FFCP PHASE1:Hg19::chr6:56258897..56258905,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81578 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17025 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-5bp_to_ENST00000370819,uc003pcu.1_5end | |||
|coexpression_cluster_id=C83 | |||
|description=CAGE_peak_9_at_COL21A1_5end | |||
|id=chr6:56258897..56258905,- | |||
|ontology_enrichment_celltype=CL:0001014!2.59e-34!2;CL:0001016!2.59e-34!2;CL:0000453!2.25e-14!5;CL:0000840!3.85e-12!5;CL:0001029!3.85e-12!5;CL:0000039!1.27e-10!7;CL:0000586!1.27e-10!7;CL:1000415!1.33e-09!2;CL:0000990!2.13e-08!8;CL:0000451!5.00e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0001014;3.58e-57;2!CL:0001016;3.58e-57;2!CL:0000453;1.28e-23;5!CL:0000840;7.13e-20;5!CL:0000039;2.78e-17;7!CL:0000586;2.78e-17;7!CL:1000415;2.21e-15;2!CL:0000990;1.31e-13;8!CL:0000451;2.55e-11;10!CL:0000083;2.35e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0001014,4.77e-57,2;CL:0001016,4.77e-57,2;CL:0000453,1.44e-23,5;CL:0000840,7.84e-20,5;CL:0001029,7.84e-20,5;CL:0000039,2.67e-17,7;CL:0000586,2.67e-17,7;CL:1000415,2.74e-15,2;CL:0000990,1.40e-13,8;CL:0000451,2.68e-11,10;CL:0000083,2.26e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0003124;2.73e-29;1 | |||
|ontology_enrichment_disease=DOID:1799!5.26e-18!1;DOID:10165!5.26e-18!1;DOID:1798!5.26e-18!1;DOID:3095!1.98e-07!22;DOID:2994!1.98e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:1799;2.73e-29;1!DOID:10165;2.73e-29;1!DOID:1798;2.73e-29;1!DOID:1793;2.35e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,2.37e-29,1;DOID:10165,2.37e-29,1;DOID:1798,2.37e-29,1;DOID:1793,2.26e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0002110!8.15e-07!3;UBERON:0006242!8.15e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002110;1.04e-10;3!UBERON:0001987;2.35e-08;4!UBERON:0002075;3.14e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002110,1.20e-10,3;UBERON:0006242,1.20e-10,3;UBERON:0001987,2.11e-08,4;UBERON:0004340,2.11e-08,4;UBERON:0002075,3.24e-07,18 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.9273691048295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53620294826866,4.75715515371792,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17330829640882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.72445172258151,1.5476039091159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57144016688853,0,0,0,0,0,0,0,0,0,0.175871244359621,0,0,0,0,0,1.68534503309014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p9@COL21A1 | |||
}} |
Revision as of 12:23, 22 January 2014
Short description: | p9@COL21A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_COL21A1_5end |
Coexpression cluster: | C83_choriocarcinoma_pancreatic_placenta_chorionic_HES3GFP_testicular_amniotic |
Association with transcript: | -5bp_to_ENST00000370819, uc003pcu.1_5end |
EntrezGene: | COL21A1 |
HGNC: | 17025 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD1a-positive Langerhans cell | 4.77e-57 | 2 |
immature CD1a-positive Langerhans cell | 4.77e-57 | 2 |
Langerhans cell | 1.44e-23 | 5 |
immature conventional dendritic cell | 7.84e-20 | 5 |
common dendritic progenitor | 7.84e-20 | 5 |
germ line cell | 2.67e-17 | 7 |
germ cell | 2.67e-17 | 7 |
epithelial cell of gall bladder | 2.74e-15 | 2 |
conventional dendritic cell | 1.40e-13 | 8 |
dendritic cell | 2.68e-11 | 10 |
epithelial cell of pancreas | 2.26e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
gallbladder | 1.20e-10 | 3 |
gall bladder primordium | 1.20e-10 | 3 |
placenta | 2.11e-08 | 4 |
allantois | 2.11e-08 | 4 |
viscus | 3.24e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 2.37e-29 | 1 |
endocrine pancreas cancer | 2.37e-29 | 1 |
pancreatic endocrine carcinoma | 2.37e-29 | 1 |
pancreatic cancer | 2.26e-08 | 4 |