Personal tools

CL:0000226: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:0000226
|alt_id=
|name=single nucleate cell
|namespace=cell
|def="A cell with a single nucleus." [FB:ma, GOC:tfm]
|xref=
|is_a=CL:0000003
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A cell with a single nucleus." [FB:ma, GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000226
|is_a=CL:0002242
|is_obsolete=
|located_in=
|located_in=
|name=single nucleate cell
|namespace=cell
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:16, 12 September 2014

Name:single nucleate cell
Namespace:cell
Definition:"A cell with a single nucleus." [FB:ma, GOC:tfm]


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0002242(nucleate cell)



Children


is a:CL:0000842 (mononuclear cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

  • 11231-116C7 (Peripheral Blood Mononuclear Cells, donor1)
  • 11312-117C7 (Peripheral Blood Mononuclear Cells, donor2)
  • 11388-118C2 (Peripheral Blood Mononuclear Cells, donor3)

Mouse (Mus musculus)

  • 11231-116C7 (Peripheral Blood Mononuclear Cells, donor1)
  • 11312-117C7 (Peripheral Blood Mononuclear Cells, donor2)
  • 11388-118C2 (Peripheral Blood Mononuclear Cells, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000226 (single nucleate cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.43e-65FFCP PHASE2:Hg19::chr3:16337109..16337111,+#_0fe8b1ffc4f476c6c2f57571f82ff9b3p@chr3:16337109..16337111, +
1.43e-65FFCP PHASE1:Hg19::chr3:16337109..16337111,+#_0fe8b1ffc4f476c6c2f57571f82ff9b3p@chr3:16337109..16337111, +
1.83e-59FFCP PHASE1:Hg19::chr1:25238094..25238098,+#_38578f74962c80133cf9db2811e94ae7p@chr1:25238094..25238098, +
1.83e-59FFCP PHASE1:Hg19::chr9:132536282..132536289,+#_38578f74962c80133cf9db2811e94ae7p@chr9:132536282..132536289, +
1.83e-59FFCP PHASE2:Hg19::chr9:132536282..132536289,+#_38578f74962c80133cf9db2811e94ae7p@chr9:132536282..132536289, +
1.83e-59FFCP PHASE2:Hg19::chr1:25238094..25238098,+#_38578f74962c80133cf9db2811e94ae7p@chr1:25238094..25238098, +
3.13e-54FFCP PHASE2:Hg19::chr22:30673870..30673880,+#_cf118b77c8d982b501c5030251b71584p@chr22:30673870..30673880, +
3.13e-54FFCP PHASE1:Hg19::chr22:30673870..30673880,+#_cf118b77c8d982b501c5030251b71584p@chr22:30673870..30673880, +
6.5e-54FFCP PHASE1:Hg19::chr8:27265868..27265877,-#_806f7f740f070b1f31d0d2a340b14253p@chr8:27265868..27265877, -
6.5e-54FFCP PHASE2:Hg19::chr8:27265868..27265877,-#_806f7f740f070b1f31d0d2a340b14253p@chr8:27265868..27265877, -
1.97e-49FFCP PHASE1:Hg19::chr17:74593998..74594009,-#_ebb0d5580a2cc808349d550a70e4d219p@chr17:74593998..74594009, -
1.97e-49FFCP PHASE2:Hg19::chr17:74593998..74594009,-#_ebb0d5580a2cc808349d550a70e4d219p@chr17:74593998..74594009, -
2.33e-49FFCP PHASE2:Hg19::chr13:31288341..31288344,-#_a9576a135be2ba36ca3cac5cbe300b64p@chr13:31288341..31288344, -
2.33e-49FFCP PHASE1:Hg19::chr13:31288341..31288344,-#_a9576a135be2ba36ca3cac5cbe300b64p@chr13:31288341..31288344, -
3.06e-46FFCP PHASE1:Hg19::chr20:23136099..23136105,+#_3c24ccfc6e153ba7de5fbb43fe77a12cp@chr20:23136099..23136105, +
3.06e-46FFCP PHASE2:Hg19::chr20:23136099..23136105,+#_3c24ccfc6e153ba7de5fbb43fe77a12cp@chr20:23136099..23136105, +
1.23e-45FFCP PHASE1:Hg19::chr5:53967032..53967048,-#_2172d9979254e67847c04a5116dbee75p@chr5:53967032..53967048, -
1.23e-45FFCP PHASE2:Hg19::chr5:53967032..53967048,-#_2172d9979254e67847c04a5116dbee75p@chr5:53967032..53967048, -
1.67e-45FFCP PHASE2:Hg19::chr17:80085705..80085716,-#_37e2e9f10834a67d71d35d009d5d054dp@chr17:80085705..80085716, -
1.67e-45FFCP PHASE1:Hg19::chr17:80085705..80085716,-#_37e2e9f10834a67d71d35d009d5d054dp@chr17:80085705..80085716, -
2.38e-44FFCP PHASE2:Hg19::chr6:14598755..14598797,-#_997f7d8ce4d5004f6d880d5899a1cfaep@chr6:14598755..14598797, -
2.38e-44FFCP PHASE1:Hg19::chr6:14598755..14598797,-#_997f7d8ce4d5004f6d880d5899a1cfaep@chr6:14598755..14598797, -
1.43e-42FFCP PHASE1:Hg19::chr4:26220615..26220664,-#_8cdc475f8119de133654e2a7637af0bbp@chr4:26220615..26220664, -
1.43e-42FFCP PHASE2:Hg19::chr4:26220615..26220664,-#_8cdc475f8119de133654e2a7637af0bbp@chr4:26220615..26220664, -
2.54e-42FFCP PHASE2:Hg19::chr13:31289054..31289070,+#_ac408f7cbdb495eb67cc083793b56e7dp@chr13:31289054..31289070, +
2.54e-42FFCP PHASE1:Hg19::chr13:31289054..31289070,+#_ac408f7cbdb495eb67cc083793b56e7dp@chr13:31289054..31289070, +
2.54e-42FFCP PHASE2:Hg19::chr2:242051009..242051013,+#_ac408f7cbdb495eb67cc083793b56e7dp@chr2:242051009..242051013, +
2.54e-42FFCP PHASE1:Hg19::chr2:242051009..242051013,+#_ac408f7cbdb495eb67cc083793b56e7dp@chr2:242051009..242051013, +
2.56e-40FFCP PHASE2:Hg19::chr9:132543512..132543535,-#_ad531a6085e2307743d65d2a09416722p@chr9:132543512..132543535, -
2.56e-40FFCP PHASE1:Hg19::chr9:132543512..132543535,-#_ad531a6085e2307743d65d2a09416722p@chr9:132543512..132543535, -
3.35e-40FFCP PHASE2:Hg19::chr21:16251857..16251872,-#_8306fda3f5074697eba2b3ecaf27bab1p@chr21:16251857..16251872, -
3.35e-40FFCP PHASE1:Hg19::chr21:16251857..16251872,-#_8306fda3f5074697eba2b3ecaf27bab1p@chr21:16251857..16251872, -
5.01e-40FFCP PHASE1:Hg19::chr7:106039339..106039343,-#_8a3ef0f6f1963fa377ab31ebc69d5b9ap@chr7:106039339..106039343, -
5.01e-40FFCP PHASE2:Hg19::chr7:106039339..106039343,-#_8a3ef0f6f1963fa377ab31ebc69d5b9ap@chr7:106039339..106039343, -
1.12e-39FFCP PHASE1:Hg19::chr16:81476783..81476798,+#_39219bdbada25ae4ec0f5603f1af6005p@chr16:81476783..81476798, +
1.12e-39FFCP PHASE2:Hg19::chr16:81476783..81476798,+#_39219bdbada25ae4ec0f5603f1af6005p@chr16:81476783..81476798, +
3.48e-38FFCP PHASE1:Hg19::chr16:11655016..11655021,+#_91357e7cee21d6547f9d87fc47cd01cbp@chr16:11655016..11655021, +
3.48e-38FFCP PHASE2:Hg19::chr16:11655016..11655021,+#_91357e7cee21d6547f9d87fc47cd01cbp@chr16:11655016..11655021, +
4.67e-38FFCP PHASE1:Hg19::chr10:29922542..29922549,+#_aaecaccb69f0209b9e7d85ffdce9ccbbp@chr10:29922542..29922549, +
4.67e-38FFCP PHASE1:Hg19::chr5:53972410..53972425,-#_aaecaccb69f0209b9e7d85ffdce9ccbbp@chr5:53972410..53972425, -
4.67e-38FFCP PHASE2:Hg19::chr10:125795831..125795840,+#_aaecaccb69f0209b9e7d85ffdce9ccbbp@chr10:125795831..125795840, +
4.67e-38FFCP PHASE2:Hg19::chr5:53972410..53972425,-#_aaecaccb69f0209b9e7d85ffdce9ccbbp@chr5:53972410..53972425, -
4.67e-38FFCP PHASE1:Hg19::chr10:125795831..125795840,+#_aaecaccb69f0209b9e7d85ffdce9ccbbp@chr10:125795831..125795840, +
4.67e-38FFCP PHASE2:Hg19::chr10:29922542..29922549,+#_aaecaccb69f0209b9e7d85ffdce9ccbbp@chr10:29922542..29922549, +
7.42e-38FFCP PHASE2:Hg19::chr9:110250603..110250614,-#_4250677b0978ef323d73366b66d80ed8p24@KLF4
7.42e-38FFCP PHASE1:Hg19::chr9:110250603..110250614,-#_4250677b0978ef323d73366b66d80ed8p24@KLF4
1.23e-37FFCP PHASE1:Hg19::chr9:93847742..93847748,-#_d1903863237931fc216108a582f1c69ap@chr9:93847742..93847748, -
1.23e-37FFCP PHASE2:Hg19::chr9:93847742..93847748,-#_d1903863237931fc216108a582f1c69ap@chr9:93847742..93847748, -
2.03e-37FFCP PHASE2:Hg19::chr13:114908634..114908638,-#_4b6670a9b757a4ea68cf0937ef2707fep@chr13:114908634..114908638, -
2.03e-37FFCP PHASE1:Hg19::chr13:114908634..114908638,-#_4b6670a9b757a4ea68cf0937ef2707fep@chr13:114908634..114908638, -
3.79e-37FFCP PHASE1:Hg19::chr5:171535614..171535618,-#_f3618515bab1a08e60c25f379079ab15p9@STK10
3.79e-37FFCP PHASE2:Hg19::chr5:171535614..171535618,-#_f3618515bab1a08e60c25f379079ab15p9@STK10
6.23e-37FFCP PHASE2:Hg19::chr22:50740830..50740842,+#_b5a5c2d7c3f0885f9a43f90021b88893p@chr22:50740830..50740842, +
6.23e-37FFCP PHASE1:Hg19::chr22:50740830..50740842,+#_b5a5c2d7c3f0885f9a43f90021b88893p@chr22:50740830..50740842, +
1.4e-35FFCP PHASE1:Hg19::chr11:693022..693033,-#_8d3002717ec0ab4d0ba4fc0c3b69dc39p@chr11:693022..693033, -
1.4e-35FFCP PHASE2:Hg19::chr11:693022..693033,-#_8d3002717ec0ab4d0ba4fc0c3b69dc39p@chr11:693022..693033, -
1.77e-35FFCP PHASE1:Hg19::chr8:29953118..29953123,+#_5213f097ec67ff69900ff895d019b4c3p7@LEPROTL1
1.77e-35FFCP PHASE2:Hg19::chr8:29953118..29953123,+#_5213f097ec67ff69900ff895d019b4c3p7@LEPROTL1
2.85e-35FFCP PHASE2:Hg19::chr17:80084484..80084497,-#_d65723b9ecf46ddae5ac2ac293525b66p@chr17:80084484..80084497, -
2.85e-35FFCP PHASE1:Hg19::chr17:80084484..80084497,-#_d65723b9ecf46ddae5ac2ac293525b66p@chr17:80084484..80084497, -
3.2e-35FFCP PHASE1:Hg19::chr3:101568018..101568039,-#_3d6b3901e5c7a998b9a51622db490eecp@chr3:101568018..101568039, -
3.2e-35FFCP PHASE2:Hg19::chr3:101568018..101568039,-#_3d6b3901e5c7a998b9a51622db490eecp@chr3:101568018..101568039, -
4.05e-35FFCP PHASE1:Hg19::chr17:80085735..80085746,-#_4ba8dd60c54c4d26982c2395eb537935p@chr17:80085735..80085746, -
4.05e-35FFCP PHASE2:Hg19::chr17:80085735..80085746,-#_4ba8dd60c54c4d26982c2395eb537935p@chr17:80085735..80085746, -
4.56e-35FFCP PHASE1:Hg19::chr19:58838845..58838863,-#_506e25a66082fb49bf91ca21589cc10ap@chr19:58838845..58838863, -
4.56e-35FFCP PHASE2:Hg19::chr19:58838845..58838863,-#_506e25a66082fb49bf91ca21589cc10ap@chr19:58838845..58838863, -
5.76e-35FFCP PHASE2:Hg19::chr19:52239330..52239340,-#_160a5c2d8559c87e340de097c22f0718p@chr19:52239330..52239340, -
5.76e-35FFCP PHASE1:Hg19::chr19:52239330..52239340,-#_160a5c2d8559c87e340de097c22f0718p@chr19:52239330..52239340, -
3.33e-34FFCP PHASE2:Hg19::chr12:98831630..98831637,-#_8cce2a1c37b6e2dfa843fda12a028793p@chr12:98831630..98831637, -
3.33e-34FFCP PHASE1:Hg19::chr12:98831630..98831637,-#_8cce2a1c37b6e2dfa843fda12a028793p@chr12:98831630..98831637, -
5.96e-34FFCP PHASE2:Hg19::chr10:73538946..73538954,+#_f07c4554ffbd2c0e0eebd6cd548356ddp@chr10:73538946..73538954, +
5.96e-34FFCP PHASE1:Hg19::chr10:73538946..73538954,+#_f07c4554ffbd2c0e0eebd6cd548356ddp@chr10:73538946..73538954, +
7.7e-34FFCP PHASE2:Hg19::chr10:32040654..32040692,+#_df97864530db182fc1fe63078e7c854ap@chr10:32040654..32040692, +
7.7e-34FFCP PHASE1:Hg19::chr10:32040654..32040692,+#_df97864530db182fc1fe63078e7c854ap@chr10:32040654..32040692, +
7.7e-34FFCP PHASE1:Hg19::chr2:85923157..85923172,-#_df97864530db182fc1fe63078e7c854ap@chr2:85923157..85923172, -
7.7e-34FFCP PHASE2:Hg19::chr2:85923157..85923172,-#_df97864530db182fc1fe63078e7c854ap@chr2:85923157..85923172, -
1.08e-33FFCP PHASE2:Hg19::chr17:80085902..80085908,+#_420985089497d1e71c87d85c2b165125p@chr17:80085902..80085908, +
1.08e-33FFCP PHASE2:Hg19::chr1:12662045..12662059,-#_420985089497d1e71c87d85c2b165125p@chr1:12662045..12662059, -
1.08e-33FFCP PHASE1:Hg19::chr1:12662045..12662059,-#_420985089497d1e71c87d85c2b165125p@chr1:12662045..12662059, -
1.08e-33FFCP PHASE1:Hg19::chr17:80085902..80085908,+#_420985089497d1e71c87d85c2b165125p@chr17:80085902..80085908, +
1.18e-33FFCP PHASE1:Hg19::chr1:235116230..235116241,-#_c44274fa4e6db7f45cdfe38678e24522p@chr1:235116230..235116241, -
1.18e-33FFCP PHASE2:Hg19::chr1:235116230..235116241,-#_c44274fa4e6db7f45cdfe38678e24522p@chr1:235116230..235116241, -
1.27e-33FFCP PHASE2:Hg19::chr14:62036506..62036511,-#_11a64abe7396d6c3075a06ab7546d654p@chr14:62036506..62036511, -
1.27e-33FFCP PHASE1:Hg19::chr14:62036506..62036511,-#_11a64abe7396d6c3075a06ab7546d654p@chr14:62036506..62036511, -
1.48e-33FFCP PHASE1:Hg19::chr4:15964231..15964260,+#_2c3e149c56b6f1285d4c1331ddaad5d6p1@CU693033
1.48e-33FFCP PHASE2:Hg19::chr4:15964231..15964260,+#_2c3e149c56b6f1285d4c1331ddaad5d6p1@CU693033
1.65e-33FFCP PHASE2:Hg19::chr12:10564247..10564267,-#_1b7a889a915ddbe603a9c82ef179c7ecp@chr12:10564247..10564267, -
1.65e-33FFCP PHASE1:Hg19::chr12:10564247..10564267,-#_1b7a889a915ddbe603a9c82ef179c7ecp@chr12:10564247..10564267, -
2.07e-33FFCP PHASE2:Hg19::chr10:126339660..126339674,+#_68bdc28992b5c569cbe58585403399f3p@chr10:126339660..126339674, +
2.07e-33FFCP PHASE1:Hg19::chr10:126339660..126339674,+#_68bdc28992b5c569cbe58585403399f3p@chr10:126339660..126339674, +
2.31e-33FFCP PHASE1:Hg19::chr9:136709727..136709738,+#_9c9fdfcb5128745d469cd3ea5e6082c0p@chr9:136709727..136709738, +
2.31e-33FFCP PHASE2:Hg19::chr9:136709727..136709738,+#_9c9fdfcb5128745d469cd3ea5e6082c0p@chr9:136709727..136709738, +
2.31e-33FFCP PHASE1:Hg19::chr7:3157659..3157673,-#_9c9fdfcb5128745d469cd3ea5e6082c0p@chr7:3157659..3157673, -
2.31e-33FFCP PHASE2:Hg19::chr7:3157659..3157673,-#_9c9fdfcb5128745d469cd3ea5e6082c0p@chr7:3157659..3157673, -
2.58e-33FFCP PHASE1:Hg19::chr17:80840881..80840895,+#_0a01630181ad61d90479646886351a83p@chr17:80840881..80840895, +
2.58e-33FFCP PHASE2:Hg19::chr11:118741219..118741230,+#_0a01630181ad61d90479646886351a83p@chr11:118741219..118741230, +
2.58e-33FFCP PHASE2:Hg19::chr17:80840881..80840895,+#_0a01630181ad61d90479646886351a83p@chr17:80840881..80840895, +
2.58e-33FFCP PHASE1:Hg19::chr11:118741219..118741230,+#_0a01630181ad61d90479646886351a83p@chr11:118741219..118741230, +
3.61e-33FFCP PHASE1:Hg19::chr16:81557949..81557960,-#_71446ab992f836f2774a4f62373a3522p@chr16:81557949..81557960, -
3.61e-33FFCP PHASE2:Hg19::chr16:81557949..81557960,-#_71446ab992f836f2774a4f62373a3522p@chr16:81557949..81557960, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000226&oldid=3271905"