UBERON:0000045: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FBbt_00005137-FMA_5884-FMA_5888-MA_0000232-MA_0002406-MIAA_0000162-MIAA_0000207-MIAA_0000343-WBbt_0005189-XAO_0000209-XAO_0000210-ZFA_0000190-ZFA_0000200 | ||
|comment=TODO - check vert vs invert. Other species: Any of a number of aggregations of neurons, glial cells and their processes, surrounded by a glial cell and connective tissue sheath (plural: ganglia). // Subdivision of neural tree (organ) which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord); together with a nucleus and its associated nerve, it constitutes a neural tree (organ). Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion. // a cluster of nerve cells and associated glial cells (nuclear location) // Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system. // Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com). | |comment=TODO - check vert vs invert. Other species: Any of a number of aggregations of neurons, glial cells and their processes, surrounded by a glial cell and connective tissue sheath (plural: ganglia). // Subdivision of neural tree (organ) which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord); together with a nucleus and its associated nerve, it constitutes a neural tree (organ). Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion. // a cluster of nerve cells and associated glial cells (nuclear location) // Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system. // Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com). | ||
|created_by= | |created_by= | ||
| | |def="A biological tissue mass, most commonly a mass of nerve cell bodies." [Wikipedia:Ganglion] | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0003869 | |develops_from=UBERON:0003869 | ||
|disjoint_from=UBERON:0002420 | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000045 | |||
|is_a=UBERON:0003714 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=ganglion | |||
|namespace= | |||
|obo_creation_date= | |||
|part_of=UBERON:0001016 | |part_of=UBERON:0001016 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system.[AAO]" xsd:string;;UBPROP:0000001 "Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system.[AAO]" xsd:string;;UBPROP:0000001 "Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string | ||
| | |subset=uberon_slim;;vertebrate_core | ||
| | |synonym="ganglia" RELATED [];;"neural ganglion" RELATED [BTO:0000497] | ||
|union_of= | |||
|xref=AAO:0010426;;AEO:0000135;;BTO:0000497;;EFO:0000899;;EHDAA2:0003135;;EHDAA:2897;;EHDAA:4662;;EHDAA:5621;;EHDAA:918;;EV:0100372;;FBbt:00005137;;FMA:5884;;MA:0002406;;MAT:0000207;;MAT:0000343;;MESH:A.08.340;;MIAA:0000207;;MIAA:0000343;;ncithesaurus:Ganglion;;NIF_GrossAnatomy:nlx_anat_100302;;TAO:0000190;;TGMA:0001016;;VHOG:0000156;;WBbt:0005189;;XAO:0000209;;ZFA:0000190 | |||
}} | }} | ||
Revision as of 10:49, 12 September 2014
| Name: | ganglion | ||
|---|---|---|---|
| Definition: | "A biological tissue mass, most commonly a mass of nerve cell bodies." [Wikipedia:Ganglion] | ||
| Xrefs: |
| ||
| Synonyms: |
"ganglia" RELATED [] "neural ganglion" RELATED [BTO:0000497] | ||
| Comments: | TODO - check vert vs invert. Other species: Any of a number of aggregations of neurons, glial cells and their processes, surrounded by a glial cell and connective tissue sheath (plural: ganglia). // Subdivision of neural tree (organ) which primarily consists of cell bodies of neurons located outside the neuraxis (brain and spinal cord); together with a nucleus and its associated nerve, it constitutes a neural tree (organ). Examples: spinal ganglion, trigeminal ganglion, superior cervical ganglion, celiac ganglion, inferior hypogastric (pelvic) ganglion. // a cluster of nerve cells and associated glial cells (nuclear location) // Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system. // Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com). | ||
| Alt_id: | UBERON:FBbt_00005137-FMA_5884-FMA_5888-MA_0000232-MA_0002406-MIAA_0000162-MIAA_0000207-MIAA_0000343-WBbt_0005189-XAO_0000209-XAO_0000210-ZFA_0000190-ZFA_0000200 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003714(neural tissue) |
|---|---|
| disjoint_from: | UBERON:0002420(basal ganglion) |
| develops_from: | UBERON:0003869(presumptive ganglion) |
| part_of: | UBERON:0001016(nervous system) |
Children
| is a: | UBERON:0001714 (cranial ganglion),UBERON:0003338 (ganglion of peripheral nervous system) |
|---|---|
| part of: | FF:0000186 (sympathetic ganglia) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 11959-126C6 (Neurons - spiral ganglion, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000045 (ganglion), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of tissue that contains cell bodies of neurons and is located outside the central nervous system.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Structures containing a collection of nerve cell bodies. (Source: BioGlossary, www.Biology-Text.com)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
