.312698875349,274.363542460364,233.10286453383,336.642709292931,92.0207244002721,141.418612219225,152.534870746506,11.8302960334687,21.4730342964694,7.75736988380991,2.47122988522289,2.55300717830561,0.32145117339416,7.69534408101371,18.8970843339136,12.6038266097597,0,0.546138611262131,0,0.853460445133014,0.800791974072025,1.14950487990897,1.32208974556972,0,76.8437508297755,142.698637017138,129.208351106327,38.3296852879175,28.0254281490768,0.263384084775077,0.393419540227666,0,3.70082698199117,9.52963023726865,0.651844533267181,0.473447805734733,0,4.2335973616366,10.3112067616193,1.77227115666897,0.270803863765016,7.42929654408916,6.50296737799391,0,0.276350017785848,0,0.593146252648242,0,0,1.0197840842781,0,0,0,0,0,0,0.301150238155546,0,0,0.473554504088034,0,0.403213486449465,0.267440195783507,0.289648807765598,4.87613732627923,23.4745300896273,43.6011335886438,39.3968676099177,56.1498459912196,53.1586724586223,44.5360130348616,71.5353259344875,141.99129538043,90.6873235621887,99.0776382618462,45.7771868864506,114.388720523858,133.482399402395,0.649094787309367,2.08955684759121,0.531831842075461,4.05434061319081,2.85997455390064,1.48583000531826,16.2985174040698,40.4310259699879,44.7811247073797,22.0470097350364,38.1744486951014,41.2677062910101,33.2301996793529,37.2120133203834,51.9418743522597,84.3495944166969,32.2263453687318,45.6163263431108,44.1752324162187,45.5902219628877,94.7866079021659,35.6305915853478,25.5963484793834,16.779110592015,45.994991239765,67.3978618293371,55.1437249230526,2.63560834872127,3.87780264148325,169.204492231303,63.1154378653055,12.663051166458,10.9899620074972,8.89193524321323,10.2853830837524,30.2765904076846,49.1045380356643,45.1401613603403,7.15785381419462,20.3413114825229,21.5769712109766,63.7214770385161,8.06646294271999,0.468642863667593,0.624320153660641,7.41613368007784,4.03511437489863,0.352303495931295,0.161872944368132,0.280901613404497,0.408308342509787,1.96534907698829,1.34323515528495,5.94001428641027,0.741800787835671,18.2032272387605,7.90479955997862,0.168336113954066,0.375355559615893,0,2.19488810440419,2.14541457059314,4.8076178850111,35.8445698785666,37.1336545875944,14.5219024396626,4.87443372666992,7.80236849819446,2.47326070172253,36.5849566864793,13.2142967995429,9.95780360223471,9.84113752128106,12.6216887122057,4.05019554026117,10.6686397500416,18.1054892183473,11.6872433944063,21.8733164080529,71.8930373767464,69.277514630072,43.5942984991286,42.4468497330992,28.6264299574408,70.4135293789281,61.0563614040532,52.987378683882,32.4829849577489,3.12899064659632,2.57296375277154,9.66944449467364,7.42988684851167,0.721879481669586,27.5654844092836,26.6363810323401,26.511213287183,28.7867268831548,29.6316043965672,38.2005696768866,13.0786368915359,15.305274279777,11.1576675514453,87.1023436457085,86.9498997581364,26.3407367252096,17.641045366265,29.1536580090211,149.389736934999,109.886922642741,37.0829003508306,82.8942075780585,92.6466175612038,112.60379282925,76.4331922151813,37.296248764715,81.2000664040305,6.51616610620649,0,76.4956112733948,222.470447147172,67.6274078798333,34.3592145671356,56.4842325343465,22.259735811448,83.7616661836832,70.3958652917795,0.246217006087397,0,0.148631162288728,28.1201501960331,58.9617269977997,57.1353641886817,148.488030641322,153.454719535372,44.8557734623297,35.9644163664039,61.545855375245,18.4522022831287,17.8708742237032,19.1888498808098,19.4303556534037,31.705039321337,24.6156639141099,42.7681115056763,65.0898028812038,57.6658671060322,37.1574362419752,33.3029320505721,23.5418437169971,22.8082068903155,110.915132120173,10.7296933755565,48.182256895692,5.85063856486715,3.12022310734098,4.62973273671856,1.41849132023278,3.46348832720929,38.6040582876998,3.7983512377401,0.823240336780769,25.7331585592051,16.3480296421571,4.75171123760058,11.1532569512047,10.4584015032035,47.9870357673874,7.29742683847143,2.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| |||
|short_description=p1@HES1 | |||
}} |
Revision as of 23:23, 21 January 2014
Short description: | p1@HES1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HES1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000232424, ENST00000476918, NM_005524, uc003ftq.1, uc011bst.1_5end |
EntrezGene: | HES1 |
HGNC: | 5192 |
UniProt: | Q14469 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.25e-23 | 253 |
endodermal cell | 4.66e-15 | 58 |
endo-epithelial cell | 3.01e-11 | 42 |
classical monocyte | 1.17e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.17e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
embryo | 1.41e-11 | 592 |
developing anatomical structure | 5.52e-10 | 581 |
trunk region element | 1.73e-09 | 101 |
subdivision of digestive tract | 2.95e-08 | 118 |
embryonic structure | 4.19e-08 | 564 |
primordium | 7.35e-08 | 160 |
germ layer | 1.05e-07 | 560 |
germ layer / neural crest | 1.05e-07 | 560 |
embryonic tissue | 1.05e-07 | 560 |
presumptive structure | 1.05e-07 | 560 |
germ layer / neural crest derived structure | 1.05e-07 | 560 |
epiblast (generic) | 1.05e-07 | 560 |
endoderm-derived structure | 1.10e-07 | 160 |
endoderm | 1.10e-07 | 160 |
presumptive endoderm | 1.10e-07 | 160 |
endo-epithelium | 1.11e-07 | 82 |
abdomen element | 1.95e-07 | 54 |
abdominal segment element | 1.95e-07 | 54 |
digestive system | 2.19e-07 | 145 |
digestive tract | 2.19e-07 | 145 |
primitive gut | 2.19e-07 | 145 |
subdivision of trunk | 4.59e-07 | 112 |
foregut | 5.64e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.85e-14 | 106 |
cell type cancer | 1.77e-13 | 143 |
squamous cell carcinoma | 4.56e-08 | 14 |