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{{CL
{{CL
|id=CL:0000790
|alt_id=
|name=immature alpha-beta T cell
|namespace=cell;;efo
|def="An alpha-beta T cell that has an immature phenotype and has not completed T cell selection." [GOC:add, GOC:tfm, ISBN:0781735149]
|xref=
|is_a=CL:0000789;;CL:0002420
|synonym="immature alpha-beta T lymphocyte" EXACT [];;"immature alpha-beta T-cell" EXACT [];;"immature alpha-beta T-lymphocyte" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An alpha-beta T cell that has an immature phenotype and has not completed T cell selection." [GOC:add, GOC:tfm, ISBN:0781735149]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000790
|is_a=CL:0000789 ;;CL:0002420
|is_obsolete=
|located_in=
|located_in=
|name=immature alpha-beta T cell
|namespace=cell;;efo
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="immature alpha-beta T lymphocyte" EXACT [];;"immature alpha-beta T-cell" EXACT [];;"immature alpha-beta T-lymphocyte" EXACT []
|union_of=
|xref=
}}
}}

Revision as of 10:21, 12 September 2014

Name:immature alpha-beta T cell
Namespace:cell;;efo
Definition:"An alpha-beta T cell that has an immature phenotype and has not completed T cell selection." [GOC:add, GOC:tfm, ISBN:0781735149]
Synonyms: "immature alpha-beta T lymphocyte" EXACT []
"immature alpha-beta T-cell" EXACT []
"immature alpha-beta T-lymphocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000789(alpha-beta T cell),CL:0002420(immature T cell)



Children


is a:CL:0000809 (double-positive, alpha-beta thymocyte),CL:0000810 (CD4-positive, alpha-beta thymocyte),CL:0000914 (immature NK T cell)
develops from:CL:0000791 (mature alpha-beta T cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000790 (immature alpha-beta T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.82e-125FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_e6c960257014ec9f3b0f1ec3483b4685p@chr5:35859622..35859626, +
4.82e-125FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_e6c960257014ec9f3b0f1ec3483b4685p@chr5:35859622..35859626, +
2.55e-96FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_da17c4eaefdc2bdb98187e3fb3a0ae74p@chr15:89179440..89179457, -
2.55e-96FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_da17c4eaefdc2bdb98187e3fb3a0ae74p@chr15:89179440..89179457, -
1.42e-94FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_ecdf5399abf09a27d14fdf69181688bbp@chr5:35854487..35854499, -
1.42e-94FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_ecdf5399abf09a27d14fdf69181688bbp@chr5:35854487..35854499, -
1.09e-92FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_422e78d8807de835cb16cf480d724c6dp@chr5:35854779..35854826, +
1.09e-92FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_422e78d8807de835cb16cf480d724c6dp@chr5:35854779..35854826, +
4.33e-92FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_73949685289049ba469eb9401b5c4d2ep@chr4:103551892..103551903, -
4.33e-92FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_73949685289049ba469eb9401b5c4d2ep@chr4:103551892..103551903, -
1.97e-90FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_c13075825743dd1dd4acbdb8239ac84ep@chr5:35856882..35856909, -
1.97e-90FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_c13075825743dd1dd4acbdb8239ac84ep@chr5:35856882..35856909, -
2.93e-90FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_79bb3c1cb26b91ee5f24f37a243a7711p1@GTSCR1
2.93e-90FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_79bb3c1cb26b91ee5f24f37a243a7711p1@GTSCR1
5.78e-88FFCP PHASE1:Hg19::chr7:97880779..97880793,+#_0d7c9c2cb592d7943685eb717136e20fp@chr7:97880779..97880793, +
5.78e-88FFCP PHASE2:Hg19::chr7:97880779..97880793,+#_0d7c9c2cb592d7943685eb717136e20fp@chr7:97880779..97880793, +
8.73e-88FFCP PHASE1:Hg19::chr1:25255894..25255906,+#_375b337ad2e84ef108f76b7d938b98bap@chr1:25255894..25255906, +
8.73e-88FFCP PHASE2:Hg19::chr1:25255894..25255906,+#_375b337ad2e84ef108f76b7d938b98bap@chr1:25255894..25255906, +
4.59e-87FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_e49bc4be3ee9d37ba19a60a712a83f1ep10@HNRPLL
4.59e-87FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_e49bc4be3ee9d37ba19a60a712a83f1ep10@HNRPLL
1.31e-86FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_203e0f2adf58a0ef9882a5850b4ab5afp1@ENSMUST00000103733
1.31e-86FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_203e0f2adf58a0ef9882a5850b4ab5afp3@Tnfrsf25
1.31e-86FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_203e0f2adf58a0ef9882a5850b4ab5afp@chr4:32339511..32339518, +
1.31e-86FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_203e0f2adf58a0ef9882a5850b4ab5afp1@uc007tsm.1
1.31e-86FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_203e0f2adf58a0ef9882a5850b4ab5afp@chr6:48637679..48637692, +
1.31e-86FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_203e0f2adf58a0ef9882a5850b4ab5afp@chr19:10869146..10869168, -
1.31e-86FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_203e0f2adf58a0ef9882a5850b4ab5afp1@uc007tsm.1
1.31e-86FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_203e0f2adf58a0ef9882a5850b4ab5afp@chr11:99015330..99015341, -
1.31e-86FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_203e0f2adf58a0ef9882a5850b4ab5afp@chr19:10869146..10869168, -
1.31e-86FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_203e0f2adf58a0ef9882a5850b4ab5afp@chr4:32339511..32339518, +
1.31e-86FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_203e0f2adf58a0ef9882a5850b4ab5afp@chr11:99015330..99015341, -
1.31e-86FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_203e0f2adf58a0ef9882a5850b4ab5afp1@ENSMUST00000103733
1.31e-86FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_203e0f2adf58a0ef9882a5850b4ab5afp@chr6:48637679..48637692, +
1.31e-86FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_203e0f2adf58a0ef9882a5850b4ab5afp3@Tnfrsf25
2.98e-86FFCP PHASE2:Hg19::chr10:14611822..14611844,-#_106efaa98116e05a2f7fa28c5a34f340p@chr10:14611822..14611844, -
2.98e-86FFCP PHASE1:Hg19::chr10:14611822..14611844,-#_106efaa98116e05a2f7fa28c5a34f340p@chr10:14611822..14611844, -
3.57e-86FFCP PHASE2:Hg19::chr4:90205082..90205093,+#_4d8ea01efdbd51268fde0731980c0014p@chr4:90205082..90205093, +
3.57e-86FFCP PHASE1:Hg19::chr4:90205082..90205093,+#_4d8ea01efdbd51268fde0731980c0014p@chr4:90205082..90205093, +
9.89e-85FFCP PHASE1:Hg19::chr16:57162957..57162973,+#_491942319898bebeee8ab400008d0cc4p@chr16:57162957..57162973, +
9.89e-85FFCP PHASE2:Hg19::chr16:57162957..57162973,+#_491942319898bebeee8ab400008d0cc4p@chr16:57162957..57162973, +
1.01e-83FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_26c71318a0dad23d3a9fc12798cc3c6bp@chr2:87053288..87053295, -
1.01e-83FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_26c71318a0dad23d3a9fc12798cc3c6bp@chr2:87053288..87053295, -
1.1e-83FFCP PHASE2:Hg19::chr6:128299606..128299618,+#_e9b7d28ba957183de2fa1af9b1214688p@chr6:128299606..128299618, +
1.1e-83FFCP PHASE2:Hg19::chr11:122709344..122709378,+#_e9b7d28ba957183de2fa1af9b1214688p@chr11:122709344..122709378, +
1.1e-83FFCP PHASE1:Hg19::chr11:122709344..122709378,+#_e9b7d28ba957183de2fa1af9b1214688p@chr11:122709344..122709378, +
1.1e-83FFCP PHASE1:Hg19::chr6:128299606..128299618,+#_e9b7d28ba957183de2fa1af9b1214688p@chr6:128299606..128299618, +
1.69e-83FFCP PHASE1:Hg19::chr5:35780579..35780585,+#_e1bdef9ad35278de8accf5d62f66b1d4p@chr5:35780579..35780585, +
1.69e-83FFCP PHASE2:Hg19::chr5:35780579..35780585,+#_e1bdef9ad35278de8accf5d62f66b1d4p@chr5:35780579..35780585, +
1.02e-82FFCP PHASE1:Hg19::chr5:35859218..35859252,-#_874fc92678ebe1c01fda3dd83b12d078p@chr5:35859218..35859252, -
1.02e-82FFCP PHASE2:Hg19::chr5:35859218..35859252,-#_874fc92678ebe1c01fda3dd83b12d078p@chr5:35859218..35859252, -
1.33e-82FFCP PHASE2:Hg19::chr12:49375076..49375089,-#_78dbfd06a63f156aa8d393e7a03d8d00p@chr12:49375076..49375089, -
1.33e-82FFCP PHASE1:Hg19::chr12:49375076..49375089,-#_78dbfd06a63f156aa8d393e7a03d8d00p@chr12:49375076..49375089, -
3.02e-82FFCP PHASE2:Hg19::chr10:9060907..9060927,-#_f50af08e5869c89bbafed91911443d39p@chr10:9060907..9060927, -
3.02e-82FFCP PHASE1:Hg19::chr10:9060907..9060927,-#_f50af08e5869c89bbafed91911443d39p@chr10:9060907..9060927, -
4.05e-82FFCP PHASE2:Hg19::chr12:10561626..10561641,-#_fb3ef584c86bf0308aea07975f48ec75p@chr12:10561626..10561641, -
4.05e-82FFCP PHASE1:Hg19::chr12:10561626..10561641,-#_fb3ef584c86bf0308aea07975f48ec75p@chr12:10561626..10561641, -
4.31e-82FFCP PHASE2:Hg19::chr7:150178764..150178778,-#_84e6548312b91eed0fa55b91e568a896p@chr7:150178764..150178778, -
4.31e-82FFCP PHASE1:Hg19::chr7:150178764..150178778,-#_84e6548312b91eed0fa55b91e568a896p@chr7:150178764..150178778, -
5.81e-82FFCP PHASE2:Hg19::chr2:182038499..182038509,+#_4f0398d4e8e47f8f3633c6043e8fa8d0p@chr2:182038499..182038509, +
5.81e-82FFCP PHASE1:Hg19::chr2:182038499..182038509,+#_4f0398d4e8e47f8f3633c6043e8fa8d0p@chr2:182038499..182038509, +
1.02e-81FFCP PHASE2:Hg19::chr4:4271366..4271377,-#_0c178b02033f6758db33de1c291b6439p@chr4:4271366..4271377, -
1.02e-81FFCP PHASE1:Hg19::chr4:4271366..4271377,-#_0c178b02033f6758db33de1c291b6439p@chr4:4271366..4271377, -
8.22e-81FFCP PHASE2:Hg19::chr11:108094238..108094253,+#_1732ce444bc3b73a474f683378b613ffp10@ATM
8.22e-81FFCP PHASE1:Hg19::chr11:108094238..108094253,+#_1732ce444bc3b73a474f683378b613ffp10@ATM
2.22e-80FFCP PHASE2:Hg19::chr12:12867774..12867787,-#_f605bea605792660c92711700d567b76p@chr12:12867774..12867787, -
2.22e-80FFCP PHASE1:Hg19::chr12:12867774..12867787,-#_f605bea605792660c92711700d567b76p@chr12:12867774..12867787, -
8.6e-79FFCP PHASE1:Hg19::chr5:67571114..67571129,-#_d5175924d806a96ef8ade160620c4355p@chr5:67571114..67571129, -
8.6e-79FFCP PHASE2:Hg19::chr5:67571114..67571129,-#_d5175924d806a96ef8ade160620c4355p@chr5:67571114..67571129, -
2.3e-78FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_12982197b0a456c3fa36e24c8a0afb04p1@ENSMUST00000103714
2.3e-78FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_12982197b0a456c3fa36e24c8a0afb04p1@ENSMUST00000103714
2.3e-78FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_12982197b0a456c3fa36e24c8a0afb04p@chr5:123440486..123440504, -
2.3e-78FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_12982197b0a456c3fa36e24c8a0afb04p@chr12:74704873..74704900, +
2.3e-78FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_12982197b0a456c3fa36e24c8a0afb04p@chr14:56207154..56207165, -
2.3e-78FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_12982197b0a456c3fa36e24c8a0afb04p@chr14:56207154..56207165, -
2.3e-78FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_12982197b0a456c3fa36e24c8a0afb04p@chr5:123440486..123440504, -
2.3e-78FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_12982197b0a456c3fa36e24c8a0afb04p@chr7:31935025..31935037, +
2.3e-78FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_12982197b0a456c3fa36e24c8a0afb04p@chr8:84082784..84082795, +
2.3e-78FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_12982197b0a456c3fa36e24c8a0afb04p@chr7:31935025..31935037, +
2.3e-78FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_12982197b0a456c3fa36e24c8a0afb04p@chr12:74704873..74704900, +
2.3e-78FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_12982197b0a456c3fa36e24c8a0afb04p@chr8:84082784..84082795, +
2.56e-78FFCP PHASE1:Hg19::chr6:143228788..143228799,-#_b458f5e87f53433f1bd1f9b8af9339fcp@chr6:143228788..143228799, -
2.56e-78FFCP PHASE2:Hg19::chr6:143228788..143228799,-#_b458f5e87f53433f1bd1f9b8af9339fcp@chr6:143228788..143228799, -
2.82e-78FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_a52303727c62da45c0c8fd84b0418811p@chr5:123440767..123440778, +
2.82e-78FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_a52303727c62da45c0c8fd84b0418811p@chr4:32422919..32422935, +
2.82e-78FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_a52303727c62da45c0c8fd84b0418811p@chr14:54838649..54838660, +
2.82e-78FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_a52303727c62da45c0c8fd84b0418811p@chr14:54838649..54838660, +
2.82e-78FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_a52303727c62da45c0c8fd84b0418811p@chr4:32422919..32422935, +
2.82e-78FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_a52303727c62da45c0c8fd84b0418811p@chr5:123440767..123440778, +
3.46e-78FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_86771277fc0a14b603cbec14a9b0137dp@chr15:27786221..27786240, -
3.46e-78FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_86771277fc0a14b603cbec14a9b0137dp@chr15:27786221..27786240, -
4.25e-78FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_18386f6541465440cc970f1f17ab7f0bp@chr6:99215016..99215036, +
4.25e-78FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_18386f6541465440cc970f1f17ab7f0bp@chr3:103672068..103672090, -
4.25e-78FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_18386f6541465440cc970f1f17ab7f0bp@chr6:99215016..99215036, +
4.25e-78FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_18386f6541465440cc970f1f17ab7f0bp@chr3:103672068..103672090, -
5.22e-78FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_4725b729f4d10409e0be41c1f6a23fdap@chr6:48634453..48634468, -
5.22e-78FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_4725b729f4d10409e0be41c1f6a23fdap@chr6:48634453..48634468, -
6.45e-78FFCP PHASE1:Hg19::chr7:36816941..36816949,+#_edb57007deb03a703a3ef969cdfb775cp@chr7:36816941..36816949, +
6.45e-78FFCP PHASE2:Hg19::chr7:36816941..36816949,+#_edb57007deb03a703a3ef969cdfb775cp@chr7:36816941..36816949, +
7.86e-78FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_96022322bd8840b69244e476600cf608p5@uc007vxz.1
7.86e-78FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_96022322bd8840b69244e476600cf608p5@uc007vxz.1

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