UBERON:0001005: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FBbt_00005043-FMA_7394-MA_0000441-MIAA_0000137-XAO_0000118 | ||
|comment=This class generically groups trachea and analagous structures throughout metazoa. Consider renaming, as the term could be taken to mean lumen of tracheal system (e.g. in SNOMED) | |comment=This class generically groups trachea and analagous structures throughout metazoa. Consider renaming, as the term could be taken to mean lumen of tracheal system (e.g. in SNOMED) | ||
|created_by= | |created_by= | ||
| | |def="An airway through which respiratory air passes in organisms." [Wikipedia:Trachea] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001005 | |||
|is_a=UBERON:0003103 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=respiratory airway | |||
|namespace= | |||
|obo_creation_date= | |||
|part_of=UBERON:0001004 | |part_of=UBERON:0001004 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=grouping_class;;uberon_slim | ||
| | |synonym= | ||
|union_of= | |||
|xref=SCTID:361380005 | |||
}} | }} | ||
Revision as of 10:59, 12 September 2014
| Name: | respiratory airway | ||
|---|---|---|---|
| Definition: | "An airway through which respiratory air passes in organisms." [Wikipedia:Trachea] | ||
| Xrefs: |
| ||
| Comments: | This class generically groups trachea and analagous structures throughout metazoa. Consider renaming, as the term could be taken to mean lumen of tracheal system (e.g. in SNOMED) | ||
| Alt_id: | UBERON:FBbt_00005043-FMA_7394-MA_0000441-MIAA_0000137-XAO_0000118 | ||
| Subset: |
grouping_class uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003103(compound organ) |
|---|---|
| part_of: | UBERON:0001004(respiratory system) |
Children
| is a: | UBERON:0000065 (respiratory tract),UBERON:0003127 (open tracheal system trachea) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10099-102C9
- 11292-117A5 (Tracheal Epithelial Cells, donor1)
- 11369-118A1 (Tracheal Epithelial Cells, donor2)
- 11441-118I1 (Tracheal Epithelial Cells, donor3)
- 11513-119H1 (Smooth Muscle Cells - Tracheal, donor1)
- 11593-120G9 (Smooth Muscle Cells - Tracheal, donor2)
- 11674-122G9 (Smooth Muscle Cells - Tracheal, donor3)
- 13367-143G1 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
... further results Mouse (Mus musculus)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10099-102C9
- 11292-117A5 (Tracheal Epithelial Cells, donor1)
- 11369-118A1 (Tracheal Epithelial Cells, donor2)
- 11441-118I1 (Tracheal Epithelial Cells, donor3)
- 11513-119H1 (Smooth Muscle Cells - Tracheal, donor1)
- 11593-120G9 (Smooth Muscle Cells - Tracheal, donor2)
- 11674-122G9 (Smooth Muscle Cells - Tracheal, donor3)
- 13367-143G1 (Tracheal epithelial cells, differentiation to ciliated epithelial cells)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001005 (respiratory airway), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:115722413..115722430,+#_da6a027fa21323dc271a7267aa350cdb | p@chr13:115722413..115722430, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:72401408..72401416,-#_da6a027fa21323dc271a7267aa350cdb | p@chr13:72401408..72401416, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:164393992..164394012,-#_da6a027fa21323dc271a7267aa350cdb | p@chr2:164393992..164394012, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr16:32641594..32641601,+#_da6a027fa21323dc271a7267aa350cdb | p@chr16:32641594..32641601, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:88696177..88696184,+#_da6a027fa21323dc271a7267aa350cdb | p2@Gm12603 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr15:101258041..101258052,+#_da6a027fa21323dc271a7267aa350cdb | p@chr15:101258041..101258052, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr12:17549752..17549763,+#_da6a027fa21323dc271a7267aa350cdb | p@chr12:17549752..17549763, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:91198876..91198885,+#_da6a027fa21323dc271a7267aa350cdb | p@chr5:91198876..91198885, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:25885558..25885567,+#_da6a027fa21323dc271a7267aa350cdb | p@chr17:25885558..25885567, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr16:32641594..32641601,+#_da6a027fa21323dc271a7267aa350cdb | p@chr16:32641594..32641601, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:88563185..88563192,-#_da6a027fa21323dc271a7267aa350cdb | p@chr4:88563185..88563192, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:147205677..147205683,+#_da6a027fa21323dc271a7267aa350cdb | p@chr6:147205677..147205683, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:110941233..110941240,+#_da6a027fa21323dc271a7267aa350cdb | p@chr9:110941233..110941240, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:147338308..147338339,-#_da6a027fa21323dc271a7267aa350cdb | p@chr6:147338308..147338339, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:96608719..96608730,-#_da6a027fa21323dc271a7267aa350cdb | p1@ENSMUST00000170876, p1@uc011ydj.1 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:147338308..147338339,-#_da6a027fa21323dc271a7267aa350cdb | p@chr6:147338308..147338339, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:115644652..115644657,-#_da6a027fa21323dc271a7267aa350cdb | p@chr13:115644652..115644657, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr3:89487103..89487111,-#_da6a027fa21323dc271a7267aa350cdb | p@chr3:89487103..89487111, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:88696144..88696152,+#_da6a027fa21323dc271a7267aa350cdb | p3@Gm12603 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:91199084..91199088,-#_da6a027fa21323dc271a7267aa350cdb | p@chr5:91199084..91199088, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:4165247..4165267,+#_da6a027fa21323dc271a7267aa350cdb | p@chr11:4165247..4165267, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:110941233..110941240,+#_da6a027fa21323dc271a7267aa350cdb | p@chr9:110941233..110941240, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr15:101258041..101258052,+#_da6a027fa21323dc271a7267aa350cdb | p@chr15:101258041..101258052, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr3:89487103..89487111,-#_da6a027fa21323dc271a7267aa350cdb | p@chr3:89487103..89487111, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:91198876..91198885,+#_da6a027fa21323dc271a7267aa350cdb | p@chr5:91198876..91198885, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:86461733..86461747,-#_da6a027fa21323dc271a7267aa350cdb | p@chr11:86461733..86461747, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:110941246..110941254,+#_da6a027fa21323dc271a7267aa350cdb | p@chr9:110941246..110941254, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:164389604..164389615,+#_da6a027fa21323dc271a7267aa350cdb | p@chr2:164389604..164389615, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:135420996..135421000,+#_da6a027fa21323dc271a7267aa350cdb | p@chr5:135420996..135421000, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:60538178..60538182,-#_da6a027fa21323dc271a7267aa350cdb | p@chr2:60538178..60538182, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:72401408..72401416,-#_da6a027fa21323dc271a7267aa350cdb | p@chr13:72401408..72401416, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:100006864..100006873,+#_da6a027fa21323dc271a7267aa350cdb | p@chr11:100006864..100006873, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:115644652..115644657,-#_da6a027fa21323dc271a7267aa350cdb | p@chr13:115644652..115644657, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:88696177..88696184,+#_da6a027fa21323dc271a7267aa350cdb | p2@Gm12603 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:25885558..25885567,+#_da6a027fa21323dc271a7267aa350cdb | p@chr17:25885558..25885567, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:110941246..110941254,+#_da6a027fa21323dc271a7267aa350cdb | p@chr9:110941246..110941254, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:86461733..86461747,-#_da6a027fa21323dc271a7267aa350cdb | p@chr11:86461733..86461747, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:91199084..91199088,-#_da6a027fa21323dc271a7267aa350cdb | p@chr5:91199084..91199088, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:108303887..108303893,+#_da6a027fa21323dc271a7267aa350cdb | p@chr1:108303887..108303893, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:164393992..164394012,-#_da6a027fa21323dc271a7267aa350cdb | p@chr2:164393992..164394012, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:151954385..151954387,+#_da6a027fa21323dc271a7267aa350cdb | p@chr1:151954385..151954387, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:135422125..135422141,-#_da6a027fa21323dc271a7267aa350cdb | p@chr5:135422125..135422141, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:147205603..147205610,+#_da6a027fa21323dc271a7267aa350cdb | p@chr6:147205603..147205610, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:4165247..4165267,+#_da6a027fa21323dc271a7267aa350cdb | p@chr11:4165247..4165267, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:115722413..115722430,+#_da6a027fa21323dc271a7267aa350cdb | p@chr13:115722413..115722430, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:164389604..164389615,+#_da6a027fa21323dc271a7267aa350cdb | p@chr2:164389604..164389615, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:135422125..135422141,-#_da6a027fa21323dc271a7267aa350cdb | p@chr5:135422125..135422141, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:88696144..88696152,+#_da6a027fa21323dc271a7267aa350cdb | p3@Gm12603 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:151954385..151954387,+#_da6a027fa21323dc271a7267aa350cdb | p@chr1:151954385..151954387, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:100006864..100006873,+#_da6a027fa21323dc271a7267aa350cdb | p@chr11:100006864..100006873, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:108303887..108303893,+#_da6a027fa21323dc271a7267aa350cdb | p@chr1:108303887..108303893, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:88563185..88563192,-#_da6a027fa21323dc271a7267aa350cdb | p@chr4:88563185..88563192, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:147205677..147205683,+#_da6a027fa21323dc271a7267aa350cdb | p@chr6:147205677..147205683, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:96608719..96608730,-#_da6a027fa21323dc271a7267aa350cdb | p1@ENSMUST00000170876, p1@uc011ydj.1 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:135420996..135421000,+#_da6a027fa21323dc271a7267aa350cdb | p@chr5:135420996..135421000, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:60538178..60538182,-#_da6a027fa21323dc271a7267aa350cdb | p@chr2:60538178..60538182, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr12:17549752..17549763,+#_da6a027fa21323dc271a7267aa350cdb | p@chr12:17549752..17549763, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:147205603..147205610,+#_da6a027fa21323dc271a7267aa350cdb | p@chr6:147205603..147205610, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr19:47939269..47939279,-#_a772082648fc3ccae618a4ae8872803f | p@chr19:47939269..47939279, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr3:121437587..121437593,+#_a772082648fc3ccae618a4ae8872803f | p@chr3:121437587..121437593, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr3:121437587..121437593,+#_a772082648fc3ccae618a4ae8872803f | p@chr3:121437587..121437593, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr14:34905716..34905718,+#_a772082648fc3ccae618a4ae8872803f | p@chr14:34905716..34905718, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:100002128..100002131,+#_a772082648fc3ccae618a4ae8872803f | p@chr11:100002128..100002131, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:4164303..4164316,+#_a772082648fc3ccae618a4ae8872803f | p@chr11:4164303..4164316, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:29642912..29642916,-#_a772082648fc3ccae618a4ae8872803f | p@chr11:29642912..29642916, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr19:47932377..47932386,-#_a772082648fc3ccae618a4ae8872803f | p@chr19:47932377..47932386, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chrX:20383628..20383635,+#_a772082648fc3ccae618a4ae8872803f | p@chrX:20383628..20383635, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr14:31386795..31386797,-#_a772082648fc3ccae618a4ae8872803f | p@chr14:31386795..31386797, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:29642912..29642916,-#_a772082648fc3ccae618a4ae8872803f | p@chr11:29642912..29642916, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:100002128..100002131,+#_a772082648fc3ccae618a4ae8872803f | p@chr11:100002128..100002131, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr14:34905716..34905718,+#_a772082648fc3ccae618a4ae8872803f | p@chr14:34905716..34905718, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr3:90392458..90392472,+#_a772082648fc3ccae618a4ae8872803f | p@chr3:90392458..90392472, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:4164303..4164316,+#_a772082648fc3ccae618a4ae8872803f | p@chr11:4164303..4164316, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr2:144564146..144564166,+#_a772082648fc3ccae618a4ae8872803f | p3@Dtd1 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr2:144564146..144564166,+#_a772082648fc3ccae618a4ae8872803f | p3@Dtd1 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr6:147212620..147212625,+#_a772082648fc3ccae618a4ae8872803f | p@chr6:147212620..147212625, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr3:90392458..90392472,+#_a772082648fc3ccae618a4ae8872803f | p@chr3:90392458..90392472, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr3:121437538..121437546,+#_a772082648fc3ccae618a4ae8872803f | p@chr3:121437538..121437546, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr6:147212620..147212625,+#_a772082648fc3ccae618a4ae8872803f | p@chr6:147212620..147212625, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr3:121437538..121437546,+#_a772082648fc3ccae618a4ae8872803f | p@chr3:121437538..121437546, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr19:47932377..47932386,-#_a772082648fc3ccae618a4ae8872803f | p@chr19:47932377..47932386, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr19:47939269..47939279,-#_a772082648fc3ccae618a4ae8872803f | p@chr19:47939269..47939279, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr14:31386795..31386797,-#_a772082648fc3ccae618a4ae8872803f | p@chr14:31386795..31386797, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chrX:20383628..20383635,+#_a772082648fc3ccae618a4ae8872803f | p@chrX:20383628..20383635, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr1:90456476..90456498,+#_f0d2cde98234386fabe8d8eea79ebdc5 | p@chr1:90456476..90456498, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr15:38385124..38385138,+#_f0d2cde98234386fabe8d8eea79ebdc5 | p@chr15:38385124..38385138, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr19:47928736..47928764,+#_f0d2cde98234386fabe8d8eea79ebdc5 | p@chr19:47928736..47928764, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr15:38385124..38385138,+#_f0d2cde98234386fabe8d8eea79ebdc5 | p@chr15:38385124..38385138, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr17:25888467..25888513,-#_f0d2cde98234386fabe8d8eea79ebdc5 | p@chr17:25888467..25888513, - |
| 6.04e-65 | FFCP PHASE1:Mm9::chr19:47928736..47928764,+#_f0d2cde98234386fabe8d8eea79ebdc5 | p@chr19:47928736..47928764, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr1:90456476..90456498,+#_f0d2cde98234386fabe8d8eea79ebdc5 | p@chr1:90456476..90456498, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr17:25888467..25888513,-#_f0d2cde98234386fabe8d8eea79ebdc5 | p@chr17:25888467..25888513, - |
| 4.76e-57 | FFCP PHASE2:Hg19::chr5:180017253..180017257,-#_f8c9d066b675c4cd6c4685fcc99fa894 | p@chr5:180017253..180017257, - |
| 4.76e-57 | FFCP PHASE1:Hg19::chr5:180017253..180017257,-#_f8c9d066b675c4cd6c4685fcc99fa894 | p@chr5:180017253..180017257, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chr12:8799233..8799252,+#_bfe90d3741f734884aa04d767b029116 | p@chr12:8799233..8799252, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr5:103804464..103804467,+#_bfe90d3741f734884aa04d767b029116 | p@chr5:103804464..103804467, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr11:94958540..94958582,+#_bfe90d3741f734884aa04d767b029116 | p@chr11:94958540..94958582, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr6:147212455..147212462,-#_bfe90d3741f734884aa04d767b029116 | p6@Pthlh |
| 4.9e-53 | FFCP PHASE1:Mm9::chr17:71105425..71105430,+#_bfe90d3741f734884aa04d767b029116 | p@chr17:71105425..71105430, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chrX:163645025..163645028,+#_bfe90d3741f734884aa04d767b029116 | p@chrX:163645025..163645028, + |
