Personal tools

CL:0002139: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{CL
{{CL
|id=CL:0002139
|alt_id=
|name=endothelial cell of vascular tree
|namespace=cell
|def="An endothelial cell of the vascular tree, which includes blood vessels and lymphatic vessels." [GOC:dsd, GOC:tfm, PMID:12768659]
|xref=BTO:0001854;;FMA:67755
|is_a=CL:0000115
|synonym="cubodial endothelial cell of vascular tree" NARROW [];;"vascular endothelial cell" EXACT []
|comment=These cells are reportedly CD31-positive, CD34-positive, CD144-positive, TAL1-positive.
|comment=These cells are reportedly CD31-positive, CD34-positive, CD144-positive, TAL1-positive.
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-08-24T02:06:40Z
|def="An endothelial cell of the vascular tree, which includes blood vessels and lymphatic vessels." [GOC:dsd, GOC:tfm, PMID:12768659]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002139
|is_a=CL:0000115
|is_obsolete=
|located_in=
|located_in=
|name=endothelial cell of vascular tree
|namespace=cell
|obo_creation_date=2010-08-24T02:06:40Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="cubodial endothelial cell of vascular tree" NARROW [];;"vascular endothelial cell" EXACT []
|union_of=
|xref=BTO:0001854;;FMA:67755
}}
}}

Revision as of 10:24, 12 September 2014

Name:endothelial cell of vascular tree
Namespace:cell
Definition:"An endothelial cell of the vascular tree, which includes blood vessels and lymphatic vessels." [GOC:dsd, GOC:tfm, PMID:12768659]
Xrefs:
links:

BTO:0001854

FMA:67755
Synonyms: "cubodial endothelial cell of vascular tree" NARROW []
"vascular endothelial cell" EXACT []
Comments:These cells are reportedly CD31-positive, CD34-positive, CD144-positive, TAL1-positive.
Created by:tmeehan
Creation date:2010-08-24T02:06:40Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000115(endothelial cell)



Children


is a:CL:0000071 (blood vessel endothelial cell),CL:0002138 (endothelial cell of lymphatic vessel)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002139 (endothelial cell of vascular tree), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-154FFCP PHASE1:Hg19::chr2:56216687..56216727,-#_adbffa72407eed2a6247d6f81abab477p1@MIR216A
1.55e-154FFCP PHASE2:Hg19::chr2:56216687..56216727,-#_adbffa72407eed2a6247d6f81abab477p1@MIR216A
2.28e-144FFCP PHASE2:Hg19::chrX:15518894..15518905,+#_2cf60036a85ac774b78a7fd339c7500ap2@BMX
2.28e-144FFCP PHASE1:Hg19::chrX:15518894..15518905,+#_2cf60036a85ac774b78a7fd339c7500ap2@BMX
4.58e-141FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_501e65bd357b8e4497cbea4ec7aa99adp@chr6:3753188..3753192, -
4.58e-141FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_501e65bd357b8e4497cbea4ec7aa99adp@chr6:3753188..3753192, -
1.28e-139FFCP PHASE2:Hg19::chr18:33046982..33046991,-#_36ce236ceb6a73eb5a3805c7afdeb0e8p@chr18:33046982..33046991, -
1.28e-139FFCP PHASE1:Hg19::chr18:33046982..33046991,-#_36ce236ceb6a73eb5a3805c7afdeb0e8p@chr18:33046982..33046991, -
9.25e-136FFCP PHASE2:Hg19::chr12:118112251..118112272,-#_af5824a2325e8f89f2b17791d7f7445bp12@KSR2
9.25e-136FFCP PHASE1:Hg19::chr12:118112251..118112272,-#_af5824a2325e8f89f2b17791d7f7445bp12@KSR2
7.14e-135FFCP PHASE1:Hg19::chr11:124761247..124761258,-#_30509fff6e5a442c10eb0bca0909c69cp@chr11:124761247..124761258, -
7.14e-135FFCP PHASE2:Hg19::chr11:124761247..124761258,-#_30509fff6e5a442c10eb0bca0909c69cp@chr11:124761247..124761258, -
2.75e-133FFCP PHASE1:Hg19::chr5:176433333..176433349,-#_c6fb8db4158a0928dfa47ba97c591478p11@UIMC1
2.75e-133FFCP PHASE2:Hg19::chr5:176433333..176433349,-#_c6fb8db4158a0928dfa47ba97c591478p11@UIMC1
4.48e-133FFCP PHASE2:Hg19::chr10:99655692..99655725,-#_0458349b6f84c1e24da2003ce3cf637cp@chr10:99655692..99655725, -
4.48e-133FFCP PHASE1:Hg19::chr10:99655692..99655725,-#_0458349b6f84c1e24da2003ce3cf637cp@chr10:99655692..99655725, -
1.74e-130FFCP PHASE2:Hg19::chr17:62084108..62084111,-#_82f6c8117491a3fe8931ae7cd9db8d44p5@ICAM2
1.74e-130FFCP PHASE1:Hg19::chr17:62084108..62084111,-#_82f6c8117491a3fe8931ae7cd9db8d44p5@ICAM2
5.04e-127FFCP PHASE1:Hg19::chrX:71299684..71299699,+#_210bb6a85af43f806a67007e37e1d3d2p@chrX:71299684..71299699, +
5.04e-127FFCP PHASE2:Hg19::chrX:71299684..71299699,+#_210bb6a85af43f806a67007e37e1d3d2p@chrX:71299684..71299699, +
2.83e-122FFCP PHASE1:Hg19::chr10:50153703..50153720,+#_8b2cfd83f289f39727c69c4b798c8570p7@WDFY4
2.83e-122FFCP PHASE2:Hg19::chr10:50153703..50153720,+#_8b2cfd83f289f39727c69c4b798c8570p7@WDFY4
3.33e-122FFCP PHASE2:Hg19::chr7:150329732..150329739,-#_92462ab7d4b0359b568bb64eb859f689p8@GIMAP6
3.33e-122FFCP PHASE1:Hg19::chr7:150329732..150329739,-#_92462ab7d4b0359b568bb64eb859f689p8@GIMAP6
7.0e-122FFCP PHASE2:Hg19::chr10:129785574..129785580,+#_969b03d90a33539e81db4b54525135bbp14@PTPRE
7.0e-122FFCP PHASE1:Hg19::chr10:129785574..129785580,+#_969b03d90a33539e81db4b54525135bbp14@PTPRE
1.1e-120FFCP PHASE2:Hg19::chr19:41985048..41985050,-#_d5cfbbd6a1bc19ca9f80b86a21f580a7p@chr19:41985048..41985050, -
1.1e-120FFCP PHASE1:Hg19::chr19:41985048..41985050,-#_d5cfbbd6a1bc19ca9f80b86a21f580a7p@chr19:41985048..41985050, -
1.74e-118FFCP PHASE2:Hg19::chr16:2220383..2220402,+#_fc7f7926804213d03c2691389ba51718p@chr16:2220383..2220402, +
1.74e-118FFCP PHASE1:Hg19::chr16:2220383..2220402,+#_fc7f7926804213d03c2691389ba51718p@chr16:2220383..2220402, +
1.27e-117FFCP PHASE2:Hg19::chr12:105863705..105863718,+#_60e0e26a9d386299339f658bdbbc1dbfp@chr12:105863705..105863718, +
1.27e-117FFCP PHASE1:Hg19::chr12:105863705..105863718,+#_60e0e26a9d386299339f658bdbbc1dbfp@chr12:105863705..105863718, +
2.26e-117FFCP PHASE2:Hg19::chr10:50153735..50153750,+#_fea1226c8bda33472e362780be738cd6p6@WDFY4
2.26e-117FFCP PHASE1:Hg19::chr10:50153735..50153750,+#_fea1226c8bda33472e362780be738cd6p6@WDFY4
6.39e-117FFCP PHASE2:Hg19::chr5:95920642..95920681,+#_8803a480cb3bdfafeecf65c07dfab652p1@ENST00000513158
6.39e-117FFCP PHASE1:Hg19::chr5:95920642..95920681,+#_8803a480cb3bdfafeecf65c07dfab652p1@ENST00000513158
1.02e-116FFCP PHASE2:Hg19::chr12:105863636..105863650,+#_3964ae4bce6a4368f8a6140c7f668feap@chr12:105863636..105863650, +
1.02e-116FFCP PHASE1:Hg19::chr12:105863636..105863650,+#_3964ae4bce6a4368f8a6140c7f668feap@chr12:105863636..105863650, +
4.0e-116FFCP PHASE2:Hg19::chr12:71031220..71031229,-#_44a5a16f186fc60f69330c1904cc287fp10@PTPRB
4.0e-116FFCP PHASE1:Hg19::chr12:71031220..71031229,-#_44a5a16f186fc60f69330c1904cc287fp10@PTPRB
1.77e-114FFCP PHASE2:Hg19::chr6:78171774..78171792,+#_ee79222b0110dafaaaf2930480741b80p@chr6:78171774..78171792, +
1.77e-114FFCP PHASE1:Hg19::chr6:78171774..78171792,+#_ee79222b0110dafaaaf2930480741b80p@chr6:78171774..78171792, +
1.5e-113FFCP PHASE1:Hg19::chr5:34656634..34656645,+#_a5f0c26fcf8fb8a30ef48b2580abafd2p15@RAI14
1.5e-113FFCP PHASE2:Hg19::chr5:34656634..34656645,+#_a5f0c26fcf8fb8a30ef48b2580abafd2p15@RAI14
8.52e-113FFCP PHASE2:Hg19::chr18:33047157..33047168,-#_ab482fa432d996069436f0561bdb430ap@chr18:33047157..33047168, -
8.52e-113FFCP PHASE1:Hg19::chr18:33047157..33047168,-#_ab482fa432d996069436f0561bdb430ap@chr18:33047157..33047168, -
5.18e-112FFCP PHASE2:Hg19::chr2:225266779..225266786,-#_84f825b8783a06848c9d5cad0878f130p4@FAM124B
5.18e-112FFCP PHASE1:Hg19::chr2:225266779..225266786,-#_84f825b8783a06848c9d5cad0878f130p4@FAM124B
1.31e-111FFCP PHASE1:Hg19::chr13:32835894..32835907,+#_268884be3a3cb8902fa782504b0dfdacp@chr13:32835894..32835907, +
1.31e-111FFCP PHASE2:Hg19::chr13:32835894..32835907,+#_268884be3a3cb8902fa782504b0dfdacp@chr13:32835894..32835907, +
1.71e-111FFCP PHASE2:Hg19::chr6:148664333..148664338,-#_67c833001d3e09cefac49eb7c6720102p@chr6:148664333..148664338, -
1.71e-111FFCP PHASE1:Hg19::chr6:148664333..148664338,-#_67c833001d3e09cefac49eb7c6720102p@chr6:148664333..148664338, -
2.44e-111FFCP PHASE2:Hg19::chr15:39423060..39423066,+#_3377112082a596ed2f6f297d0b28843ap@chr15:39423060..39423066, +
2.44e-111FFCP PHASE1:Hg19::chr15:39423060..39423066,+#_3377112082a596ed2f6f297d0b28843ap@chr15:39423060..39423066, +
6.14e-111FFCP PHASE1:Hg19::chr18:33047117..33047138,-#_077a3f31085b35ef71288555d2852330p@chr18:33047117..33047138, -
6.14e-111FFCP PHASE2:Hg19::chr18:33047117..33047138,-#_077a3f31085b35ef71288555d2852330p@chr18:33047117..33047138, -
4.2e-107FFCP PHASE2:Hg19::chr12:105863654..105863682,+#_5ad9a0e679450cde8101127acb205780p@chr12:105863654..105863682, +
4.2e-107FFCP PHASE1:Hg19::chr12:105863654..105863682,+#_5ad9a0e679450cde8101127acb205780p@chr12:105863654..105863682, +
1.06e-106FFCP PHASE2:Hg19::chr13:32835912..32835936,+#_58fc571e55ce5ed198fbbc0e639a8844p@chr13:32835912..32835936, +
1.06e-106FFCP PHASE1:Hg19::chr13:32835912..32835936,+#_58fc571e55ce5ed198fbbc0e639a8844p@chr13:32835912..32835936, +
4.13e-106FFCP PHASE2:Hg19::chr12:80084018..80084035,-#_7f0e49d6fe032daf89fa483b256e3486p17@PAWR
4.13e-106FFCP PHASE1:Hg19::chr12:80084018..80084035,-#_7f0e49d6fe032daf89fa483b256e3486p17@PAWR
4.57e-106FFCP PHASE2:Hg19::chr12:96830523..96830532,+#_4f1652539e074aac6067d3d0638a33f8p@chr12:96830523..96830532, +
4.57e-106FFCP PHASE1:Hg19::chr12:96830523..96830532,+#_4f1652539e074aac6067d3d0638a33f8p@chr12:96830523..96830532, +
7.72e-104FFCP PHASE2:Hg19::chr6:132455180..132455197,+#_59d121f90faded2e639a58c41072d77ep2@LOC100507254
7.72e-104FFCP PHASE1:Hg19::chr6:132455180..132455197,+#_59d121f90faded2e639a58c41072d77ep2@LOC100507254
1.54e-103FFCP PHASE2:Hg19::chrX:107068687..107068703,+#_cbc8a99eb0332327d148f5e92f50cccbp6@MID2
1.54e-103FFCP PHASE1:Hg19::chrX:107068687..107068703,+#_cbc8a99eb0332327d148f5e92f50cccbp6@MID2
7.27e-103FFCP PHASE1:Hg19::chr6:78171746..78171769,+#_48b6399cfc66bd4634bdafb3449ac70bp@chr6:78171746..78171769, +
7.27e-103FFCP PHASE2:Hg19::chr6:78171746..78171769,+#_48b6399cfc66bd4634bdafb3449ac70bp@chr6:78171746..78171769, +
2.59e-102FFCP PHASE2:Hg19::chr12:71031247..71031262,-#_f6d79f7952c0c770811fc679bc5bf63bp7@PTPRB
2.59e-102FFCP PHASE1:Hg19::chr12:71031247..71031262,-#_f6d79f7952c0c770811fc679bc5bf63bp7@PTPRB
2.89e-101FFCP PHASE1:Hg19::chr4:5035083..5035101,-#_48e38a6a872410b35b06f7355b15348bp@chr4:5035083..5035101, -
2.89e-101FFCP PHASE2:Hg19::chr4:5035083..5035101,-#_48e38a6a872410b35b06f7355b15348bp@chr4:5035083..5035101, -
9.14e-101FFCP PHASE1:Hg19::chr11:57543275..57543296,+#_d66a5fea2f7f117efd2bcb63f7925cd3p@chr11:57543275..57543296, +
9.14e-101FFCP PHASE2:Hg19::chr11:57543275..57543296,+#_d66a5fea2f7f117efd2bcb63f7925cd3p@chr11:57543275..57543296, +
1.61e-100FFCP PHASE2:Hg19::chr14:38725228..38725236,-#_7ecb3a286b4b0d1671b722400c8dcd92p5@CLEC14A
1.61e-100FFCP PHASE1:Hg19::chr14:38725228..38725236,-#_7ecb3a286b4b0d1671b722400c8dcd92p5@CLEC14A
3.71e-100FFCP PHASE1:Hg19::chr6:132455157..132455176,+#_47a52a23addb7e1cf5b5ebf87828fcd9p1@LOC100507254
3.71e-100FFCP PHASE2:Hg19::chr6:132455157..132455176,+#_47a52a23addb7e1cf5b5ebf87828fcd9p1@LOC100507254
2.24e-99FFCP PHASE2:Hg19::chr14:75469820..75469826,+#_bbc7d11dbb9747c6974527b568726a41p4@EIF2B2
2.24e-99FFCP PHASE1:Hg19::chr14:75469820..75469826,+#_bbc7d11dbb9747c6974527b568726a41p4@EIF2B2
2.39e-99FFCP PHASE2:Hg19::chr7:139741594..139741615,-#_880be9c6b04bb3d95d3faf0227a8967bp5@PARP12
2.39e-99FFCP PHASE1:Hg19::chr7:139741594..139741615,-#_880be9c6b04bb3d95d3faf0227a8967bp5@PARP12
5.71e-99FFCP PHASE1:Hg19::chr3:58034268..58034295,+#_aa88801d48ee2c763916556314df86d2p@chr3:58034268..58034295, +
5.71e-99FFCP PHASE2:Hg19::chr3:58034268..58034295,+#_aa88801d48ee2c763916556314df86d2p@chr3:58034268..58034295, +
6.74e-99FFCP PHASE2:Hg19::chr13:32838839..32838850,+#_c00438c9c8cc7372ca4ddc0bd055c01cp20@FRY
6.74e-99FFCP PHASE1:Hg19::chr13:32838839..32838850,+#_c00438c9c8cc7372ca4ddc0bd055c01cp20@FRY
2.02e-98FFCP PHASE1:Hg19::chr12:12491541..12491552,-#_ec00d5f9bacdd312292a50bc4dc8d378p11@MANSC1
2.02e-98FFCP PHASE2:Hg19::chr12:12491541..12491552,-#_ec00d5f9bacdd312292a50bc4dc8d378p11@MANSC1
1.09e-97FFCP PHASE2:Hg19::chr14:38725249..38725254,-#_26de4ae5b18daaec5e338b95d009d4f5p6@CLEC14A
1.09e-97FFCP PHASE1:Hg19::chr14:38725249..38725254,-#_26de4ae5b18daaec5e338b95d009d4f5p6@CLEC14A
2.04e-97FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_554fb4a60089092656bf2f3880c7d07ep@chr3:43538305..43538325, -
2.04e-97FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_554fb4a60089092656bf2f3880c7d07ep@chr3:43538305..43538325, -
2.53e-97FFCP PHASE2:Hg19::chr5:71853090..71853107,+#_981d31f9eaea61d33c1ede0aea876d75p@chr5:71853090..71853107, +
2.53e-97FFCP PHASE1:Hg19::chr5:71853090..71853107,+#_981d31f9eaea61d33c1ede0aea876d75p@chr5:71853090..71853107, +
6.25e-97FFCP PHASE2:Hg19::chr15:39542867..39542890,+#_9662a362cdb123f9da5eece0dd56ea94p1@C15orf54
6.25e-97FFCP PHASE1:Hg19::chr15:39542867..39542890,+#_9662a362cdb123f9da5eece0dd56ea94p1@C15orf54
1.49e-96FFCP PHASE1:Hg19::chr17:75137460..75137485,+#_b41aafb9acf983df2cf90ebf1d29e3e0p@chr17:75137460..75137485, +
1.49e-96FFCP PHASE2:Hg19::chr17:75137460..75137485,+#_b41aafb9acf983df2cf90ebf1d29e3e0p@chr17:75137460..75137485, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0002139&oldid=3272078"