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{{CL
{{CL
|id=CL:0002057
|alt_id=
|name=CD14-positive, CD16-negative classical monocyte
|namespace=cell;;efo
|def="A monocyte that is CD14-positive, CD16-negative, CD64-positive, CD163-positive," [GOC:tfm, PMID:15615263, PMID:1706877, PMID:19689341]
|xref=
|is_a=CL:0000860
|synonym=
|comment=Markers are associated with human monocytes.
|comment=Markers are associated with human monocytes.
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-06-05T08:25:41Z
|def="A monocyte that is CD14-positive, CD16-negative, CD64-positive, CD163-positive," [GOC:tfm, PMID:15615263, PMID:1706877, PMID:19689341]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002057
|is_a=CL:0000860 ;;CL:0001054
|is_obsolete=
|located_in=
|located_in=
|name=CD14-positive, CD16-negative classical monocyte
|namespace=cell;;efo
|obo_creation_date=2010-06-05T08:25:41Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Revision as of 10:24, 12 September 2014

Name:CD14-positive, CD16-negative classical monocyte
Namespace:cell;;efo
Definition:"A monocyte that is CD14-positive, CD16-negative, CD64-positive, CD163-positive," [GOC:tfm, PMID:15615263, PMID:1706877, PMID:19689341]
Comments:Markers are associated with human monocytes.
Created by:tmeehan
Creation date:2010-06-05T08:25:41Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000860(classical monocyte),CL:0001054(CD14-positive monocyte)



Children


derives from:FF:0011101 (human CD14-positive monocytes - mock treated sample),FF:0011102 (human CD14-positive monocytes - treated with B-glucan sample),FF:0011103 (human CD14-positive monocytes - treated with BCG sample),FF:0011104 (human CD14-positive monocytes - treated with Candida sample),FF:0011105 (human CD14-positive monocytes - treated with Cryptococcus sample),FF:0011106 (human CD14-positive monocytes - treated with Group A streptococci sample),FF:0011108 (human CD14-positive monocytes - treated with lipopolysaccharide sample),FF:0011109 (human CD14-positive monocytes - treated with Salmonella sample),FF:0011111 (human CD14-positive CD16-negative Monocytes sample),FF:0011443 (CD14-positive monocytes - treated with IFN + N-hexane sample),FF:0011444 (CD14-positive monocytes - treated with Trehalose dimycolate (TDM) sample)
develops from:CL:0002397 (CD14-positive, CD16-positive monocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002057 (CD14-positive, CD16-negative classical monocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.95e-173FFCP PHASE1:Hg19::chr7:44661060..44661101,-#_22afa9f147739011778d4e78fb8e86fcp@chr7:44661060..44661101, -
2.95e-173FFCP PHASE2:Hg19::chr7:44661060..44661101,-#_22afa9f147739011778d4e78fb8e86fcp@chr7:44661060..44661101, -
5.66e-173FFCP PHASE2:Hg19::chr17:72628050..72628077,-#_5031cdabd9f16414c47b3aab75834961p@chr17:72628050..72628077, -
5.66e-173FFCP PHASE1:Hg19::chr17:72628050..72628077,-#_5031cdabd9f16414c47b3aab75834961p@chr17:72628050..72628077, -
3.48e-171FFCP PHASE1:Hg19::chr17:72607002..72607029,+#_1149a9858c74307203edeecc54cc7a0cp@chr17:72607002..72607029, +
3.48e-171FFCP PHASE2:Hg19::chr17:72607002..72607029,+#_1149a9858c74307203edeecc54cc7a0cp@chr17:72607002..72607029, +
2.61e-167FFCP PHASE2:Hg19::chr17:72606825..72606838,-#_920652704d9b1782694e5aed8be1dfd2p@chr17:72606825..72606838, -
2.61e-167FFCP PHASE1:Hg19::chr17:72606825..72606838,-#_920652704d9b1782694e5aed8be1dfd2p@chr17:72606825..72606838, -
1.41e-166FFCP PHASE2:Hg19::chr17:72607152..72607174,-#_b25b34adcdba43e53d77079996f2a541p@chr17:72607152..72607174, -
1.41e-166FFCP PHASE1:Hg19::chr17:72607152..72607174,-#_b25b34adcdba43e53d77079996f2a541p@chr17:72607152..72607174, -
1.31e-165FFCP PHASE2:Hg19::chr17:72607351..72607373,-#_789757a9a6ea839876e5c79936ca7dc4p@chr17:72607351..72607373, -
1.31e-165FFCP PHASE1:Hg19::chr17:72607351..72607373,-#_789757a9a6ea839876e5c79936ca7dc4p@chr17:72607351..72607373, -
8.2e-165FFCP PHASE1:Hg19::chr1:120593738..120593745,+#_0c72f755f17fa0abb439f6f7434a0ed1p@chr1:120593738..120593745, +
8.2e-165FFCP PHASE2:Hg19::chr1:120593738..120593745,+#_0c72f755f17fa0abb439f6f7434a0ed1p@chr1:120593738..120593745, +
1.7e-164FFCP PHASE1:Hg19::chr14:55249943..55249971,+#_ea7f750482939580e6991779295c4ffep@chr14:55249943..55249971, +
1.7e-164FFCP PHASE2:Hg19::chr14:55249943..55249971,+#_ea7f750482939580e6991779295c4ffep@chr14:55249943..55249971, +
6.24e-163FFCP PHASE2:Hg19::chr8:11754835..11754867,-#_1a85c21058f7f1478bf61d4708a18735p1@ENST00000525252
6.24e-163FFCP PHASE1:Hg19::chr8:11754835..11754867,-#_1a85c21058f7f1478bf61d4708a18735p1@ENST00000525252
2.9e-162FFCP PHASE1:Hg19::chr12:125197870..125197907,+#_02abadb934cf0b30e50a4b3f86adec77p@chr12:125197870..125197907, +
2.9e-162FFCP PHASE2:Hg19::chr12:125197870..125197907,+#_02abadb934cf0b30e50a4b3f86adec77p@chr12:125197870..125197907, +
2.93e-162FFCP PHASE1:Hg19::chr17:72606678..72606702,-#_d1e6c733ef1257015c390bffb7786e82p@chr17:72606678..72606702, -
2.93e-162FFCP PHASE2:Hg19::chr17:72606678..72606702,-#_d1e6c733ef1257015c390bffb7786e82p@chr17:72606678..72606702, -
3.23e-162FFCP PHASE2:Hg19::chr22:17717917..17717939,-#_6857c8912e1224a02cff65382760876fp@chr22:17717917..17717939, -
3.23e-162FFCP PHASE1:Hg19::chr22:17717917..17717939,-#_6857c8912e1224a02cff65382760876fp@chr22:17717917..17717939, -
4.13e-162FFCP PHASE2:Hg19::chr5:156534439..156534470,+#_fce8dfee879118a97da5c10f04da6abap@chr5:156534439..156534470, +
4.13e-162FFCP PHASE1:Hg19::chr5:156534439..156534470,+#_fce8dfee879118a97da5c10f04da6abap@chr5:156534439..156534470, +
1.23e-161FFCP PHASE1:Hg19::chr9:137300477..137300490,+#_08c074f810217b16ac511c064681a810p@chr9:137300477..137300490, +
1.23e-161FFCP PHASE2:Hg19::chr9:137300477..137300490,+#_08c074f810217b16ac511c064681a810p@chr9:137300477..137300490, +
6.16e-160FFCP PHASE2:Hg19::chr1:149901972..149901989,-#_2a06eae5b652091f329a5c1373925156p@chr1:149901972..149901989, -
6.16e-160FFCP PHASE1:Hg19::chr1:149901972..149901989,-#_2a06eae5b652091f329a5c1373925156p@chr1:149901972..149901989, -
3.22e-159FFCP PHASE2:Hg19::chr2:145276939..145276960,+#_3f00d95f06ca5b385a69efb8457d8c37p2@ZEB2-AS1
3.22e-159FFCP PHASE1:Hg19::chr2:145276939..145276960,+#_3f00d95f06ca5b385a69efb8457d8c37p2@ZEB2-AS1
4.01e-159FFCP PHASE1:Hg19::chr11:68847955..68847972,-#_a0870690a18bf5b9cbc943211a464bd7p@chr11:68847955..68847972, -
4.01e-159FFCP PHASE2:Hg19::chr11:68847955..68847972,-#_a0870690a18bf5b9cbc943211a464bd7p@chr11:68847955..68847972, -
1.14e-158FFCP PHASE2:Hg19::chr11:68847043..68847057,+#_3d51ff7e57cde12eef99a9417b9454d9p@chr11:68847043..68847057, +
1.14e-158FFCP PHASE1:Hg19::chr11:68847043..68847057,+#_3d51ff7e57cde12eef99a9417b9454d9p@chr11:68847043..68847057, +
5.8e-158FFCP PHASE2:Hg19::chr1:108592890..108592921,-#_074603cb9e2dc2482d7fa81189809bacp@chr1:108592890..108592921, -
5.8e-158FFCP PHASE1:Hg19::chr1:108592890..108592921,-#_074603cb9e2dc2482d7fa81189809bacp@chr1:108592890..108592921, -
2.44e-157FFCP PHASE1:Hg19::chr7:949680..949694,-#_49d606713c62ceb683137acf8cf1e396p@chr7:949680..949694, -
2.44e-157FFCP PHASE2:Hg19::chr7:949680..949694,-#_49d606713c62ceb683137acf8cf1e396p@chr7:949680..949694, -
4.86e-157FFCP PHASE2:Hg19::chr7:48009999..48010016,+#_61b7747d0f1e0d0f4bbb9a8310722492p@chr7:48009999..48010016, +
4.86e-157FFCP PHASE1:Hg19::chr7:48009999..48010016,+#_61b7747d0f1e0d0f4bbb9a8310722492p@chr7:48009999..48010016, +
5.49e-157FFCP PHASE2:Hg19::chr4:185314351..185314392,+#_a8344e94bd578151b51d05678c915435p@chr4:185314351..185314392, +
5.49e-157FFCP PHASE1:Hg19::chr4:185314351..185314392,+#_a8344e94bd578151b51d05678c915435p@chr4:185314351..185314392, +
8.29e-157FFCP PHASE2:Hg19::chr16:82229835..82229848,+#_ff512b36cbd0038c3e03c559b732c838p@chr16:82229835..82229848, +
8.29e-157FFCP PHASE1:Hg19::chr16:82229835..82229848,+#_ff512b36cbd0038c3e03c559b732c838p@chr16:82229835..82229848, +
2.1e-156FFCP PHASE2:Hg19::chr20:5634031..5634046,+#_570ce5639ca79857c6ce8fb41c270235p@chr20:5634031..5634046, +
2.1e-156FFCP PHASE1:Hg19::chr20:5634031..5634046,+#_570ce5639ca79857c6ce8fb41c270235p@chr20:5634031..5634046, +
4.29e-156FFCP PHASE2:Hg19::chr4:159731607..159731627,+#_367c3767ee4733ffa2686bef9a960566p@chr4:159731607..159731627, +
4.29e-156FFCP PHASE1:Hg19::chr4:159731607..159731627,+#_367c3767ee4733ffa2686bef9a960566p@chr4:159731607..159731627, +
1.66e-155FFCP PHASE1:Hg19::chr9:102353301..102353315,-#_ec2341076c23c741f54624dc03de1ec9p@chr9:102353301..102353315, -
1.66e-155FFCP PHASE2:Hg19::chr9:102353301..102353315,-#_ec2341076c23c741f54624dc03de1ec9p@chr9:102353301..102353315, -
3.6e-155FFCP PHASE1:Hg19::chr2:145450907..145450928,-#_b569d489d78b8ff52e104589fbef7423p@chr2:145450907..145450928, -
3.6e-155FFCP PHASE2:Hg19::chr2:145450907..145450928,-#_b569d489d78b8ff52e104589fbef7423p@chr2:145450907..145450928, -
3.76e-155FFCP PHASE2:Hg19::chr17:72628206..72628246,+#_e296b31fbff6497d31fe5386b1ae0f39p@chr17:72628206..72628246, +
3.76e-155FFCP PHASE1:Hg19::chr17:72628206..72628246,+#_e296b31fbff6497d31fe5386b1ae0f39p@chr17:72628206..72628246, +
1.6e-154FFCP PHASE2:Hg19::chr8:11755021..11755054,+#_6dbd73dc9cc72f5d9f7ed2ed3253d241p@chr8:11755021..11755054, +
1.6e-154FFCP PHASE1:Hg19::chr8:11755021..11755054,+#_6dbd73dc9cc72f5d9f7ed2ed3253d241p@chr8:11755021..11755054, +
1.99e-154FFCP PHASE2:Hg19::chr2:145421047..145421067,+#_9c15f60f2147874652002f8d89bce4cfp@chr2:145421047..145421067, +
1.99e-154FFCP PHASE1:Hg19::chr2:145421047..145421067,+#_9c15f60f2147874652002f8d89bce4cfp@chr2:145421047..145421067, +
4.18e-154FFCP PHASE2:Hg19::chr6:106348152..106348164,+#_66cf2afdb3d8ba2f13fb21a1475f7dd3p@chr6:106348152..106348164, +
4.18e-154FFCP PHASE1:Hg19::chr6:106348152..106348164,+#_66cf2afdb3d8ba2f13fb21a1475f7dd3p@chr6:106348152..106348164, +
9.99e-154FFCP PHASE1:Hg19::chr16:17469894..17469904,+#_c754605fb66ffca3f0515d81db029ef2p@chr16:17469894..17469904, +
9.99e-154FFCP PHASE2:Hg19::chr16:17469894..17469904,+#_c754605fb66ffca3f0515d81db029ef2p@chr16:17469894..17469904, +
1.29e-153FFCP PHASE1:Hg19::chr1:40006573..40006589,-#_01b631deab7019aa5e44083a2c9c816fp@chr1:40006573..40006589, -
1.29e-153FFCP PHASE2:Hg19::chr1:40006573..40006589,-#_01b631deab7019aa5e44083a2c9c816fp@chr1:40006573..40006589, -
1.38e-153FFCP PHASE1:Hg19::chr7:111720716..111720750,+#_04299f4de0a05a962a0f8496a23a5818p@chr7:111720716..111720750, +
1.38e-153FFCP PHASE2:Hg19::chr7:111720716..111720750,+#_04299f4de0a05a962a0f8496a23a5818p@chr7:111720716..111720750, +
1.95e-153FFCP PHASE2:Hg19::chr3:128943968..128943986,+#_33509fd9a650e9aefc093fbe0accef0fp@chr3:128943968..128943986, +
1.95e-153FFCP PHASE1:Hg19::chr3:128943968..128943986,+#_33509fd9a650e9aefc093fbe0accef0fp@chr3:128943968..128943986, +
3.44e-153FFCP PHASE2:Hg19::chr2:58339774..58339779,-#_44826a13236192cb3f9b0189f536e638p@chr2:58339774..58339779, -
3.44e-153FFCP PHASE1:Hg19::chr2:58339774..58339779,-#_44826a13236192cb3f9b0189f536e638p@chr2:58339774..58339779, -
4.04e-153FFCP PHASE1:Hg19::chr11:61737685..61737701,-#_e7896173d41d915780508f0396fa9627p@chr11:61737685..61737701, -
4.04e-153FFCP PHASE2:Hg19::chr11:61737685..61737701,-#_e7896173d41d915780508f0396fa9627p@chr11:61737685..61737701, -
5.57e-153FFCP PHASE1:Hg19::chr11:10921401..10921434,-#_7b58501ac869955f606505a72e90b50cp@chr11:10921401..10921434, -
5.57e-153FFCP PHASE2:Hg19::chr11:10921401..10921434,-#_7b58501ac869955f606505a72e90b50cp@chr11:10921401..10921434, -
2.07e-152FFCP PHASE1:Hg19::chr1:212659324..212659370,-#_15d17b9c25db6dea4ecce56facdd39ecp@chr1:212659324..212659370, -
2.07e-152FFCP PHASE2:Hg19::chr1:212659324..212659370,-#_15d17b9c25db6dea4ecce56facdd39ecp@chr1:212659324..212659370, -
2.23e-152FFCP PHASE1:Hg19::chr19:4812881..4812891,-#_466c6d2afffab95d23f6e2bfd49c2209p@chr19:4812881..4812891, -
2.23e-152FFCP PHASE2:Hg19::chr19:4812881..4812891,-#_466c6d2afffab95d23f6e2bfd49c2209p@chr19:4812881..4812891, -
3.99e-152FFCP PHASE1:Hg19::chr18:13577406..13577430,-#_f7f2ecd8177a2bb84c788a93c5817bdap@chr18:13577406..13577430, -
3.99e-152FFCP PHASE2:Hg19::chr18:13577406..13577430,-#_f7f2ecd8177a2bb84c788a93c5817bdap@chr18:13577406..13577430, -
4.17e-152FFCP PHASE1:Hg19::chr9:137264021..137264038,+#_215f5ed98df0395c0e14b084bc702180p@chr9:137264021..137264038, +
4.17e-152FFCP PHASE2:Hg19::chr9:137264021..137264038,+#_215f5ed98df0395c0e14b084bc702180p@chr9:137264021..137264038, +
4.44e-152FFCP PHASE2:Hg19::chr8:48173159..48173173,+#_0e63b3ff4e33b1710368c075ac67dbe1p6@KIAA0146
4.44e-152FFCP PHASE1:Hg19::chr8:48173159..48173173,+#_0e63b3ff4e33b1710368c075ac67dbe1p6@KIAA0146
6.49e-152FFCP PHASE2:Hg19::chr8:71452856..71452863,+#_eb9e14c2f38bd40e94e5f0614b19ae09p@chr8:71452856..71452863, +
6.49e-152FFCP PHASE1:Hg19::chr8:71452856..71452863,+#_eb9e14c2f38bd40e94e5f0614b19ae09p@chr8:71452856..71452863, +
6.68e-152FFCP PHASE1:Hg19::chr22:28065655..28065677,+#_f99d5a03c36c2e21a354128ad1efb046p@chr22:28065655..28065677, +
6.68e-152FFCP PHASE2:Hg19::chr22:28065655..28065677,+#_f99d5a03c36c2e21a354128ad1efb046p@chr22:28065655..28065677, +
1.17e-151FFCP PHASE1:Hg19::chr20:5626328..5626343,+#_15cbca1b83b320938ee67b0533410527p@chr20:5626328..5626343, +
1.17e-151FFCP PHASE2:Hg19::chr20:5626328..5626343,+#_15cbca1b83b320938ee67b0533410527p@chr20:5626328..5626343, +
2.27e-151FFCP PHASE1:Hg19::chr7:151622937..151622965,-#_cd29003e24afa0772ecf8a931ef1bf6cp@chr7:151622937..151622965, -
2.27e-151FFCP PHASE2:Hg19::chr7:151622937..151622965,-#_cd29003e24afa0772ecf8a931ef1bf6cp@chr7:151622937..151622965, -
6.5e-151FFCP PHASE1:Hg19::chr17:72635873..72635891,-#_58b89f66282a13ab3a4f86c342f343f8p@chr17:72635873..72635891, -
6.5e-151FFCP PHASE2:Hg19::chr17:72635873..72635891,-#_58b89f66282a13ab3a4f86c342f343f8p@chr17:72635873..72635891, -
1.04e-150FFCP PHASE1:Hg19::chr17:72636264..72636304,+#_7d7a2b0a1acd4361d4b06e92ae685383p@chr17:72636264..72636304, +
1.04e-150FFCP PHASE2:Hg19::chr17:72636264..72636304,+#_7d7a2b0a1acd4361d4b06e92ae685383p@chr17:72636264..72636304, +
1.28e-150FFCP PHASE1:Hg19::chr7:2814742..2814772,+#_cab6ca5bba5a24bf7ca4b7660deb8d23p@chr7:2814742..2814772, +
1.28e-150FFCP PHASE2:Hg19::chr7:2814742..2814772,+#_cab6ca5bba5a24bf7ca4b7660deb8d23p@chr7:2814742..2814772, +

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