FFCP PHASE1:Hg19::chr5:102201574..102201598,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5066 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8596 | |||
|TSSclassifier=strong | |||
|UniProt=A6NMH0,P19021 | |||
|association_with_transcript=47bp_to_ENST00000348126,ENST00000379787,NM_000919,NM_001177306,NM_138766,NM_138821,NM_138822,NR_033440,uc003kns.2,uc003knt.2,uc003knu.2,uc003knv.2,uc003knw.2,uc011cuz.1_5end | |||
|coexpression_cluster_id=C188 | |||
|description=CAGE_peak_4_at_PAM_5end | |||
|id=chr5:102201574..102201598,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.00e-31!180;CL:0000057!2.82e-20!75;CL:0002620!1.96e-13!23;CL:0000680!1.53e-09!57;CL:0000056!1.53e-09!57;CL:0000355!1.53e-09!57;CL:0000393!2.45e-09!60;CL:0000211!2.45e-09!60;CL:0000187!4.02e-09!54;CL:0000359!4.80e-08!32;CL:0000183!4.94e-08!59;CL:0000192!3.36e-07!42;CL:0000514!3.36e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0002620;3.55e-15;23!CL:0000057;1.39e-08;73!CL:0000359;1.96e-08;32!CL:0002334;2.29e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.65e-23,76;CL:0002620,4.52e-15,23;CL:0000680,5.58e-09,58;CL:0000056,5.58e-09,58;CL:0000355,5.58e-09,58;CL:0000187,1.17e-08,55;CL:0000393,1.23e-08,61;CL:0000211,1.23e-08,61;CL:0000359,1.77e-08,32;CL:0002334,2.07e-07,12;CL:0000192,7.60e-07,43;CL:0000514,7.60e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.36e-13!83;UBERON:0002329!2.36e-13!83;UBERON:0003077!2.36e-13!83;UBERON:0003059!2.36e-13!83;UBERON:0007282!2.36e-13!83;UBERON:0009618!2.36e-13!83;UBERON:0007285!2.36e-13!83;UBERON:0004290!2.62e-13!70;UBERON:0004872!3.13e-11!84;UBERON:0001134!9.40e-11!61;UBERON:0002036!9.40e-11!61;UBERON:0003082!9.40e-11!61;UBERON:0000468!1.10e-10!659;UBERON:0000486!1.39e-10!82;UBERON:0002385!1.40e-10!63;UBERON:0001015!1.40e-10!63;UBERON:0000383!1.40e-10!63;UBERON:0007100!1.89e-10!27;UBERON:0000475!3.49e-10!365;UBERON:0002097!3.17e-09!40;UBERON:0002199!3.29e-09!45;UBERON:0002416!3.29e-09!45;UBERON:0001009!6.59e-09!113;UBERON:0001981!1.07e-08!60;UBERON:0007500!1.07e-08!60;UBERON:0004537!1.07e-08!60;UBERON:0006965!1.07e-08!60;UBERON:0000948!1.15e-08!24;UBERON:0005498!1.15e-08!24;UBERON:0004140!1.15e-08!24;UBERON:0009881!1.15e-08!24;UBERON:0004141!1.15e-08!24;UBERON:0003084!1.15e-08!24;UBERON:0007005!1.15e-08!24;UBERON:0004139!1.15e-08!24;UBERON:0004291!1.15e-08!24;UBERON:0000467!2.57e-08!625;UBERON:0002049!3.42e-08!79;UBERON:0007798!3.42e-08!79;UBERON:0000480!4.19e-08!626;UBERON:0001637!4.52e-08!42;UBERON:0003509!4.52e-08!42;UBERON:0004572!4.52e-08!42;UBERON:0000119!4.98e-08!312;UBERON:0004573!5.37e-08!33;UBERON:0004571!5.37e-08!33;UBERON:0004535!8.21e-08!110;UBERON:0000483!1.43e-07!309;UBERON:0000055!2.25e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;3.91e-11;25!UBERON:0000948;4.33e-09;22!UBERON:0002097;1.61e-08;41!UBERON:0004573;4.65e-08;33!UBERON:0004571;4.65e-08;33!UBERON:0002199;7.10e-08;46!UBERON:0002416;7.10e-08;46!UBERON:0003102;8.14e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002329,3.04e-13,71;UBERON:0003059,3.04e-13,71;UBERON:0007282,3.04e-13,71;UBERON:0004290,3.04e-13,71;UBERON:0009618,3.04e-13,71;UBERON:0007524,5.03e-13,73;UBERON:0003077,9.39e-13,72;UBERON:0007285,9.39e-13,72;UBERON:0007503,1.02e-11,78;UBERON:0002199,1.86e-11,46;UBERON:0002416,1.86e-11,46;UBERON:0007100,1.93e-11,27;UBERON:0002097,2.57e-11,41;UBERON:0000486,6.07e-11,83;UBERON:0004872,1.58e-10,83;UBERON:0001134,2.79e-10,62;UBERON:0002036,2.79e-10,62;UBERON:0003082,2.79e-10,62;UBERON:0002385,5.53e-10,64;UBERON:0001015,5.53e-10,64;UBERON:0000383,5.53e-10,64;UBERON:0010314,9.11e-10,132;UBERON:0000948,2.01e-09,24;UBERON:0005498,2.01e-09,24;UBERON:0004140,2.01e-09,24;UBERON:0009881,2.01e-09,24;UBERON:0004141,2.01e-09,24;UBERON:0003084,2.01e-09,24;UBERON:0007005,2.01e-09,24;UBERON:0004139,2.01e-09,24;UBERON:0004291,2.01e-09,24;UBERON:0004573,1.42e-08,33;UBERON:0004571,1.42e-08,33;UBERON:0001637,2.55e-08,42;UBERON:0003509,2.55e-08,42;UBERON:0004572,2.55e-08,42;UBERON:0001009,6.99e-08,112;UBERON:0007500,1.24e-07,59;UBERON:0001981,1.24e-07,59;UBERON:0004537,1.24e-07,59;UBERON:0006965,1.24e-07,59;UBERON:0004535,8.92e-07,109 | |||
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| |||
|short_description=p4@PAM | |||
}} |
Revision as of 06:44, 22 January 2014
Short description: | p4@PAM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PAM_5end |
Coexpression cluster: | C188_left_heart_tongue_skeletal_Skeletal_diaphragm_throat |
Association with transcript: | 47bp_to_ENST00000348126, ENST00000379787, NM_000919, NM_001177306, NM_138766, NM_138821, NM_138822, NR_033440, uc003kns.2, uc003knt.2, uc003knu.2, uc003knv.2, uc003knw.2, uc011cuz.1_5end |
EntrezGene: | PAM |
HGNC: | 8596 |
UniProt: | A6NMH0P19021 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.65e-23 | 76 |
skin fibroblast | 4.52e-15 | 23 |
muscle precursor cell | 5.58e-09 | 58 |
myoblast | 5.58e-09 | 58 |
multi-potent skeletal muscle stem cell | 5.58e-09 | 58 |
muscle cell | 1.17e-08 | 55 |
electrically responsive cell | 1.23e-08 | 61 |
electrically active cell | 1.23e-08 | 61 |
vascular associated smooth muscle cell | 1.77e-08 | 32 |
preadipocyte | 2.07e-07 | 12 |
smooth muscle cell | 7.60e-07 | 43 |
smooth muscle myoblast | 7.60e-07 | 43 |