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{{DOID
{{DOID
|id=DOID:3904
|alt_id=
|name=bronchogenic carcinoma
|namespace=disease_ontology
|def=
|xref=MSH:D002283;;NCI:C35875;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:254622008;;SNOMEDCT_2010_1_31:269561006;;SNOMEDCT_2010_1_31:363493006;;UMLS_CUI:C0007121
|is_a=DOID:1325
|synonym="BC - Bronchogenic carcinoma" EXACT [SNOMEDCT_2005_07_31:254622008];;"bronchial cancer" EXACT [CSP2005:2017-5516];;"Bronchiogenic carcinoma" EXACT [NCI2004_11_17:C35875];;"bronchogenic carcinoma" EXACT [CSP2005:2017-6052];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"cancer of bronchus" EXACT [SNOMEDCT_2005_07_31:363493006]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=DOID:3904
|is_a=DOID:1325
|is_obsolete=
|located_in=
|located_in=
|name=bronchogenic carcinoma
|namespace=disease_ontology
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
|subset=
|preceded_by=
|synonym="BC - Bronchogenic carcinoma" EXACT [SNOMEDCT_2005_07_31:254622008];;"bronchial cancer" EXACT [CSP2005:2017-5516];;"Bronchiogenic carcinoma" EXACT [NCI2004_11_17:C35875];;"bronchogenic carcinoma" EXACT [CSP2005:2017-6052];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001];;"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"cancer of bronchus" EXACT [SNOMEDCT_2005_07_31:363493006]
|union_of=
|xref=MSH:D002283;;NCI:C35875;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:254622008;;SNOMEDCT_2010_1_31:269561006;;SNOMEDCT_2010_1_31:363493006;;UMLS_CUI:C0007121
}}
}}

Revision as of 10:35, 12 September 2014

Name:bronchogenic carcinoma
Namespace:disease_ontology
Xrefs:
links:

MSH:D002283
NCI:C35875
SNOMEDCT_2010_1_31:154485001
SNOMEDCT_2010_1_31:254622008
SNOMEDCT_2010_1_31:269561006
SNOMEDCT_2010_1_31:363493006

UMLS_CUI:C0007121
Synonyms: "BC - Bronchogenic carcinoma" EXACT [SNOMEDCT_2005_07_31:254622008]
"bronchial cancer" EXACT [CSP2005:2017-5516]
"Bronchiogenic carcinoma" EXACT [NCI2004_11_17:C35875]
"bronchogenic carcinoma" EXACT [CSP2005:2017-6052]
"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
"Bronchus carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006]
"cancer of bronchus" EXACT [SNOMEDCT_2005_07_31:363493006]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:1325(bronchus cancer)



Children
NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3904 (bronchogenic carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.76e-57FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:125378873..125378876, +
4.76e-57FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405332..45405343, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399245..45399258, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399533..45399540, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399294..45399301, +
4.76e-57FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405393..45405412, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399263..45399274, +
4.76e-57FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:125378873..125378876, +
4.76e-57FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405332..45405343, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399245..45399258, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399533..45399540, +
4.76e-57FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45405393..45405412, +
4.76e-57FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399294..45399301, +
4.76e-57FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_643d0d889628ccf12ac24901a36ea2bap@chr6:45399263..45399274, +
1.49e-38FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399724..45399733, +
1.49e-38FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786593..73786601, +
1.49e-38FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399422..45399430, +
1.49e-38FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_3efaffa271a7215afa8f9beebeea155ap@chr8:40525350..40525354, -
1.49e-38FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786620..73786627, +
1.49e-38FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399724..45399733, +
1.49e-38FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786593..73786601, +
1.49e-38FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:45399422..45399430, +
1.49e-38FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_3efaffa271a7215afa8f9beebeea155ap@chr6:73786620..73786627, +
1.49e-38FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_3efaffa271a7215afa8f9beebeea155ap@chr8:40525350..40525354, -
1.8e-38FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_a89e065dbffaa49eaeb69500b6779beep@chr18:10085554..10085562, +
1.8e-38FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_a89e065dbffaa49eaeb69500b6779beep@chr18:10085554..10085562, +
2.18e-38FFCP PHASE1:Hg19::chr2:233352641..233352675,+#_2f810072074677b83937c1f2a5e1735bp@chr2:233352641..233352675, +
2.18e-38FFCP PHASE2:Hg19::chr2:233352641..233352675,+#_2f810072074677b83937c1f2a5e1735bp@chr2:233352641..233352675, +
1.14e-32FFCP PHASE2:Hg19::chr14:106916169..106916203,+#_0f3f47edfc78ae20205a26a9a4185251p@chr14:106916169..106916203, +
1.14e-32FFCP PHASE1:Hg19::chr14:106916169..106916203,+#_0f3f47edfc78ae20205a26a9a4185251p@chr14:106916169..106916203, +
1.78e-29FFCP PHASE1:Hg19::chrX:97443927..97443947,+#_39df5efeecaef77fad20cc2f4b578036p@chrX:97443927..97443947, +
1.78e-29FFCP PHASE1:Hg19::chr2:91776712..91776739,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:91776712..91776739, +
1.78e-29FFCP PHASE2:Hg19::chr8:98080543..98080550,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:98080543..98080550, -
1.78e-29FFCP PHASE2:Hg19::chr6:169224860..169224875,+#_39df5efeecaef77fad20cc2f4b578036p@chr6:169224860..169224875, +
1.78e-29FFCP PHASE2:Hg19::chr11:20362300..20362305,+#_39df5efeecaef77fad20cc2f4b578036p@chr11:20362300..20362305, +
1.78e-29FFCP PHASE1:Hg19::chr2:97626580..97626585,-#_39df5efeecaef77fad20cc2f4b578036p@chr2:97626580..97626585, -
1.78e-29FFCP PHASE1:Hg19::chr19:7834829..7834834,+#_39df5efeecaef77fad20cc2f4b578036p@chr19:7834829..7834834, +
1.78e-29FFCP PHASE1:Hg19::chr11:41519057..41519065,-#_39df5efeecaef77fad20cc2f4b578036p@chr11:41519057..41519065, -
1.78e-29FFCP PHASE2:Hg19::chr7:138721040..138721056,+#_39df5efeecaef77fad20cc2f4b578036p@chr7:138721040..138721056, +
1.78e-29FFCP PHASE2:Hg19::chr13:104517168..104517170,+#_39df5efeecaef77fad20cc2f4b578036p@chr13:104517168..104517170, +
1.78e-29FFCP PHASE2:Hg19::chr10:129704395..129704457,+#_39df5efeecaef77fad20cc2f4b578036p@chr10:129704395..129704457, +
1.78e-29FFCP PHASE1:Hg19::chr7:63539651..63539654,+#_39df5efeecaef77fad20cc2f4b578036p1@ENST00000430271
1.78e-29FFCP PHASE1:Hg19::chr3:86929211..86929219,+#_39df5efeecaef77fad20cc2f4b578036p@chr3:86929211..86929219, +
1.78e-29FFCP PHASE1:Hg19::chr2:175412075..175412078,+#_39df5efeecaef77fad20cc2f4b578036p3@uc002uix.1
1.78e-29FFCP PHASE2:Hg19::chr8:57525544..57525580,+#_39df5efeecaef77fad20cc2f4b578036p@chr8:57525544..57525580, +
1.78e-29FFCP PHASE1:Hg19::chr16:7411388..7411391,+#_39df5efeecaef77fad20cc2f4b578036p@chr16:7411388..7411391, +
1.78e-29FFCP PHASE2:Hg19::chr8:73794113..73794122,+#_39df5efeecaef77fad20cc2f4b578036p@chr8:73794113..73794122, +
1.78e-29FFCP PHASE1:Hg19::chr15:62007373..62007374,-#_39df5efeecaef77fad20cc2f4b578036p2@ENST00000559590
1.78e-29FFCP PHASE2:Hg19::chr5:134915254..134915270,-#_39df5efeecaef77fad20cc2f4b578036p3@CXCL14
1.78e-29FFCP PHASE2:Hg19::chr2:97626185..97626188,-#_39df5efeecaef77fad20cc2f4b578036p@chr2:97626185..97626188, -
1.78e-29FFCP PHASE2:Hg19::chr1:219599419..219599426,-#_39df5efeecaef77fad20cc2f4b578036p@chr1:219599419..219599426, -
1.78e-29FFCP PHASE2:Hg19::chr14:60194043..60194066,-#_39df5efeecaef77fad20cc2f4b578036p18@RTN1
1.78e-29FFCP PHASE2:Hg19::chr13:76554315..76554319,+#_39df5efeecaef77fad20cc2f4b578036p@chr13:76554315..76554319, +
1.78e-29FFCP PHASE1:Hg19::chr13:76694533..76694542,+#_39df5efeecaef77fad20cc2f4b578036p@chr13:76694533..76694542, +
1.78e-29FFCP PHASE2:Hg19::chr7:44574327..44574332,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:44574327..44574332, -
1.78e-29FFCP PHASE2:Hg19::chr3:86701885..86701893,-#_39df5efeecaef77fad20cc2f4b578036p@chr3:86701885..86701893, -
1.78e-29FFCP PHASE2:Hg19::chr21:26144899..26144920,-#_39df5efeecaef77fad20cc2f4b578036p@chr21:26144899..26144920, -
1.78e-29FFCP PHASE2:Hg19::chr6:154710410..154710428,-#_39df5efeecaef77fad20cc2f4b578036p@chr6:154710410..154710428, -
1.78e-29FFCP PHASE1:Hg19::chr2:97626013..97626024,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:97626013..97626024, +
1.78e-29FFCP PHASE2:Hg19::chrX:135761931..135761934,-#_39df5efeecaef77fad20cc2f4b578036p@chrX:135761931..135761934, -
1.78e-29FFCP PHASE1:Hg19::chr14:60194318..60194325,-#_39df5efeecaef77fad20cc2f4b578036p22@RTN1
1.78e-29FFCP PHASE2:Hg19::chr7:84390545..84390550,+#_39df5efeecaef77fad20cc2f4b578036p@chr7:84390545..84390550, +
1.78e-29FFCP PHASE2:Hg19::chr7:120379758..120379765,+#_39df5efeecaef77fad20cc2f4b578036p@chr7:120379758..120379765, +
1.78e-29FFCP PHASE2:Hg19::chr18:73967160..73967162,-#_39df5efeecaef77fad20cc2f4b578036p@chr18:73967160..73967162, -
1.78e-29FFCP PHASE1:Hg19::chr21:16662950..16662957,-#_39df5efeecaef77fad20cc2f4b578036p@chr21:16662950..16662957, -
1.78e-29FFCP PHASE1:Hg19::chr18:37420947..37420953,+#_39df5efeecaef77fad20cc2f4b578036p@chr18:37420947..37420953, +
1.78e-29FFCP PHASE1:Hg19::chr10:129704382..129704389,+#_39df5efeecaef77fad20cc2f4b578036p@chr10:129704382..129704389, +
1.78e-29FFCP PHASE2:Hg19::chr20:2779140..2779150,-#_39df5efeecaef77fad20cc2f4b578036p9@CPXM1
1.78e-29FFCP PHASE2:Hg19::chr15:89655929..89655934,+#_39df5efeecaef77fad20cc2f4b578036p@chr15:89655929..89655934, +
1.78e-29FFCP PHASE1:Hg19::chr8:98073725..98073731,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:98073725..98073731, -
1.78e-29FFCP PHASE1:Hg19::chr5:28571974..28571978,-#_39df5efeecaef77fad20cc2f4b578036p@chr5:28571974..28571978, -
1.78e-29FFCP PHASE1:Hg19::chr2:241625475..241625482,+#_39df5efeecaef77fad20cc2f4b578036p8@ENST00000407635
1.78e-29FFCP PHASE1:Hg19::chr12:41194014..41194019,+#_39df5efeecaef77fad20cc2f4b578036p@chr12:41194014..41194019, +
1.78e-29FFCP PHASE2:Hg19::chr8:100549773..100549807,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:100549773..100549807, -
1.78e-29FFCP PHASE2:Hg19::chr14:58415850..58415853,-#_39df5efeecaef77fad20cc2f4b578036p@chr14:58415850..58415853, -
1.78e-29FFCP PHASE1:Hg19::chr2:192805413..192805418,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:192805413..192805418, +
1.78e-29FFCP PHASE1:Hg19::chr10:65821760..65821780,+#_39df5efeecaef77fad20cc2f4b578036p@chr10:65821760..65821780, +
1.78e-29FFCP PHASE2:Hg19::chr7:26657673..26657685,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:26657673..26657685, -
1.78e-29FFCP PHASE2:Hg19::chr2:135120480..135120481,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:135120480..135120481, +
1.78e-29FFCP PHASE2:Hg19::chr13:76755731..76755739,+#_39df5efeecaef77fad20cc2f4b578036p@chr13:76755731..76755739, +
1.78e-29FFCP PHASE2:Hg19::chr8:98015616..98015617,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:98015616..98015617, -
1.78e-29FFCP PHASE1:Hg19::chr2:220607845..220607848,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:220607845..220607848, +
1.78e-29FFCP PHASE2:Hg19::chr17:70940275..70940283,+#_39df5efeecaef77fad20cc2f4b578036p@chr17:70940275..70940283, +
1.78e-29FFCP PHASE1:Hg19::chr7:26590581..26590596,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:26590581..26590596, -
1.78e-29FFCP PHASE1:Hg19::chr3:77129779..77129782,+#_39df5efeecaef77fad20cc2f4b578036p@chr3:77129779..77129782, +
1.78e-29FFCP PHASE1:Hg19::chr18:28978481..28978484,-#_39df5efeecaef77fad20cc2f4b578036p@chr18:28978481..28978484, -
1.78e-29FFCP PHASE1:Hg19::chr13:92571252..92571265,-#_39df5efeecaef77fad20cc2f4b578036p@chr13:92571252..92571265, -
1.78e-29FFCP PHASE2:Hg19::chr1:168756079..168756087,+#_39df5efeecaef77fad20cc2f4b578036p3@ENST00000420691
1.78e-29FFCP PHASE1:Hg19::chr8:98014001..98014041,-#_39df5efeecaef77fad20cc2f4b578036p@chr8:98014001..98014041, -
1.78e-29FFCP PHASE2:Hg19::chr2:103235035..103235044,+#_39df5efeecaef77fad20cc2f4b578036p@chr2:103235035..103235044, +
1.78e-29FFCP PHASE2:Hg19::chr10:29212181..29212188,+#_39df5efeecaef77fad20cc2f4b578036p@chr10:29212181..29212188, +
1.78e-29FFCP PHASE1:Hg19::chrX:135761770..135761786,-#_39df5efeecaef77fad20cc2f4b578036p@chrX:135761770..135761786, -
1.78e-29FFCP PHASE1:Hg19::chr7:120378721..120378730,-#_39df5efeecaef77fad20cc2f4b578036p@chr7:120378721..120378730, -
1.78e-29FFCP PHASE1:Hg19::chr13:25269257..25269262,+#_39df5efeecaef77fad20cc2f4b578036p@chr13:25269257..25269262, +
1.78e-29FFCP PHASE2:Hg19::chr9:17454062..17454088,+#_39df5efeecaef77fad20cc2f4b578036p@chr9:17454062..17454088, +
1.78e-29FFCP PHASE2:Hg19::chr6:45398505..45398508,+#_39df5efeecaef77fad20cc2f4b578036p@chr6:45398505..45398508, +
1.78e-29FFCP PHASE2:Hg19::chr4:160189282..160189289,+#_39df5efeecaef77fad20cc2f4b578036p38@RAPGEF2
1.78e-29FFCP PHASE2:Hg19::chr16:11118533..11118538,+#_39df5efeecaef77fad20cc2f4b578036p12@CLEC16A
1.78e-29FFCP PHASE2:Hg19::chr12:54535470..54535475,+#_39df5efeecaef77fad20cc2f4b578036p@chr12:54535470..54535475, +
1.78e-29FFCP PHASE2:Hg19::chr11:73475071..73475076,-#_39df5efeecaef77fad20cc2f4b578036p@chr11:73475071..73475076, -

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