FFCP PHASE1:Hg19::chr6:160101697..160101724,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=not supported | |||
|DPIdataset=robust | |||
|EntrezGene=6648 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11180 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=-294bp_to_uc003qsf.3_5end | |||
|coexpression_cluster_id=C107 | |||
|description=CAGE_peak_10_at_SOD2_5end | |||
|id=chr6:160101697..160101724,- | |||
|ontology_enrichment_celltype=CL:0002057!2.93e-17!42;CL:0000766!7.74e-17!76;CL:0000860!3.29e-16!45;CL:0002194!4.09e-16!63;CL:0000576!4.09e-16!63;CL:0000040!4.09e-16!63;CL:0000559!4.09e-16!63;CL:0002009!9.25e-15!65;CL:0000839!1.16e-12!70;CL:0000557!4.08e-12!71 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.80e-30;33!CL:0002057;2.80e-30;33!CL:0000473;6.47e-28;39!CL:0000234;6.47e-28;39!CL:0000576;1.03e-16;48!CL:0000766;1.21e-13;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.88e-33,48;CL:0000234,1.88e-33,48;CL:0000860,9.91e-30,42;CL:0002057,9.91e-30,42;CL:0002194,1.56e-26,59;CL:0000576,1.56e-26,59;CL:0000040,1.56e-26,59;CL:0000559,1.56e-26,59;CL:0000766,2.41e-26,72;CL:0002009,3.39e-25,61;CL:0000839,3.21e-22,66;CL:0000557,1.11e-21,67;CL:0000763,1.43e-12,108;CL:0000049,1.43e-12,108;CL:0002087,1.78e-11,115;CL:0000738,5.00e-11,136;CL:0002031,3.64e-09,120;CL:0000048,4.63e-08,427;CL:0000134,6.35e-08,354;CL:0000723,1.40e-07,433;CL:0002320,2.50e-07,361;CL:0000034,5.72e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;2.29e-22;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.18e-10!80;UBERON:0002193!4.93e-10!112;UBERON:0002390!9.79e-10!102;UBERON:0003061!9.79e-10!102;UBERON:0002405!7.66e-09!115;UBERON:0001474!9.56e-09!86;UBERON:0002204!1.55e-08!167;UBERON:0004765!2.44e-08!101;UBERON:0001434!2.44e-08!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.22e-19,76;UBERON:0002193,4.89e-19,108;UBERON:0002390,2.45e-18,98;UBERON:0003061,2.45e-18,98;UBERON:0002405,2.01e-17,93;UBERON:0001474,3.56e-17,82;UBERON:0001434,1.88e-14,100;UBERON:0004765,1.95e-14,90;UBERON:0002204,1.14e-12,167;UBERON:0003081,5.15e-11,203;UBERON:0000926,5.76e-10,315;UBERON:0004120,5.76e-10,315;UBERON:0006603,5.76e-10,315;UBERON:0002384,3.85e-07,371 | |||
|phase1_expression=0.181678379270557,5.56661362116556,1.26858963686374,1.0007329835313,0,0,0,0.631719873426831,2.35067065379855,0,0,0,0,0.74259811776028,0.994192127183747,2.01697543935533,0.602694528023977,1.46062018077475,3.90346239032406,0,0.204000691244253,0,0.572471974262113,0.410623275218653,0.627713197974014,0,0,0,0.393364276848904,0.767658796194425,0.928896739896456,0,0.30120591877825,0,0.154934401160603,0.142169232487422,0,4.43196326825502,11.2304890583279,14.3227174672462,1.34349284543955,0.32389366601898,0.257575567634187,2.90796477559129,3.40088349319928,1.94067248950253,16.7348906572093,18.0913870729603,11.1494293522237,28.769239232215,12.5518746199259,9.45928919554341,33.440331031452,25.819387343353,17.6054432572644,13.5534484470675,3.82068610080984,5.8428105955722,31.2205570218321,14.4418062184242,38.3602275479425,3.62836430205388,12.1672831149195,10.6556187633174,48.1747336123449,26.6671055604836,49.825779919646,14.5724225848911,22.4237654920687,4.12658804939722,49.6427592159362,12.1531619875896,24.684066220389,0,0,0,0.112328631146495,0.300353785683013,0.64290234678832,0.570025487482497,0.19891667719909,0.182664153764634,0,0,0,0.426730222566507,0,0,0,0,0,1.17447437874188,0,0,0,0,0.393419540227666,0.393010762749165,1.02800749499755,0,0,0.473447805734733,0,0,0,0,0,0.128091319725675,0.260118695119756,0.164437904603676,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0.150575119077773,0,1.24930726552346,0,0,0,0.802320587350522,1.15859523106239,0,0,0.12786256184353,0.361439152384566,0,5.5041677205113,0,7.78615792484217,0,0.221729397462564,0.351339142772504,0.0654895377488563,0,0,0,0.348259474598534,0.531831842075461,0.476981248610684,0,0,0,0,0,0,0,0.825354125820202,0,0,0,0.33472061276467,0.805658634218294,0.760272105718513,0.732186172644509,0,0,0.17859945656816,0.22452937262617,0,0,0,0,2.63560834872127,3.87780264148325,0,0.993943903390637,0.379891534993739,1.45650098894541,0,1.41867352879343,0,1.06748995729705,1.72667283892012,0,3.63718814588158,0.326923806226917,0,0,0,0.624320153660641,0,2.39117888882882,0.23486899728753,0.161872944368132,0,0.408308342509787,0.737005903870608,0.516628905878827,1.18800285728205,7.17074094907815,0,0.718618141816238,0,0.125118519871964,0,0,0,6.46023653298366,0.113432183160021,0,0.213557388818567,0.423863802319124,0,0,0,0,0,0,0,0.184099797284599,0,0,0,0,0.193260853163297,0.818238361772504,0.573609190778008,0,0,0.116193942869518,0,0.756962552626885,0,1.56449532329816,1.28648187638577,0,3.71494342425583,0.721879481669586,0.118306800039844,0,0,0.441175890929576,0,0.237270619111097,0.134831308160164,0.196221465125346,0,0,0,0,0,3.80265104465493,0,0.590789906681404,0.441463099414651,0.245976877086227,0,0.219500570817251,0,0,0.185176890317059,0,0,0,0.231860809950154,0,2.16549671641611,13.8895653772983,6.84914948044554,0,0,1.23108503043699,0.702012795417713,3.12125440806329,0,0.335964256397719,0.141775097242386,0.447792613514241,0.290633938513962,0,0,0.088048434013226,0,0.432359860250884,0,0.317489471460845,0,0,0,0.102827492703324,0.300343057843917,0.571652865261156,0,0,0,1.55126058909333,0,0,0.26593811658487,1.04007436911366,0,1.41849132023278,0,0,0,0,0,0.355391948742546,0,4.82303003295338,0,8.79762322402102,2.43247561282381,8.53837055434615,6.32501818449095,0,0,0,1.59259437334337,2.4657158706046,0.537182889719687,0.224170287987055,0,0.646882724578552,0.128343036279748,0,0,0,0.167516265334349,0.637938751653163,28.4622669099929,38.8909896965232,6.21623270154053,0.858840442033979,0,0.271265023699736,0.623912584592421,0.178428988797162,0.473107245101804,0.35142424497814,0.300946099727719,4.5481500811197,1.03473071292505,0,0,1.39013783148933,0,0.343143423810856,0,2.37285620900479,1.921096040462,0,0,0.604780586659361,0,0,0.561320188866147,0.256278298511402,0,1.44768529029247,2.96836132889982,0.462629081407967,0.355123450626254,0.164254312027618,0.519254429183621,0.232420756919918,0.120859449591622,1.00253235151642,0.552485933615378,0.574072240823034,1.27463817604702,5.24497659837697,0,0.15403067420883,0,0,0.316654886678627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0.27470839445503,0,0.574265537996172,0.650060246036521,1.6068392984416,0.773365746336976,0.154048617114644,0.460511024178389,0.413509717453592,0.537101224341368,1.45016693914229,1.36362603865761,0,0.165284915360978,0.192190067365106,0.127612712494584,0.50578890427775,0.464845549297286,0,0.6970372701606,0.308033580176089,0,0,0.18532421910392,0.715624433709956,0.372158369359667,0,1.14378116354295,0,0,0,0.78494864019923,0.359744915166629,0,0.589062011728432,0.202182481573316,0,1.68503382495592,0,14.8665228675083,0,0,3.39373036688911,0,0,1.99031692572366,2.19225442626881,0.578775534266688,0.655894752046633,0,0.30982349809975,0,0.430234056612155,0.294747123039363,0,0,19.6330100826828,4.61012850143863,0,0.349934720244983,0.384888450902048,0,0,1.31801321087491,0,1.68471475667626,0,0,1.01489521846434,0.764637207142375,3.98753031021914,1.42939065274673,2.46817363851717,0,0.540031437238115,5.55187623405989,0.213648142254946,0,0.49008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| |||
|short_description=p10@SOD2 | |||
}} |
Revision as of 14:56, 22 January 2014
Short description: | p10@SOD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | No |
Description: | CAGE_peak_10_at_SOD2_5end |
Coexpression cluster: | C107_Neutrophils_CD14_Eosinophils_Monocytederived_Whole_Peripheral_blood |
Association with transcript: | -294bp_to_uc003qsf.3_5end |
EntrezGene: | SOD2 |
HGNC: | 11180 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.88e-33 | 48 |
phagocyte | 1.88e-33 | 48 |
classical monocyte | 9.91e-30 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.91e-30 | 42 |
monopoietic cell | 1.56e-26 | 59 |
monocyte | 1.56e-26 | 59 |
monoblast | 1.56e-26 | 59 |
promonocyte | 1.56e-26 | 59 |
myeloid leukocyte | 2.41e-26 | 72 |
macrophage dendritic cell progenitor | 3.39e-25 | 61 |
myeloid lineage restricted progenitor cell | 3.21e-22 | 66 |
granulocyte monocyte progenitor cell | 1.11e-21 | 67 |
myeloid cell | 1.43e-12 | 108 |
common myeloid progenitor | 1.43e-12 | 108 |
nongranular leukocyte | 1.78e-11 | 115 |
leukocyte | 5.00e-11 | 136 |
hematopoietic lineage restricted progenitor cell | 3.64e-09 | 120 |
multi fate stem cell | 4.63e-08 | 427 |
mesenchymal cell | 6.35e-08 | 354 |
somatic stem cell | 1.40e-07 | 433 |
connective tissue cell | 2.50e-07 | 361 |
stem cell | 5.72e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.22e-19 | 76 |
hemolymphoid system | 4.89e-19 | 108 |
hematopoietic system | 2.45e-18 | 98 |
blood island | 2.45e-18 | 98 |
immune system | 2.01e-17 | 93 |
bone element | 3.56e-17 | 82 |
skeletal system | 1.88e-14 | 100 |
skeletal element | 1.95e-14 | 90 |
musculoskeletal system | 1.14e-12 | 167 |
lateral plate mesoderm | 5.15e-11 | 203 |
mesoderm | 5.76e-10 | 315 |
mesoderm-derived structure | 5.76e-10 | 315 |
presumptive mesoderm | 5.76e-10 | 315 |
connective tissue | 3.85e-07 | 371 |