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{{CL
{{CL
|id=CL:0002433
|alt_id=
|name=CD69-positive, CD4-positive single-positive thymocyte
|namespace=cell;;efo
|def="A CD4-positive, CD8-negative thymocyte that expresses high levels of the alpha-beta T cell receptor and is CD69-positive." [GOC:tfm, http://www.immgen.org/index_content.html]
|xref=
|is_a=CL:0000810
|synonym="intermediate CD4-single-positive" EXACT [];;"T.4SP69+.Th" EXACT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2010-10-21T02:46:02Z
|def="A CD4-positive, CD8-negative thymocyte that expresses high levels of the alpha-beta T cell receptor and is CD69-positive." [GOC:tfm, http://www.immgen.org/index_content.html]
|subset=
|derives_from=
|derives_from=
|develops_from=CL:0002431
|develops_from=CL:0002431
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002433
|is_a=CL:0000810
|is_obsolete=
|located_in=
|located_in=
|name=CD69-positive, CD4-positive single-positive thymocyte
|namespace=cell;;efo
|obo_creation_date=2010-10-21T02:46:02Z
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="intermediate CD4-single-positive" EXACT [];;"T.4SP69+.Th" EXACT []
|union_of=
|xref=
}}
}}

Revision as of 10:27, 12 September 2014

Name:CD69-positive, CD4-positive single-positive thymocyte
Namespace:cell;;efo
Definition:"A CD4-positive, CD8-negative thymocyte that expresses high levels of the alpha-beta T cell receptor and is CD69-positive." [GOC:tfm, http://www.immgen.org/index_content.html]
Synonyms: "intermediate CD4-single-positive" EXACT []
"T.4SP69+.Th" EXACT []
Created by:tmeehan
Creation date:2010-10-21T02:46:02Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000810(CD4-positive, alpha-beta thymocyte)
develops_from:CL:0002431(CD4-positive, CD8-intermediate double-positive thymocyte)



Children


develops from:CL:0002432 (CD24-positive, CD4 single-positive thymocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002433 (CD69-positive, CD4-positive single-positive thymocyte), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
2.55e-98FFCP PHASE2:Hg19::chr1:183622379..183622388,-#_6658208391c2e4b4385ae1e3153249b0p4@APOBEC4
2.55e-98FFCP PHASE1:Hg19::chr2:162762361..162762364,+#_6658208391c2e4b4385ae1e3153249b0p@chr2:162762361..162762364, +
2.55e-98FFCP PHASE2:Hg19::chr2:162762361..162762364,+#_6658208391c2e4b4385ae1e3153249b0p@chr2:162762361..162762364, +
2.55e-98FFCP PHASE1:Hg19::chr1:183622379..183622388,-#_6658208391c2e4b4385ae1e3153249b0p4@APOBEC4
1.36e-86FFCP PHASE2:Mm9::chr13:30878406..30878419,+#_118ee218ea2d517abda8e232719643bdp@chr13:30878406..30878419, +
1.36e-86FFCP PHASE2:Mm9::chrX:54476786..54476810,+#_118ee218ea2d517abda8e232719643bdp@chrX:54476786..54476810, +
1.36e-86FFCP PHASE1:Mm9::chr13:30878406..30878419,+#_118ee218ea2d517abda8e232719643bdp@chr13:30878406..30878419, +
1.36e-86FFCP PHASE1:Mm9::chrX:54476786..54476810,+#_118ee218ea2d517abda8e232719643bdp@chrX:54476786..54476810, +
1.01e-74FFCP PHASE2:Mm9::chr16:52032670..52032685,+#_6ec4ceb9cc2cfc341ffeb5a778fb1fafp@chr16:52032670..52032685, +
1.01e-74FFCP PHASE1:Mm9::chr16:52032670..52032685,+#_6ec4ceb9cc2cfc341ffeb5a778fb1fafp@chr16:52032670..52032685, +
2.41e-74FFCP PHASE2:Mm9::chr16:93777453..93777464,+#_8280dcba2e817b850607cce805da9b26p@chr16:93777453..93777464, +
2.41e-74FFCP PHASE2:Mm9::chr14:54795946..54795960,+#_8280dcba2e817b850607cce805da9b26p1@ENSMUST00000103701
2.41e-74FFCP PHASE1:Mm9::chr14:54795946..54795960,+#_8280dcba2e817b850607cce805da9b26p1@ENSMUST00000103701
2.41e-74FFCP PHASE1:Mm9::chr16:93777453..93777464,+#_8280dcba2e817b850607cce805da9b26p@chr16:93777453..93777464, +
2.48e-72FFCP PHASE1:Mm9::chr15:80403112..80403122,+#_0d0889c0c16ad274bc82215ee5583568p12@Grap2
2.48e-72FFCP PHASE1:Mm9::chr11:11592840..11592849,+#_0d0889c0c16ad274bc82215ee5583568p@chr11:11592840..11592849, +
2.48e-72FFCP PHASE2:Mm9::chr15:80403112..80403122,+#_0d0889c0c16ad274bc82215ee5583568p12@Grap2
2.48e-72FFCP PHASE1:Mm9::chr14:54827490..54827502,+#_0d0889c0c16ad274bc82215ee5583568p@chr14:54827490..54827502, +
2.48e-72FFCP PHASE2:Mm9::chr14:122362270..122362291,-#_0d0889c0c16ad274bc82215ee5583568p@chr14:122362270..122362291, -
2.48e-72FFCP PHASE2:Mm9::chr14:54827490..54827502,+#_0d0889c0c16ad274bc82215ee5583568p@chr14:54827490..54827502, +
2.48e-72FFCP PHASE1:Mm9::chr13:30853488..30853499,+#_0d0889c0c16ad274bc82215ee5583568p@chr13:30853488..30853499, +
2.48e-72FFCP PHASE2:Mm9::chr11:11587720..11587735,+#_0d0889c0c16ad274bc82215ee5583568p@chr11:11587720..11587735, +
2.48e-72FFCP PHASE2:Mm9::chr13:30853488..30853499,+#_0d0889c0c16ad274bc82215ee5583568p@chr13:30853488..30853499, +
2.48e-72FFCP PHASE1:Mm9::chr14:122362270..122362291,-#_0d0889c0c16ad274bc82215ee5583568p@chr14:122362270..122362291, -
2.48e-72FFCP PHASE2:Mm9::chr11:11592840..11592849,+#_0d0889c0c16ad274bc82215ee5583568p@chr11:11592840..11592849, +
2.48e-72FFCP PHASE1:Mm9::chr11:11587720..11587735,+#_0d0889c0c16ad274bc82215ee5583568p@chr11:11587720..11587735, +
2.39e-66FFCP PHASE1:Hg19::chr9:75772924..75772957,+#_eb46e3cc8f1b2edaf6f4cd739f3574afp17@ANXA1
2.39e-66FFCP PHASE2:Hg19::chr9:75772924..75772957,+#_eb46e3cc8f1b2edaf6f4cd739f3574afp17@ANXA1
4.66e-66FFCP PHASE2:Hg19::chr20:37493438..37493456,-#_6e54aaba0768dccd9a6433694039c07cp@chr20:37493438..37493456, -
4.66e-66FFCP PHASE1:Hg19::chr2:204816181..204816219,-#_6e54aaba0768dccd9a6433694039c07cp@chr2:204816181..204816219, -
4.66e-66FFCP PHASE2:Hg19::chr2:204816181..204816219,-#_6e54aaba0768dccd9a6433694039c07cp@chr2:204816181..204816219, -
4.66e-66FFCP PHASE2:Hg19::chr11:118209514..118209525,+#_6e54aaba0768dccd9a6433694039c07cp@chr11:118209514..118209525, +
4.66e-66FFCP PHASE1:Hg19::chr11:118209514..118209525,+#_6e54aaba0768dccd9a6433694039c07cp@chr11:118209514..118209525, +
4.66e-66FFCP PHASE1:Hg19::chr20:37493438..37493456,-#_6e54aaba0768dccd9a6433694039c07cp@chr20:37493438..37493456, -
1.05e-65FFCP PHASE2:Mm9::chr14:53242248..53242261,+#_fe9c7c14933b2da958f496f7492010e3p@chr14:53242248..53242261, +
1.05e-65FFCP PHASE1:Mm9::chr14:53242248..53242261,+#_fe9c7c14933b2da958f496f7492010e3p@chr14:53242248..53242261, +
1.74e-65FFCP PHASE2:Mm9::chr5:123439274..123439290,+#_e4427442ba8c7105eab00f7abfa9d51ap4@ENSMUST00000148466, p4@uc008zmw.1
1.74e-65FFCP PHASE1:Mm9::chr5:123439274..123439290,+#_e4427442ba8c7105eab00f7abfa9d51ap4@ENSMUST00000148466, p4@uc008zmw.1
2.25e-65FFCP PHASE1:Mm9::chr5:123465978..123465989,-#_a34fc130ef2db841fe67afa36fc6764bp@chr5:123465978..123465989, -
2.25e-65FFCP PHASE2:Mm9::chr5:123465978..123465989,-#_a34fc130ef2db841fe67afa36fc6764bp@chr5:123465978..123465989, -
2.25e-65FFCP PHASE2:Mm9::chr15:80403104..80403111,+#_a34fc130ef2db841fe67afa36fc6764bp10@Grap2
2.25e-65FFCP PHASE1:Mm9::chr1:140069290..140069308,+#_a34fc130ef2db841fe67afa36fc6764bp@chr1:140069290..140069308, +
2.25e-65FFCP PHASE2:Mm9::chr1:140069290..140069308,+#_a34fc130ef2db841fe67afa36fc6764bp@chr1:140069290..140069308, +
2.25e-65FFCP PHASE1:Mm9::chr15:80403104..80403111,+#_a34fc130ef2db841fe67afa36fc6764bp10@Grap2
2.9e-65FFCP PHASE1:Mm9::chr11:46200242..46200255,+#_f7f4fa96d4d959cd98604ef269a676aap@chr11:46200242..46200255, +
2.9e-65FFCP PHASE1:Mm9::chr6:41504409..41504422,-#_f7f4fa96d4d959cd98604ef269a676aap@chr6:41504409..41504422, -
2.9e-65FFCP PHASE2:Mm9::chr14:54817583..54817593,-#_f7f4fa96d4d959cd98604ef269a676aap@chr14:54817583..54817593, -
2.9e-65FFCP PHASE1:Mm9::chr14:54817583..54817593,-#_f7f4fa96d4d959cd98604ef269a676aap@chr14:54817583..54817593, -
2.9e-65FFCP PHASE2:Mm9::chr6:41504409..41504422,-#_f7f4fa96d4d959cd98604ef269a676aap@chr6:41504409..41504422, -
2.9e-65FFCP PHASE2:Mm9::chr11:46200242..46200255,+#_f7f4fa96d4d959cd98604ef269a676aap@chr11:46200242..46200255, +
3.74e-65FFCP PHASE2:Mm9::chr4:32328217..32328228,-#_609f55e711c49509e76fb485237c3640p@chr4:32328217..32328228, -
3.74e-65FFCP PHASE1:Mm9::chr4:32328217..32328228,-#_609f55e711c49509e76fb485237c3640p@chr4:32328217..32328228, -
6.21e-65FFCP PHASE1:Mm9::chr13:105412781..105412798,+#_a13949e4540933f1dab366c409330e08p@chr13:105412781..105412798, +
6.21e-65FFCP PHASE2:Mm9::chr5:123465955..123465966,-#_a13949e4540933f1dab366c409330e08p@chr5:123465955..123465966, -
6.21e-65FFCP PHASE2:Mm9::chr11:46200110..46200124,-#_a13949e4540933f1dab366c409330e08p@chr11:46200110..46200124, -
6.21e-65FFCP PHASE1:Mm9::chr5:123465955..123465966,-#_a13949e4540933f1dab366c409330e08p@chr5:123465955..123465966, -
6.21e-65FFCP PHASE2:Mm9::chr13:105412781..105412798,+#_a13949e4540933f1dab366c409330e08p@chr13:105412781..105412798, +
6.21e-65FFCP PHASE1:Mm9::chr11:46200110..46200124,-#_a13949e4540933f1dab366c409330e08p@chr11:46200110..46200124, -
1.0e-60FFCP PHASE1:Mm9::chr2:11097490..11097500,+#_576c6e636734c09efa63a95ed11f8ce5p@chr2:11097490..11097500, +
1.0e-60FFCP PHASE2:Mm9::chr2:11097490..11097500,+#_576c6e636734c09efa63a95ed11f8ce5p@chr2:11097490..11097500, +
1.33e-60FFCP PHASE2:Mm9::chr12:70398221..70398232,-#_8afa7250c98681b610897e5b5dda9e11p@chr12:70398221..70398232, -
1.33e-60FFCP PHASE2:Mm9::chr7:150943007..150943022,+#_8afa7250c98681b610897e5b5dda9e11p@chr7:150943007..150943022, +
1.33e-60FFCP PHASE1:Mm9::chr5:108160486..108160515,-#_8afa7250c98681b610897e5b5dda9e11p@chr5:108160486..108160515, -
1.33e-60FFCP PHASE1:Mm9::chr12:70398221..70398232,-#_8afa7250c98681b610897e5b5dda9e11p@chr12:70398221..70398232, -
1.33e-60FFCP PHASE2:Mm9::chr10:128157769..128157772,-#_8afa7250c98681b610897e5b5dda9e11p@chr10:128157769..128157772, -
1.33e-60FFCP PHASE1:Mm9::chr10:128157769..128157772,-#_8afa7250c98681b610897e5b5dda9e11p@chr10:128157769..128157772, -
1.33e-60FFCP PHASE2:Mm9::chr5:108160486..108160515,-#_8afa7250c98681b610897e5b5dda9e11p@chr5:108160486..108160515, -
1.33e-60FFCP PHASE1:Mm9::chr7:150943007..150943022,+#_8afa7250c98681b610897e5b5dda9e11p@chr7:150943007..150943022, +
1.77e-60FFCP PHASE2:Mm9::chr14:53414758..53414769,+#_57c4082a9cf2544a9d25902a2e2d0ca9p1@ENSMUST00000103582
1.77e-60FFCP PHASE1:Mm9::chr14:53414758..53414769,+#_57c4082a9cf2544a9d25902a2e2d0ca9p1@ENSMUST00000103582
2.34e-60FFCP PHASE1:Mm9::chr2:73290853..73290866,+#_96272e3f02a57c4930f9b8f807fe652dp@chr2:73290853..73290866, +
2.34e-60FFCP PHASE2:Mm9::chr2:73290853..73290866,+#_96272e3f02a57c4930f9b8f807fe652dp@chr2:73290853..73290866, +
4.1e-60FFCP PHASE1:Mm9::chr2:11181142..11181148,-#_002f70dbf2ffe56011d9ec71cbff439bp@chr2:11181142..11181148, -
4.1e-60FFCP PHASE2:Mm9::chr1:138476217..138476228,+#_002f70dbf2ffe56011d9ec71cbff439bp@chr1:138476217..138476228, +
4.1e-60FFCP PHASE2:Mm9::chr9:14708434..14708444,-#_002f70dbf2ffe56011d9ec71cbff439bp8@Folr4
4.1e-60FFCP PHASE1:Mm9::chr9:14708434..14708444,-#_002f70dbf2ffe56011d9ec71cbff439bp8@Folr4
4.1e-60FFCP PHASE1:Mm9::chr1:138476217..138476228,+#_002f70dbf2ffe56011d9ec71cbff439bp@chr1:138476217..138476228, +
4.1e-60FFCP PHASE2:Mm9::chr2:11181142..11181148,-#_002f70dbf2ffe56011d9ec71cbff439bp@chr2:11181142..11181148, -
6.9e-59FFCP PHASE1:Mm9::chrX:54477240..54477286,+#_b870e70601a74e84718543b9404c01e1p@chrX:54477240..54477286, +
6.9e-59FFCP PHASE2:Mm9::chr11:87558695..87558707,+#_b870e70601a74e84718543b9404c01e1p@chr11:87558695..87558707, +
6.9e-59FFCP PHASE2:Mm9::chrX:54465221..54465232,+#_b870e70601a74e84718543b9404c01e1p4@Cd40lg
6.9e-59FFCP PHASE2:Mm9::chrX:54477240..54477286,+#_b870e70601a74e84718543b9404c01e1p@chrX:54477240..54477286, +
6.9e-59FFCP PHASE1:Mm9::chr11:87558695..87558707,+#_b870e70601a74e84718543b9404c01e1p@chr11:87558695..87558707, +
6.9e-59FFCP PHASE1:Mm9::chrX:54465221..54465232,+#_b870e70601a74e84718543b9404c01e1p4@Cd40lg
1.09e-58FFCP PHASE2:Mm9::chr4:32339235..32339263,+#_40a4e2b54ee9036614a5a85e721f72dbp@chr4:32339235..32339263, +
1.09e-58FFCP PHASE1:Mm9::chr4:32339235..32339263,+#_40a4e2b54ee9036614a5a85e721f72dbp@chr4:32339235..32339263, +
1.71e-58FFCP PHASE1:Mm9::chr19:10904395..10904400,-#_e4f77050e3e0db88fdfe9e254353c8a1p5@Cd6
1.71e-58FFCP PHASE2:Mm9::chr19:10904395..10904400,-#_e4f77050e3e0db88fdfe9e254353c8a1p5@Cd6
1.71e-58FFCP PHASE2:Mm9::chr16:23175296..23175310,+#_e4f77050e3e0db88fdfe9e254353c8a1p3@uc007ytl.1
1.71e-58FFCP PHASE1:Mm9::chr16:23175296..23175310,+#_e4f77050e3e0db88fdfe9e254353c8a1p3@uc007ytl.1
2.15e-58FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_59532f0fbe040e7e3c14aae374bb6f5bp1@ENSMUST00000103733
2.15e-58FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_59532f0fbe040e7e3c14aae374bb6f5bp1@ENSMUST00000103733
2.69e-58FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_1b68be5778d8737dce950ab58cbf346dp@chr4:32339511..32339518, +
2.69e-58FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_1b68be5778d8737dce950ab58cbf346dp3@Tnfrsf25
2.69e-58FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_1b68be5778d8737dce950ab58cbf346dp3@Tnfrsf25
2.69e-58FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_1b68be5778d8737dce950ab58cbf346dp@chr4:32339511..32339518, +
3.38e-58FFCP PHASE2:Mm9::chr6:48656532..48656548,+#_5abce72e29ecbd7814b461e384457dc9p@chr6:48656532..48656548, +
3.38e-58FFCP PHASE1:Mm9::chr6:48656532..48656548,+#_5abce72e29ecbd7814b461e384457dc9p@chr6:48656532..48656548, +
3.91e-58FFCP PHASE1:Mm9::chr4:48060773..48060788,+#_3a2c59028aa245782852b4c2d242939cp@chr4:48060773..48060788, +
3.91e-58FFCP PHASE1:Mm9::chr10:129768028..129768035,+#_3a2c59028aa245782852b4c2d242939cp@chr10:129768028..129768035, +

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