FFCP PHASE1:Hg19::chr7:142494038..142494075,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=12168 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000390412,uc003wbe.3,uc003wbf.3_5end | |||
|description=CAGE_peak_1_at_TRBJ2-1_5end | |||
|id=chr7:142494038..142494075,+ | |||
|ontology_enrichment_celltype=CL:0000542!5.73e-16!53;CL:0000051!5.73e-16!53;CL:0000838!1.46e-15!52;CL:0000084!3.00e-14!25;CL:0000827!3.00e-14!25;CL:0000791!2.44e-13!18;CL:0000789!2.44e-13!18;CL:0002420!2.44e-13!18;CL:0002419!2.44e-13!18;CL:0000790!2.44e-13!18;CL:0000071!2.58e-09!18;CL:0002546!2.58e-09!18;CL:1000449!6.94e-09!16;CL:0000625!1.06e-08!11;CL:0000115!2.42e-08!35;CL:1000413!1.37e-07!9;CL:0002078!1.84e-07!44;CL:0002681!2.97e-07!13;CL:0002584!2.97e-07!13;CL:1000497!3.00e-07!18;CL:0002518!3.00e-07!18;CL:1000507!7.53e-07!12;CL:1000494!7.53e-07!12;CL:0002087!8.69e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.30e-18;25!CL:0000791;6.97e-18;18!CL:0000789;6.97e-18;18!CL:0002419;6.97e-18;18!CL:0000071;3.81e-13;18!CL:1000449;8.81e-12;15!CL:0000542;1.51e-11;53!CL:0000625;1.89e-11;11!CL:0000115;2.94e-10;36!CL:1000413;5.92e-10;9!CL:1000497;7.00e-10;17!CL:0002518;7.00e-10;17!CL:0002681;1.55e-09;12!CL:0002584;1.55e-09;12!CL:0002543;1.30e-08;6!CL:0002139;1.43e-08;24!CL:1000507;3.47e-08;10!CL:1000494;3.47e-08;10!CL:0000624;1.84e-07;6!CL:0002544;4.33e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,5.43e-20,53;CL:0000051,5.43e-20,53;CL:0000838,1.95e-19,52;CL:0000084,1.19e-18,25;CL:0000827,1.19e-18,25;CL:0000791,6.38e-18,18;CL:0000789,6.38e-18,18;CL:0002420,6.38e-18,18;CL:0002419,6.38e-18,18;CL:0000790,6.38e-18,18;CL:0000071,3.95e-13,18;CL:0002546,3.95e-13,18;CL:1000449,1.18e-11,15;CL:0000625,1.76e-11,11;CL:0000115,2.68e-11,36;CL:0002078,2.73e-10,45;CL:1000413,6.15e-10,9;CL:1000497,8.95e-10,17;CL:0002518,8.95e-10,17;CL:0002681,2.18e-09,12;CL:0002584,2.18e-09,12;CL:0002543,1.32e-08,6;CL:0002139,1.47e-08,24;CL:1000507,3.66e-08,10;CL:1000494,3.66e-08,10;CL:0000624,1.87e-07,6;CL:0002544,4.37e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000790;6.97e-18;18!CL:0002546;3.81e-13;18!CL:0000051;1.51e-11;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!2.58e-09!18;UBERON:0004638!2.58e-09!18;UBERON:0004852!2.58e-09!18;UBERON:0006555!6.35e-09!17;UBERON:0005103!6.35e-09!17;UBERON:0000083!6.35e-09!17;UBERON:0009201!6.35e-09!17;UBERON:0004819!6.35e-09!17;UBERON:0006553!6.35e-09!17;UBERON:0003074!6.35e-09!17;UBERON:0003060!6.35e-09!17;UBERON:0004211!6.94e-09!16;UBERON:0001285!6.94e-09!16;UBERON:0007684!6.94e-09!16;UBERON:0003220!6.94e-09!16;UBERON:0004208!6.94e-09!16;UBERON:0001638!1.69e-08!9;UBERON:0003920!1.69e-08!9;UBERON:0004582!1.69e-08!9;UBERON:0000080!4.39e-08!18;UBERON:0002120!4.39e-08!18;UBERON:0004875!4.39e-08!18;UBERON:0005721!4.39e-08!18;UBERON:0005754!4.39e-08!18;UBERON:0007297!4.39e-08!18;UBERON:0003887!5.18e-08!21;UBERON:0000487!9.23e-08!22;UBERON:0003915!1.37e-07!9;UBERON:0004700!1.37e-07!9;UBERON:0001917!1.37e-07!9;UBERON:0004876!1.71e-07!20;UBERON:0001225!2.97e-07!13;UBERON:0008987!2.97e-07!13;UBERON:0009773!7.53e-07!12;UBERON:0001231!7.53e-07!12;UBERON:0004810!7.53e-07!12;UBERON:0003081!8.83e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;3.81e-13;18!UBERON:0001986;3.81e-13;18!UBERON:0004852;3.81e-13;18!UBERON:0006555;8.81e-12;15!UBERON:0004819;8.81e-12;15!UBERON:0001285;8.81e-12;15!UBERON:0007684;8.81e-12;15!UBERON:0000487;1.64e-11;22!UBERON:0001638;3.57e-11;9!UBERON:0003920;3.57e-11;9!UBERON:0004582;3.57e-11;9!UBERON:0003915;5.92e-10;9!UBERON:0004700;5.92e-10;9!UBERON:0001917;5.92e-10;9!UBERON:0001225;1.55e-09;12!UBERON:0008987;1.55e-09;12!UBERON:0006914;1.81e-09;25!UBERON:0000353;3.11e-08;15!UBERON:0004211;3.47e-08;10!UBERON:0009773;3.47e-08;10!UBERON:0001231;3.47e-08;10!UBERON:0004810;3.47e-08;10!UBERON:0006554;4.01e-08;30!UBERON:0001008;4.01e-08;30!UBERON:0003914;2.73e-07;74!UBERON:0000490;4.14e-07;33!UBERON:0001851;5.24e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,3.95e-13,18;UBERON:0001986,3.95e-13,18;UBERON:0004852,3.95e-13,18;UBERON:0004211,1.18e-11,15;UBERON:0009773,1.18e-11,15;UBERON:0001231,1.18e-11,15;UBERON:0001285,1.18e-11,15;UBERON:0007684,1.18e-11,15;UBERON:0004208,1.18e-11,15;UBERON:0000487,1.69e-11,22;UBERON:0001638,3.38e-11,9;UBERON:0003920,3.38e-11,9;UBERON:0004582,3.38e-11,9;UBERON:0006555,1.18e-10,16;UBERON:0004819,1.18e-10,16;UBERON:0003915,6.15e-10,9;UBERON:0004700,6.15e-10,9;UBERON:0001917,6.15e-10,9;UBERON:0006914,1.86e-09,25;UBERON:0001225,2.18e-09,12;UBERON:0008987,2.18e-09,12;UBERON:0006554,3.60e-08,47;UBERON:0004810,3.66e-08,10;UBERON:0000353,3.92e-08,15;UBERON:0001008,7.54e-08,48;UBERON:0004535,9.41e-08,109;UBERON:0001009,3.11e-07,112;UBERON:0002049,6.62e-07,78;UBERON:0007798,6.62e-07,78;UBERON:0001851,6.78e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,41.7747692052565,33.4944560626765,61.1635841964482,72.7996859910532,0,0,0,0,0,0,1.96993692922861,14.8920504608305,0,0,0,0,0.458480434487708,0.738905305049512,1.57421562627358,2.36018566109342,8.82807615623589,2.47705797305722,0,0,0,0,2.98555388223585,5.5784083473621,1.66198622559563,1.00272223735071,1.30206522429511,0.223915474239924,0.647787332037959,0,0.290796477559129,0.377875943688809,0,0,0,0.309706370895104,0,0.768482119587302,0,0.344745680736619,1.93645405075148,0,0,0.545812300115692,0.224723484445085,0,0.320929027076094,0,0,0.199463657621632,0,0,0.56738522469114,0,0.251248665256743,0,0.217188844705117,0.605399502633369,1.47311054395026,0,0,0,0,0,0,0,0,0,0,1.75996244461323,2.73069305631066,4.44754626931777,2.13365111283254,2.40237592221607,3.4485146397269,3.96626923670917,2.86216126360609,0,3.52342313622563,0.764546456250458,10.5737062863221,7.28661131875997,3.423993102076,7.08155172409799,14.5413982217191,11.719285442972,20.3967524376627,17.2738801315803,13.2565385605725,23.3792074089494,12.7007920849098,24.4522903204115,21.4887877746113,12.1861738694257,10.7596708569567,8.9740949816316,13.8127839867088,22.9370514762254,21.1556252586588,22.094697911147,20.0655621067285,25.0885257131944,16.203236005752,17.2449222120865,16.1504899376836,13.9160830610727,12.7426165729639,11.0684187155591,15.207232711174,18.8218898847216,18.5580586173907,9.99445812418767,7.81364931745256,7.39015197228942,8.0642697289893,5.88368430723716,10.7170058873271,0,0.670700859703636,0,0,0,0,0,0,0.283604451492204,3.76939975686359,18.0061310670908,0.327447688744282,0,0,0.324547393654683,0,0.26591592103773,0.476981248610684,0.571994910780128,0,5.96287222100115,15.4842227119102,35.7554716655822,20.3510859092643,62.505415995276,11.0047216776027,6.47884396264113,0,0,0,0,0,0,11.0298924103761,4.0507097394088,29.0224116923259,26.9435247151404,36.4861196765964,111.921145350095,53.1588769358152,51.8460935323053,0,7.75560528296651,0,0,3.03913227994991,0,1.14734648299525,3.90135220418193,0.560677600142307,1.06748995729705,0.24666754841716,0.311211035399766,0.134710672069688,0,1.05950199351452,0,9.13853584151807,0,2.85235910772225,0,0,0,0,0,0,0.103325781175765,0,0,3.64064544775211,2.15585442544872,0,0,0,0,0,0,2.04177929688038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.847802961552438,0,0,0,3.90315859614705,3.31324420803713,5.6935032006064,5.70135802584537,11.8590799911545,1.82488679537915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.80483547606892,0.8231480226628,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,8.14520763275812,6.23960871167747,11.5465073620219,0,2.81780866165972,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0.621984346622316,0,0.12624243342638,0,0,0,1.71072446022705,0,0,0,1.00917975910825,0,0.66004457238855,0,0,0,0,0,0,2.83698264046557,0,0,1.08524321078289,8.23240336780769,0,0,14.2551337128017,0,0,0,0,0,0,0,0,0,0,0,0,3.6988097517864,13.3980916937311,8.19384784466166,5.77543663258868,0,3.90419561572865,0.773288812777695,3.68535783735567,1.91381625495949,0,0,0,0.12269149171914,0.500170521059677,0.813795071099207,0,0,0,0,0,0,0,1.32845119707087,0.184369168541703,0.347534457872331,0.391602314925481,0,5.58273670531796,6.25571182373989,5.12292277456533,4.85004114314015,24.9653159265746,16.9338564264621,0,0,0,0,0,0,0,0.308419387605311,0,0,0,0,0,0.200506470303285,0,5.0518357192427,1.0925470080403,0,10.3775910968705,3.15762882128101,4.70609861506113,5.84556898613043,8.44413031143006,3.4120015221269,4.08224892663638,3.23873874153209,3.08454505380579,1.89662506280697,1.00337954770971,2.80363900349542,9.14183609821597,6.04461837749881,0,0,0,0.328014645699706,0,0.206082023295445,0,0,0,0,0,0,0.308097234229289,0,0.413509717453592,0,0,0.170453254832202,0,1.4875642382488,2.69066094311149,0,0.2023155617111,0.464845549297286,0,0,0,2.66153015158511,0,0,0.286249773483982,0.372158369359667,1.2655176988749,0,3.07077349573601,0.42793898803392,0,0,0.539617372749944,0.54907405947211,2.35624804691373,1.41527737101321,0,0,6.82687234725426,0,0,1.77449884830381,0.565621727814851,0,0,0,0,0,3.27947376023316,0.202910376962704,2.478587984798,6.47899885824155,22.228759591628,3.7334635584986,0,2.12856638442359,0.211107635297664,0,14.0405074293315,3.49934720244983,0,0.670302275535787,0,0.470719003883896,4.3050537267123,3.36942951335251,4.87773168890343,10.1078296091062,4.56702848308952,8.41100927856613,3.98753031021914,5.71756261098694,6.17043409629291,5.83625980073446,2.16012574895246,0.79312517629427,0,0,0,2.9728508020115,0,0,17.3774637274416,0.798317485731266,15.5119349807217,0,0,0,0,0,0,3.72441911163527,0,0,0,0,0,0,0,0,10.0226222602287,0,0,2.33150377598474,0,0,0,0,16.1592907202344,0,0.71623345421307,0,0,0,0,0,0.329607748453519,0,0.19924798825107,3.86797481743607,0,0.102268682502155,0,0,0,0,0,0.197286811273867,4.7896618469388,0,0,0.185536196323703,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0,0,0.331737779793674,0,0,0,0,0.384751292518985,0,0,0,0,0,0.366390373607449,0,246.285848651725,0,0,0,0.588187602953219,1.34257269580674,0.37950746544837,0,0,0,0,0,0,0.4422878225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| |||
|short_description=p1@TRBJ2-1 | |||
}} |
Revision as of 19:48, 22 January 2014
Short description: | p1@TRBJ2-1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TRBJ2-1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000390412, uc003wbe.3, uc003wbf.3_5end |
EntrezGene: | NA |
HGNC: | 12168 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 5.43e-20 | 53 |
common lymphoid progenitor | 5.43e-20 | 53 |
lymphoid lineage restricted progenitor cell | 1.95e-19 | 52 |
T cell | 1.19e-18 | 25 |
pro-T cell | 1.19e-18 | 25 |
mature alpha-beta T cell | 6.38e-18 | 18 |
alpha-beta T cell | 6.38e-18 | 18 |
immature T cell | 6.38e-18 | 18 |
mature T cell | 6.38e-18 | 18 |
immature alpha-beta T cell | 6.38e-18 | 18 |
blood vessel endothelial cell | 3.95e-13 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.95e-13 | 18 |
epithelial cell of nephron | 1.18e-11 | 15 |
CD8-positive, alpha-beta T cell | 1.76e-11 | 11 |
endothelial cell | 2.68e-11 | 36 |
meso-epithelial cell | 2.73e-10 | 45 |
endothelial cell of artery | 6.15e-10 | 9 |
kidney cell | 8.95e-10 | 17 |
kidney epithelial cell | 8.95e-10 | 17 |
kidney cortical cell | 2.18e-09 | 12 |
renal cortical epithelial cell | 2.18e-09 | 12 |
vein endothelial cell | 1.32e-08 | 6 |
endothelial cell of vascular tree | 1.47e-08 | 24 |
kidney tubule cell | 3.66e-08 | 10 |
nephron tubule epithelial cell | 3.66e-08 | 10 |
CD4-positive, alpha-beta T cell | 1.87e-07 | 6 |
aortic endothelial cell | 4.37e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 3.95e-13 | 18 |
endothelium | 3.95e-13 | 18 |
cardiovascular system endothelium | 3.95e-13 | 18 |
nephron epithelium | 1.18e-11 | 15 |
renal tubule | 1.18e-11 | 15 |
nephron tubule | 1.18e-11 | 15 |
nephron | 1.18e-11 | 15 |
uriniferous tubule | 1.18e-11 | 15 |
nephrogenic mesenchyme | 1.18e-11 | 15 |
simple squamous epithelium | 1.69e-11 | 22 |
vein | 3.38e-11 | 9 |
venous blood vessel | 3.38e-11 | 9 |
venous system | 3.38e-11 | 9 |
excretory tube | 1.18e-10 | 16 |
kidney epithelium | 1.18e-10 | 16 |
endothelial tube | 6.15e-10 | 9 |
arterial system endothelium | 6.15e-10 | 9 |
endothelium of artery | 6.15e-10 | 9 |
squamous epithelium | 1.86e-09 | 25 |
cortex of kidney | 2.18e-09 | 12 |
renal parenchyma | 2.18e-09 | 12 |
urinary system structure | 3.60e-08 | 47 |
nephron tubule epithelium | 3.66e-08 | 10 |
parenchyma | 3.92e-08 | 15 |
renal system | 7.54e-08 | 48 |
cardiovascular system | 9.41e-08 | 109 |
circulatory system | 3.11e-07 | 112 |
vasculature | 6.62e-07 | 78 |
vascular system | 6.62e-07 | 78 |
cortex | 6.78e-07 | 15 |