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Template:JASPAR motif: Difference between revisions

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<html>
{{Loading|loadingimage=sprites.gif}}<html>
<style type="text/css" title="currentStyle">
<style type="text/css" title="currentStyle">
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
@import "/resource_browser/rb_js/datatables/media/css/jquery.dataTables.css";
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       border:0px solid #a1a1a1;
       border:0px solid #a1a1a1;
       padding:5px 10px;  
       padding:5px 10px;  
       border-radius:5px;
       border-radius:10px;
       background:#FEFEFE;
       background:#FEFEFE;
}
}
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table.details th { width:10%; background-color: #5A5FB5; color: white;}
table.details th { width:10%; background-color: #5A5FB5; color: white;}
</style>
</style>
<script type="text/javascript" src="/resource_browser/rb_js/custom/convert.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/media/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
<script type="text/javascript" src="/resource_browser/rb_js/datatables/extras/TableTools/media/js/TableTools.min.js"></script>
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"sScrollY": "300px",
"sScrollY": "300px",
"bScrollCollapse": true,
"bScrollCollapse": true,
"bPaginate": false,
"bPaginate": true,
"bFilter": false,
"bFilter": true,
"bInfo": false,
"bInfo": true,
                "iDisplayLength": 10,
                "aLengthMenu": [[5,10,-1], [5,10,"All"]],
"aaData": h_data,
"aaData": h_data,
"aoColumns": [{ "sTitle": "FF samples",  "bSortable": false, "fnRender": function(obj) {
"aoColumns": [{ "sTitle": "FF samples",  "bSortable": false, "fnRender": function(obj) {
return sReturn = '<a href="/resource_browser/index.php/FF:'+obj.aData[ obj.iDataColumn ].split('.').pop()+'">'+decodeURIComponent(obj.aData[ obj.iDataColumn ])+'</a>';
return sReturn = '<a href="/resource_browser/index.php/FF:'+obj.aData[ obj.iDataColumn ].split('.').pop()+'">'+decodeURIComponent(obj.aData[ obj.iDataColumn ])+'</a>';
} },{ "sTitle": "p-value",  "sType": "numeric", "sWidth": "50pt" }],
} },{ "sTitle": "p-value",  "sType": "numeric", "sWidth": "50pt", "aTargets": [1],"fnRender": function (obj) {                   
                  var num =obj.aData[obj.iDataColumn];
                  return exp_converter(num,2,"e") ;
}}],
"aaSorting": [[ 1, "asc" ]],
"aaSorting": [[ 1, "asc" ]],
});
});
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"sScrollY": "300px",
"sScrollY": "300px",
"bScrollCollapse": true,
"bScrollCollapse": true,
"bPaginate": false,
"bPaginate": true,
"bFilter": false,
"bFilter": true,
"bInfo": false,
"bInfo": true,
                "iDisplayLength": 10,
                "aLengthMenu": [[5,10,-1], [5,10,"All"]],
"aaData": m_data,
"aaData": m_data,
"aoColumns": [{ "sTitle": "FF samples",  "bSortable": false, "fnRender": function(obj) {
"aoColumns": [{ "sTitle": "FF samples",  "bSortable": false, "fnRender": function(obj) {
return sReturn = '<a href="/resource_browser/index.php/FF:'+obj.aData[ obj.iDataColumn ].split('.').pop()+'">'+decodeURIComponent(obj.aData[ obj.iDataColumn ])+'</a>';
return sReturn = '<a href="/resource_browser/index.php/FF:'+obj.aData[ obj.iDataColumn ].split('.').pop()+'">'+decodeURIComponent(obj.aData[ obj.iDataColumn ])+'</a>';
} },{ "sTitle": "p-value",  "sType": "numeric", "sWidth": "50pt" }],
} },{ "sTitle": "p-value",  "sType": "numeric", "sWidth": "50pt", "aTargets": [1],"fnRender": function (obj) {                   
                  var num =obj.aData[obj.iDataColumn];
                  return exp_converter(num,2,"e") ;
}}],
"aaSorting": [[ 1, "asc" ]],
"aaSorting": [[ 1, "asc" ]],
});
});
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   <div class="content">
   <div class="content">
     <table class="details">
     <table class="details">
       <tr><th scope="row" align="right">Name:</th><td></html>{{PAGENAME}}<html></td></tr>
       <tr><th scope="row" align="right">JASPAR ID:</th><td></html>{{PAGENAME}}<html></td></tr>
       <tr><th scope="row" align="right">Related Gene:</th><td></html>{{#arraymap:{{{name}}}|::|$|{{#set:name=$}}{{#ask:[[Category:EntrezGene]][[symbol::~$]]|?symbol|?description|?GeneID|?Tax id|link=none|format=template|template=JASPAR_motif_relatedgene}}|<br>}}<html></td></tr>
       <tr><th scope="row" align="right">name:</th><td></html>{{#arraymap:{{{name}}}|::|$|{{#set:name=$}}{{#ask:[[Category:EntrezGene]][[symbol::~$]]|?symbol|?description|?GeneID|?Tax id|link=none|format=template|template=JASPAR_motif_relatedgene}}|<br>}}<html></td></tr>
<tr><th scope="row" align="right">xref:</th><td></html>[http://jaspar.genereg.net/cgi-bin/jaspar_db.pl?ID={{PAGENAME}}&rm=present&collection=CORE Jaspar Database]<html></td></tr>
     </table>
     </table>
     </div>
     </div>
  <div class="content">
          <img src="/resource_browser/seqlogo/jaspar/</html>{{PAGENAME}}<html>.png" width ="200" height = "100">
  </div>
  </div></html>
  </div></html>
== P-values for the human samples ==
{{Fontsize|3| Association to promoter expression in human samples}}{{#info:<b>Summary:</b>Significance of the correlation with CAGE expression, human <br><b>Analyst:</b> Michiel de Hoon
{{#info:<b>Summary:</b>Significance of the correlation with CAGE expression, human <br><b>Analyst:</b> Michiel de Hoon}}
<br><br>
 
link to source dataset <br>
[http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/jaspar_Significance_of_the_correlation_with_CAGE_expression/hg19.pvalues.txt data]
}}
----
<table id="h_pval_table"></table>
<table id="h_pval_table"></table>
<br><br><br>


== P-values for the mouse samples ==
{{Fontsize|3|Association to promoter expression in mouse samples}}
{{#info:<b>Summary:</b>Significance of the correlation with CAGE expression, mouse <br><b>Analyst:</b> Michiel de Hoon}}
{{#info:<b>Summary:</b>Significance of the correlation with CAGE expression, mouse <br><b>Analyst:</b> Michiel de Hoon
 
<br><br>
link to source dataset <br>
[http://fantom.gsc.riken.jp/5/datafiles/phase1.1/extra/Motifs/jaspar_Significance_of_the_correlation_with_CAGE_expression/mm9.pvalues.txt data]
}}
----
<table id="m_pval_table"></table>
<table id="m_pval_table"></table>


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{{#arraymap:{{{jaspar_motifs_human_sample_pval}}}|,|$
{{#arraymap:{{{jaspar_motifs_human_sample_pval}}}|,|$
|{{#set:jaspar_motifs_sample_pval=$}}
|{{#set:jaspar_motifs_sample_pval=$}}
}}
{{#arraymap:{{{jaspar_motifs_human_sample_pval}}}|,|$
|{{#set:motifs_sample_human_pval={{#explode:$|;|0}}}}
}}
{{#arraymap:{{{jaspar_motifs_mouse_sample_pval}}}|,|$
|{{#set:motifs_sample_mouse_pval={{#explode:$|;|0}} }}
}}
}}


Revision as of 10:38, 8 April 2014

JASPAR ID:JASPAR motif
name:
xref:motif&rm=present&collection=CORE Jaspar Database

Association to promoter expression in human samples<b>Summary:</b>Significance of the correlation with CAGE expression, human <br><b>Analyst:</b> Michiel de Hoon<br><br>link to source dataset <br>data




Association to promoter expression in mouse samples <b>Summary:</b>Significance of the correlation with CAGE expression, mouse <br><b>Analyst:</b> Michiel de Hoon<br><br>link to source dataset <br>data

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