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{{DOID
{{DOID
|id=DOID:1749
|alt_id=DOID:5512
|name=squamous cell carcinoma
|namespace=disease_ontology
|def="A carcinoma that derives_from squamous epithelial cells." [url:http://en.wikipedia.org/wiki/Squamous_cell_carcinoma, url:http://www.medicinenet.com/skin_cancer/page2.htm]
|xref=MSH:D002294;;NCI:C2929;;SNOMEDCT_2010_1_31:154605007;;SNOMEDCT_2010_1_31:189566008;;SNOMEDCT_2010_1_31:28899001;;SNOMEDCT_2010_1_31:402815007;;UMLS_CUI:C0007137;;UMLS_CUI:C0751688
|is_a=DOID:305
|synonym="epidermoid carcinoma" EXACT [CSP2005:2000-3145];;"malignant squamous cell tumor" EXACT [NCI2004_11_17:C4971];;"squamous carcinoma" EXACT [NCI2004_11_17:C2929];;"squamous cell cancer" EXACT [];;"squamous cell carcinoma (disorder)" EXACT [SNOMEDCT_2005_07_31:402815007];;"squamous cell carcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:28899001];;"squamous cell carcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189566008];;"squamous cell Epithelioma" EXACT [NCI2004_11_17:C8999]
|comment=
|comment=
|alt_id=DOID:5512
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A carcinoma that derives_from squamous epithelial cells." [url:http://en.wikipedia.org/wiki/Squamous_cell_carcinoma, url:http://www.medicinenet.com/skin_cancer/page2.htm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:1749
|is_a=DOID:305
|is_obsolete=
|located_in=
|located_in=
|name=squamous cell carcinoma
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="epidermoid carcinoma" EXACT [CSP2005:2000-3145];;"malignant squamous cell tumor" EXACT [NCI2004_11_17:C4971];;"squamous carcinoma" EXACT [NCI2004_11_17:C2929];;"squamous cell cancer" EXACT [];;"squamous cell carcinoma (disorder)" EXACT [SNOMEDCT_2005_07_31:402815007];;"squamous cell carcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:28899001];;"squamous cell carcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189566008];;"squamous cell Epithelioma" EXACT [NCI2004_11_17:C8999]
|union_of=
|xref=MSH:D002294;;NCI:C2929;;SNOMEDCT_2010_1_31:154605007;;SNOMEDCT_2010_1_31:189566008;;SNOMEDCT_2010_1_31:28899001;;SNOMEDCT_2010_1_31:402815007;;UMLS_CUI:C0007137;;UMLS_CUI:C0751688
}}
}}

Revision as of 10:33, 12 September 2014

Name:squamous cell carcinoma
Namespace:disease_ontology
Definition:"A carcinoma that derives_from squamous epithelial cells." [url:http://en.wikipedia.org/wiki/Squamous_cell_carcinoma, url:http://www.medicinenet.com/skin_cancer/page2.htm]
Xrefs:
links:

MSH:D002294
NCI:C2929
SNOMEDCT_2010_1_31:154605007
SNOMEDCT_2010_1_31:189566008
SNOMEDCT_2010_1_31:28899001
SNOMEDCT_2010_1_31:402815007
UMLS_CUI:C0007137

UMLS_CUI:C0751688
Synonyms: "epidermoid carcinoma" EXACT [CSP2005:2000-3145]
"malignant squamous cell tumor" EXACT [NCI2004_11_17:C4971]
"squamous carcinoma" EXACT [NCI2004_11_17:C2929]
"squamous cell cancer" EXACT []
"squamous cell carcinoma (disorder)" EXACT [SNOMEDCT_2005_07_31:402815007]
"squamous cell carcinoma (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:28899001]
"squamous cell carcinoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189566008]
"squamous cell Epithelioma" EXACT [NCI2004_11_17:C8999]
Alt_id: DOID:5512

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:305(carcinoma)



Children


is a:DOID:4830 (adenosquamous carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:1749 (squamous cell carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.52e-75FFCP PHASE2:Hg19::chr1:209944599..209944616,-#_9d2cbefed9d6ac61e904574822f6fae5p@chr1:209944599..209944616, -
1.52e-75FFCP PHASE1:Hg19::chr1:209944599..209944616,-#_9d2cbefed9d6ac61e904574822f6fae5p@chr1:209944599..209944616, -
2.65e-72FFCP PHASE2:Hg19::chr11:70245655..70245668,-#_9cd96311d12c9dfbddee9d0beca59bb5p@chr11:70245655..70245668, -
2.65e-72FFCP PHASE1:Hg19::chr11:70245655..70245668,-#_9cd96311d12c9dfbddee9d0beca59bb5p@chr11:70245655..70245668, -
2.04e-63FFCP PHASE2:Hg19::chr1:55436540..55436544,-#_1a3f12861e65eeffe42d8c15b8871250p@chr1:55436540..55436544, -
2.04e-63FFCP PHASE1:Hg19::chr1:55436540..55436544,-#_1a3f12861e65eeffe42d8c15b8871250p@chr1:55436540..55436544, -
3.14e-63FFCP PHASE1:Hg19::chr7:55053327..55053342,+#_fe54b1a4549f07e75a763e4d8faf95f0p@chr7:55053327..55053342, +
3.14e-63FFCP PHASE2:Hg19::chr7:55053327..55053342,+#_fe54b1a4549f07e75a763e4d8faf95f0p@chr7:55053327..55053342, +
8.34e-63FFCP PHASE2:Hg19::chr3:151034414..151034434,-#_bb702cc8715ce5c07fe73e982e86dbf4p2@GPR87
8.34e-63FFCP PHASE1:Hg19::chr3:151034414..151034434,-#_bb702cc8715ce5c07fe73e982e86dbf4p2@GPR87
1.33e-60FFCP PHASE1:Hg19::chr6:19418214..19418218,-#_1c929652cfbee4e13d62cfff8a363bf2p@chr6:19418214..19418218, -
1.33e-60FFCP PHASE2:Hg19::chr6:19418214..19418218,-#_1c929652cfbee4e13d62cfff8a363bf2p@chr6:19418214..19418218, -
4.0e-57FFCP PHASE2:Hg19::chr1:209945462..209945477,-#_d927841649aef925e4ef1c3527dc3f1dp@chr1:209945462..209945477, -
4.0e-57FFCP PHASE1:Hg19::chr1:209945462..209945477,-#_d927841649aef925e4ef1c3527dc3f1dp@chr1:209945462..209945477, -
4.38e-56FFCP PHASE1:Hg19::chr7:55053266..55053282,+#_51bebe07454210e10a9fb3954911b548p@chr7:55053266..55053282, +
4.38e-56FFCP PHASE2:Hg19::chr7:55053266..55053282,+#_51bebe07454210e10a9fb3954911b548p@chr7:55053266..55053282, +
4.21e-53FFCP PHASE2:Hg19::chr1:153530641..153530645,-#_6a896477e2604efb2c4a4a1d8cdd683ap@chr1:153530641..153530645, -
4.21e-53FFCP PHASE1:Hg19::chr1:153530641..153530645,-#_6a896477e2604efb2c4a4a1d8cdd683ap@chr1:153530641..153530645, -
5.73e-53FFCP PHASE2:Hg19::chr21:38631055..38631068,-#_9f3c98a8a0ccf3ce8e0db36db440dbb8p@chr21:38631055..38631068, -
5.73e-53FFCP PHASE1:Hg19::chr21:38631055..38631068,-#_9f3c98a8a0ccf3ce8e0db36db440dbb8p@chr21:38631055..38631068, -
1.69e-50FFCP PHASE2:Hg19::chr8:126044339..126044344,-#_0f9cb99a85150f5ad9df3fd126143e7ap@chr8:126044339..126044344, -
1.69e-50FFCP PHASE1:Hg19::chr8:126044339..126044344,-#_0f9cb99a85150f5ad9df3fd126143e7ap@chr8:126044339..126044344, -
2.43e-49FFCP PHASE1:Hg19::chr17:39755734..39755747,-#_238289c4c1d0923386832f6101099326p@chr17:39755734..39755747, -
2.43e-49FFCP PHASE2:Hg19::chr17:39755734..39755747,-#_238289c4c1d0923386832f6101099326p@chr17:39755734..39755747, -
2.53e-46FFCP PHASE2:Hg19::chr10:54215029..54215039,-#_717d215338bb70ff6e6ff36b2f718bf9p5@ENST00000435813, p5@uc001jjs.2
2.53e-46FFCP PHASE1:Hg19::chr10:54215029..54215039,-#_717d215338bb70ff6e6ff36b2f718bf9p5@ENST00000435813, p5@uc001jjs.2
1.76e-45FFCP PHASE2:Hg19::chr17:39675950..39675974,-#_87820dc8f4adc14b2e4bb1e42211fc1fp@chr17:39675950..39675974, -
1.76e-45FFCP PHASE1:Hg19::chr18:61586483..61586487,+#_87820dc8f4adc14b2e4bb1e42211fc1fp@chr18:61586483..61586487, +
1.76e-45FFCP PHASE1:Hg19::chr17:39675950..39675974,-#_87820dc8f4adc14b2e4bb1e42211fc1fp@chr17:39675950..39675974, -
1.76e-45FFCP PHASE2:Hg19::chr18:61586483..61586487,+#_87820dc8f4adc14b2e4bb1e42211fc1fp@chr18:61586483..61586487, +
4.38e-44FFCP PHASE2:Hg19::chr3:153697368..153697372,+#_60b302fb0757175316c6e74e89b35c0ap@chr3:153697368..153697372, +
4.38e-44FFCP PHASE1:Hg19::chr3:153697368..153697372,+#_60b302fb0757175316c6e74e89b35c0ap@chr3:153697368..153697372, +
1.27e-43FFCP PHASE2:Hg19::chr19:51523412..51523427,-#_415e19580e3fb7d6e7c21b1f2063d43ap2@KLK10
1.27e-43FFCP PHASE1:Hg19::chr19:51523412..51523427,-#_415e19580e3fb7d6e7c21b1f2063d43ap2@KLK10
4.85e-43FFCP PHASE2:Hg19::chr17:39675882..39675894,-#_05028423ada5f7c90a2865743e39c0e2p@chr17:39675882..39675894, -
4.85e-43FFCP PHASE2:Hg19::chrX:15683147..15683159,-#_05028423ada5f7c90a2865743e39c0e2p3@TMEM27
4.85e-43FFCP PHASE2:Hg19::chr7:55053219..55053226,+#_05028423ada5f7c90a2865743e39c0e2p@chr7:55053219..55053226, +
4.85e-43FFCP PHASE1:Hg19::chr17:39675882..39675894,-#_05028423ada5f7c90a2865743e39c0e2p@chr17:39675882..39675894, -
4.85e-43FFCP PHASE1:Hg19::chrX:15683147..15683159,-#_05028423ada5f7c90a2865743e39c0e2p3@TMEM27
4.85e-43FFCP PHASE1:Hg19::chr7:55053219..55053226,+#_05028423ada5f7c90a2865743e39c0e2p@chr7:55053219..55053226, +
1.42e-40FFCP PHASE2:Hg19::chr13:74071880..74071894,+#_0a20058fb511b0479a20452d454af0a5p@chr13:74071880..74071894, +
1.42e-40FFCP PHASE1:Hg19::chr13:74071880..74071894,+#_0a20058fb511b0479a20452d454af0a5p@chr13:74071880..74071894, +
1.5e-40FFCP PHASE2:Hg19::chr5:150998590..150998611,-#_ef66310203f96f942929fc33991e034cp@chr5:150998590..150998611, -
1.5e-40FFCP PHASE1:Hg19::chr5:150998590..150998611,-#_ef66310203f96f942929fc33991e034cp@chr5:150998590..150998611, -
2.02e-40FFCP PHASE2:Hg19::chrX:41765898..41765915,-#_2242fd59171cf87fb4f5446b614cfa5fp@chrX:41765898..41765915, -
2.02e-40FFCP PHASE1:Hg19::chrX:41765898..41765915,-#_2242fd59171cf87fb4f5446b614cfa5fp@chrX:41765898..41765915, -
6.43e-40FFCP PHASE1:Hg19::chr20:30153874..30153891,+#_1b6427791b8d5abd45e60485d12715efp8@HM13
6.43e-40FFCP PHASE2:Hg19::chr20:30153874..30153891,+#_1b6427791b8d5abd45e60485d12715efp8@HM13
2.28e-39FFCP PHASE1:Hg19::chr17:72940334..72940358,+#_b4d7625d0c9e0f566468018ff34801ffp@chr17:72940334..72940358, +
2.28e-39FFCP PHASE2:Hg19::chr17:72940334..72940358,+#_b4d7625d0c9e0f566468018ff34801ffp@chr17:72940334..72940358, +
2.41e-39FFCP PHASE2:Hg19::chr10:54259403..54259416,+#_b9e0b3856ed5475424d73ef74eb11636p@chr10:54259403..54259416, +
2.41e-39FFCP PHASE1:Hg19::chr10:54259403..54259416,+#_b9e0b3856ed5475424d73ef74eb11636p@chr10:54259403..54259416, +
4.5e-38FFCP PHASE2:Hg19::chr7:55053540..55053550,+#_2c0758678491db52f17f2425514a1e43p@chr7:55053540..55053550, +
4.5e-38FFCP PHASE1:Hg19::chr7:55053540..55053550,+#_2c0758678491db52f17f2425514a1e43p@chr7:55053540..55053550, +
2.13e-37FFCP PHASE1:Hg19::chr11:57558934..57558956,+#_51b3001e773c0a6c4b3bdc8d4d702bfep8@CTNND1
2.13e-37FFCP PHASE2:Hg19::chr11:57558934..57558956,+#_51b3001e773c0a6c4b3bdc8d4d702bfep8@CTNND1
1.18e-36FFCP PHASE1:Hg19::chr12:20975224..20975226,-#_80abe3f59019471b12dbb350d50aab13p@chr12:20975224..20975226, -
1.18e-36FFCP PHASE2:Hg19::chr12:20975224..20975226,-#_80abe3f59019471b12dbb350d50aab13p@chr12:20975224..20975226, -
2.27e-36FFCP PHASE2:Hg19::chr20:52784969..52785020,+#_e124926aec3dacc55dcd3ff9f459f7c9p@chr20:52784969..52785020, +
2.27e-36FFCP PHASE1:Hg19::chr20:52784969..52785020,+#_e124926aec3dacc55dcd3ff9f459f7c9p@chr20:52784969..52785020, +
2.56e-36FFCP PHASE2:Hg19::chr17:39678090..39678101,-#_e7c23f4fd5b1e461bb817fa9717963fep4@KRT15
2.56e-36FFCP PHASE1:Hg19::chr5:39255776..39255791,+#_e7c23f4fd5b1e461bb817fa9717963fep@chr5:39255776..39255791, +
2.56e-36FFCP PHASE1:Hg19::chr17:39678090..39678101,-#_e7c23f4fd5b1e461bb817fa9717963fep4@KRT15
2.56e-36FFCP PHASE2:Hg19::chr5:39255776..39255791,+#_e7c23f4fd5b1e461bb817fa9717963fep@chr5:39255776..39255791, +
3.32e-36FFCP PHASE2:Hg19::chr2:31607762..31607771,-#_1199e488c3f39536ebfb4250ffffc311p@chr2:31607762..31607771, -
3.32e-36FFCP PHASE1:Hg19::chr2:31607762..31607771,-#_1199e488c3f39536ebfb4250ffffc311p@chr2:31607762..31607771, -
1.21e-35FFCP PHASE1:Hg19::chr9:114557207..114557230,-#_044b223688986677b359d23fd7002451p1@C9orf84
1.21e-35FFCP PHASE2:Hg19::chr9:114557207..114557230,-#_044b223688986677b359d23fd7002451p1@C9orf84
1.94e-35FFCP PHASE1:Hg19::chr9:114490545..114490560,-#_5c68c6f995d9be823523678196e6fc9bp@chr9:114490545..114490560, -
1.94e-35FFCP PHASE2:Hg19::chr9:114490545..114490560,-#_5c68c6f995d9be823523678196e6fc9bp@chr9:114490545..114490560, -
7.61e-35FFCP PHASE2:Hg19::chr7:20257377..20257401,+#_c327a8b227cfeb97f308ba091041f838p@chr7:20257377..20257401, +
7.61e-35FFCP PHASE1:Hg19::chr7:20257377..20257401,+#_c327a8b227cfeb97f308ba091041f838p@chr7:20257377..20257401, +
8.78e-35FFCP PHASE1:Hg19::chr8:128306991..128307011,-#_618dd919432a81f55977d57cf33280e8p@chr8:128306991..128307011, -
8.78e-35FFCP PHASE2:Hg19::chr8:128306991..128307011,-#_618dd919432a81f55977d57cf33280e8p@chr8:128306991..128307011, -
1.37e-34FFCP PHASE2:Hg19::chr20:10400400..10400411,-#_3185c340795232145fa6c5eecd823475p@chr20:10400400..10400411, -
1.37e-34FFCP PHASE1:Hg19::chr20:10400400..10400411,-#_3185c340795232145fa6c5eecd823475p@chr20:10400400..10400411, -
2.01e-34FFCP PHASE2:Hg19::chr14:51955719..51955733,+#_4d043a1cb77b81d671a2dc772ae25e3dp15@FRMD6
2.01e-34FFCP PHASE1:Hg19::chr14:51955719..51955733,+#_4d043a1cb77b81d671a2dc772ae25e3dp15@FRMD6
2.93e-34FFCP PHASE1:Hg19::chr11:393795..393799,-#_836367bb83e89f56fcf6ea98b8f8788bp@chr11:393795..393799, -
2.93e-34FFCP PHASE2:Hg19::chr11:393795..393799,-#_836367bb83e89f56fcf6ea98b8f8788bp@chr11:393795..393799, -
5.36e-34FFCP PHASE1:Hg19::chr6:10413321..10413336,+#_a5a787417d03f31a43dd9a5a7f3ff8d0p@chr6:10413321..10413336, +
5.36e-34FFCP PHASE2:Hg19::chr6:10413321..10413336,+#_a5a787417d03f31a43dd9a5a7f3ff8d0p@chr6:10413321..10413336, +
5.82e-34FFCP PHASE2:Hg19::chr1:115212619..115212636,-#_df5301802dee0af248309d77f6d2a502p2@DENND2C
5.82e-34FFCP PHASE1:Hg19::chr1:115212619..115212636,-#_df5301802dee0af248309d77f6d2a502p2@DENND2C
6.3e-34FFCP PHASE2:Hg19::chr10:105796014..105796053,-#_1ac878cd21cfe298ed71a0123bf9fe04p@chr10:105796014..105796053, -
6.3e-34FFCP PHASE1:Hg19::chr10:105796014..105796053,-#_1ac878cd21cfe298ed71a0123bf9fe04p@chr10:105796014..105796053, -
8.11e-34FFCP PHASE1:Hg19::chr11:57558973..57558988,+#_57a9dae3f05b647e99be0947879a05bfp11@CTNND1
8.11e-34FFCP PHASE2:Hg19::chr11:57558973..57558988,+#_57a9dae3f05b647e99be0947879a05bfp11@CTNND1
1.5e-33FFCP PHASE2:Hg19::chr6:43423785..43423800,-#_ed5a0c8ca5052376e0db5233420b3b61p3@DLK2
1.5e-33FFCP PHASE1:Hg19::chr6:43423785..43423800,-#_ed5a0c8ca5052376e0db5233420b3b61p3@DLK2
7.55e-33FFCP PHASE2:Hg19::chr15:79296820..79296829,-#_564017d51f8b04dbe247167f28d8556dp@chr15:79296820..79296829, -
7.55e-33FFCP PHASE1:Hg19::chr15:79296820..79296829,-#_564017d51f8b04dbe247167f28d8556dp@chr15:79296820..79296829, -
1.14e-32FFCP PHASE2:Hg19::chr12:47628434..47628438,+#_420090b0c9a6d1ef053e5b5eaa0999acp1@CU678929
1.14e-32FFCP PHASE1:Hg19::chr12:47628434..47628438,+#_420090b0c9a6d1ef053e5b5eaa0999acp1@CU678929
1.46e-32FFCP PHASE2:Hg19::chr12:52525577..52525579,-#_9b730dc416b636b27924a4a049186966p@chr12:52525577..52525579, -
1.46e-32FFCP PHASE2:Hg19::chr17:76628163..76628174,-#_9b730dc416b636b27924a4a049186966p@chr17:76628163..76628174, -
1.46e-32FFCP PHASE1:Hg19::chr12:52525577..52525579,-#_9b730dc416b636b27924a4a049186966p@chr12:52525577..52525579, -
1.46e-32FFCP PHASE2:Hg19::chr20:10750941..10750951,+#_9b730dc416b636b27924a4a049186966p@chr20:10750941..10750951, +
1.46e-32FFCP PHASE1:Hg19::chr20:10750941..10750951,+#_9b730dc416b636b27924a4a049186966p@chr20:10750941..10750951, +
1.46e-32FFCP PHASE1:Hg19::chr17:76628163..76628174,-#_9b730dc416b636b27924a4a049186966p@chr17:76628163..76628174, -

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